BS31163.complete Sequence
3956 bp assembled on 2012-07-30
GenBank Submission: KX801360
> BS31163.complete
GAAGTTATCAGTCGACATGAACACAACAGTAATGACATTGAAATGGCGCC
AGAAATACAAAAGCAGAAAAAGGCCAAAGAAACTAAGACAACGAATATTT
GCAACAAACACTGCCCCAGCAAAAGCAACAACAACACCAAACCATAAAGC
AACAACAAAAGCAACCAGCAGACTGAGAGAAACAAGATGCAAACTGAGGA
GGCACAATAAATGTCTGCCAAGTGAACAACACAGAAATGTAGCTAAAATG
CGGCTGAAAGTGTCGACAAGTGCAACACAATGTCGCGCAATTAAAGCAAC
AGAAACACCAGCAACATCCAAAATGACTTCCAGCTGCAGCGGCCATTGTC
AGTCGCAACAGCAACAGCAGCAACAGCAGCACCAGTTGCAGCAGCAGCAT
CAGCAGTCGCAACATCAACAGCGGCGACATCCACTTCCGGCGACGCTGAC
GCTGCTCCTCTGCCTGGGAATCAGTTTGGGCATGGCTGCCACAGCAGCAG
CCGCCGGCGGAGGAGGAGGTGGCGGAGGCGGAGCTGCACCCGTTTCCGGA
TCCGGAGCAGCTGGCTTCCCATCCAGCTCTAGCTCCATCTCGAGCTCCTT
GGGGCCGGGCAAACCTGTCAATTTGCAACTGGCACCCGGCTCCTCCTCGA
CGGGCTGTTCCCTCGCCGAATTCAGCTGCTCCAATGGAAGATGCGTGCCA
CTCAGCAAGTACTGCAACAATCTAAACGACTGCGGCGACGGTAGTGACGA
GCCGCGATTTTGTACACGCTGCAATCGCACCTACTACGGAGACATTGGAC
AGACCTACGCCCTGGAGCTGCACCGCCCCAAACAGGATCGCGTGCCCTTC
GTGTGCGTGCTCACCTTCACGGCGGCAGGTGGACAACACGGCGATGTGGT
GCAGGTCACCCTGGACAGCTTCACGATTGGCAGGTTCACCTCGTACGTCC
ATGAGGGTTGTCCGGATGGATACATGCAGATAGCGGAGTCGGCACGGACT
CCGATCGGTGGCATGTGGTGCGGCAGCTCCTGGGGACCAGTGCTCTTCTA
CAGCGAGACCCGCTCCCTGATATTCACCATCCGGCTGAACAGACTGGCGA
GGGATCAGAGTGGCTACAACTTCGACTTTCGCATCAGATACAAGGTTTTG
TCCAGGGACAGTTCGGTGACCCGCTACGGGGGCATTAAGCTGGCAGAGCT
GGCCCAGTGGCACAACCGCAGTAGCTTTCTCAATCAGCAACAGCAACAGC
AACAGCAACAGCAACAGCAGCAGCAGCAACAACAAGGCGCTCCCGGTATC
CTGGAGGATTTTACCAACTCCAGTGTAGCCCGTTCGGACCGCTATGGCCA
GGACTTTAGCCTTTTCAGCGCTTATGCCAACAACAAGACCTTCATGGCCT
CACTGGAGAAATCCTTGGCCAAGGACGAGCAGAACTACACGGAGCCCAAG
TACTACCTGGGTGACCTCATACCCGGAACGTACTGCTCCAGGATCTTCAG
CGACTGCGACAAGAAGCCGTGTCGCCTGCAGTCGCCCAACTTTCCGGGCA
TCTATCCGCGCAACCTCACCTGCTACTATGCAGTGCGACAGCACGACGTG
CCCCATGGCAAACACGCCCTGATTCTAGTCAAACAGCCCAAGGGCAATCT
GGTCTGGATTTCCACCCAGGAAACGGCCGCGGCGAACAAAATGGCACCGC
CACCGAGTGCCAGCGACAAGGATAAGAAATTCGAGCCGAGGCTGAAAACA
TGGAATTACTGCGACTACATTCAGGAAAATGTAAAACCCAAATGGAAATC
CACGGACTACGTGACCGTGTACGACGGCTACACCACACGTGACCCCATCA
TATTGAAGTTCTGCGGCGGTGGTCAGGCGGTGCCGGCGGCCGTTTCCAGC
GGTCCGGAGCTTTTGGTCGAGTTCAGCACGTCGCCGTTTGGCACCTTCAC
CGGCACCTCGTCGCAGGTACTGCCGCTCTACGGATTCCAGCTAGAGGTCG
AAGTTCAATTCGTGGACATCCAGAGTCCCACGTACTCGAAAAACAAGAAA
CCCTGCGAGTTTTGGATTCGCGGTGCAGGTCGTGGCATCCTCGAGAGTCC
CAAGCACTCGCTGGCTCCCAATTCCACGTGCCTGTATCACCTCCAAGGGC
TGGGCGTCTTCAAGACCTTTGACCACCTGAGTTTGTCGCGCAGGACGAGC
AGTCAGTCGGGGATGCATCAACCGCTCTCCCGGTTCAAGGTGTGGATTTC
TGTTCTGAAGTTCAACTTGGATCCGGAGTTTGGCCAGATAGATGAGACAT
CCGTGGGCGCAATTGGAGTGCTGCAAACGCAGGAGGATTGCAGTGGAATG
CTGCGCATCTGGGATGGAACACTAAGGGATGCACCCGTTTGCAAGGACTT
GAACTGTGCCACCGAGACGAGTAGTTATAACACCTTGGGTCACTACACCC
ATAACTCCACTAGTGTGATTGCCAGATTTTGTCGGGGCACAATACCACGC
ACCTGTGATAGATCTAACATAAACGAGACCTACGCAAGACCATGCACCAT
CTCGGAGAGCTATGTGTCCACCAGCGATGCCATTACGCTCGAGCTACGCA
ACACGGAATCCACAGTATTAAGACCACTGGATTTCAAGCTGAAGTACGAG
TTCATTGATTTGCACCAGGATGGTTTGCCTTGGGGTGGTGGGGAACACGA
TTGCAATCGGAAGTTCCTTAGCAGCATGATGGATCGCAAGGATCCTGCCA
TCTTCCGCAGTGTCCGCAACATATTCCTATTTGGAAGAGGAGGAACTAGA
AACCTTAAATGCATCTATAAATTCGAGGCACAGCGAGGCGAAAGGGTCAG
AATCAAGATGAGAAAAGTAACGACCACCAACAGACCGTGCTATTCACGTG
TGGATGAGGATATCAATCGCTCCTTTTGCTATGGCGATACCAATGTCAGA
ATTGAGATCTTTGAGCGACCCTACCATGATTCCATTTTACTTCATCGAGG
CTGCATGTGCAACTCCTCTAACCAATCCCACCTACCGGTGGAATACACGT
CTACAAGTCGCGATGTGGAGGTGCACTTCATCGCCCAAAACATGACCACC
TTGGACGATCCAGATACGGTTAACTTCGAGGGTATGTTTGAGTTCGTCAA
GGCTCCAACAAGCTGCAAGGATGGACGCAGGAAATTCGGACCAAGTGGCA
CTATAGACATGACCTTCGGAGACGTGGAGTGCCGCTCAAGACCCTGGCTC
ATTGAGCCTTCTAATGGCAACAAGTTTTTGTACGTCCGCCTGAAGGCCAT
TTTCTTGAGTAAACACAATCCCACGCAGACACTGAACGCGACCTATGTGC
AGACAGATACTTGGAGATGTGAGACCAAGTCCAGAGCTGTACTAACCACG
TCGGAGGGCCTAACCATTGTGGCTTGTCCACTGAGTCCCGACTCGAATGC
CTACGAGTTTGTGGAGATCTTTAGTTCCGGATGGAACGAAAGGCCAAATT
TTGCGCTTGTCAATCGATCCCGAGCCATCAGCGTCGAGTTCCTGCGTCCT
GGCAACGGGGAGTACTCCTTCAACTGGATGGAACTGATTCCCAGGCCCAC
ACTGAGCATGGCGGAGGACTGCCAGTTTAAGTGTGCCGAATTGGGTGCCT
GTGTAAATGCCAGTGTTTGGTGTGATGGTGTAGTCCACTGTCCTTCCGGG
GACGATGAGACCTTCCTGCAGTGTTCAGCCTTGATGAAACTGCCCGCCGA
GATCCTGGCCACGCTCTGCCTCATCTTTGTGCTCTCGTGTTGTGCTTTCG
CTGCCTTTGCCTACAAGAAAATCAAACGCAAGCTGCGCGGCTCCTCGGTG
CTGCAGACGCGACTCAAATCGCTGAGCTCGATGGACACGGCCGTTCTGGA
TGAAAAGGAGAAAAAACCCGTCGTTGAAACCAAGATCTAAAAGCTTTCTA
GACCAT
BS31163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32432-RA | 3924 | CG32432-PA | 1..3924 | 17..3940 | 19620 | 100 | Plus |
| CG32432-RB | 3894 | CG32432-PB | 1758..3894 | 1804..3940 | 10685 | 100 | Plus |
| CG32432-RB | 3894 | CG32432-PB | 1..1760 | 17..1776 | 8800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32432-RA | 4487 | CG32432-RA | 373..4300 | 13..3940 | 19625 | 100 | Plus |
| CG32432-RB | 4457 | CG32432-RB | 2134..4270 | 1804..3940 | 10685 | 100 | Plus |
| CG32432-RB | 4457 | CG32432-RB | 373..2136 | 13..1776 | 8805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20859679..20860426 | 768..21 | 3740 | 100 | Minus |
| 3L | 28110227 | 3L | 20847836..20848247 | 2406..1995 | 2060 | 100 | Minus |
| 3L | 28110227 | 3L | 20847178..20847513 | 2956..2621 | 1680 | 100 | Minus |
| 3L | 28110227 | 3L | 20846852..20847122 | 3225..2955 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 20854601..20854871 | 1464..1194 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 20847565..20847781 | 2622..2406 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 20846349..20846556 | 3614..3407 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 20846089..20846292 | 3817..3614 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 20848321..20848515 | 1998..1804 | 975 | 100 | Minus |
| 3L | 28110227 | 3L | 20855104..20855293 | 1092..903 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 20852578..20852765 | 1775..1588 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 20846611..20846795 | 3408..3224 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 20856424..20856562 | 906..768 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 20854057..20854188 | 1591..1460 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 20854937..20855044 | 1196..1089 | 540 | 100 | Minus |
| 3L | 28110227 | 3L | 20845929..20846022 | 3910..3817 | 470 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2913..2960 | 707..660 | 123 | 72.9 | Minus |
BS31163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:41 Download gff for
BS31163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32432-RA | 377..4298 | 17..3938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:18 Download gff for
BS31163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32432-RA | 377..4298 | 17..3938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:03 Download gff for
BS31163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32432-RA | 377..4298 | 17..3938 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:03 Download gff for
BS31163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20846854..20847120 | 2957..3223 | 100 | <- | Minus |
| 3L | 20846612..20846795 | 3224..3407 | 100 | <- | Minus |
| 3L | 20844521..20844548 | 3911..3938 | 100 | <- | Minus |
| 3L | 20845929..20846022 | 3817..3910 | 100 | <- | Minus |
| 3L | 20846090..20846291 | 3615..3816 | 100 | <- | Minus |
| 3L | 20846349..20846555 | 3408..3614 | 100 | <- | Minus |
| 3L | 20847178..20847511 | 2623..2956 | 100 | <- | Minus |
| 3L | 20847565..20847780 | 2407..2622 | 100 | <- | Minus |
| 3L | 20847836..20848245 | 1997..2406 | 100 | <- | Minus |
| 3L | 20848323..20848514 | 1805..1996 | 100 | <- | Minus |
| 3L | 20851413..20851442 | 1775..1804 | 100 | <- | Minus |
| 3L | 20852579..20852761 | 1592..1774 | 100 | <- | Minus |
| 3L | 20854057..20854187 | 1461..1591 | 100 | <- | Minus |
| 3L | 20854605..20854868 | 1197..1460 | 100 | <- | Minus |
| 3L | 20854937..20855040 | 1093..1196 | 100 | <- | Minus |
| 3L | 20855104..20855291 | 905..1092 | 100 | <- | Minus |
| 3L | 20856426..20856562 | 768..904 | 100 | <- | Minus |
| 3L | 20859680..20860428 | 17..767 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:18 Download gff for
BS31163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20839029..20839122 | 3817..3910 | 100 | <- | Minus |
| arm_3L | 20839190..20839391 | 3615..3816 | 100 | <- | Minus |
| arm_3L | 20839449..20839655 | 3408..3614 | 100 | <- | Minus |
| arm_3L | 20839712..20839895 | 3224..3407 | 100 | <- | Minus |
| arm_3L | 20839954..20840220 | 2957..3223 | 100 | <- | Minus |
| arm_3L | 20840665..20840880 | 2407..2622 | 100 | <- | Minus |
| arm_3L | 20837621..20837648 | 3911..3938 | 100 | <- | Minus |
| arm_3L | 20840278..20840611 | 2623..2956 | 100 | <- | Minus |
| arm_3L | 20840936..20841345 | 1997..2406 | 100 | <- | Minus |
| arm_3L | 20841423..20841614 | 1805..1996 | 100 | <- | Minus |
| arm_3L | 20844513..20844542 | 1775..1804 | 100 | <- | Minus |
| arm_3L | 20845679..20845861 | 1592..1774 | 100 | <- | Minus |
| arm_3L | 20847157..20847287 | 1461..1591 | 100 | <- | Minus |
| arm_3L | 20847705..20847968 | 1197..1460 | 100 | <- | Minus |
| arm_3L | 20848037..20848140 | 1093..1196 | 100 | <- | Minus |
| arm_3L | 20848204..20848391 | 905..1092 | 100 | <- | Minus |
| arm_3L | 20849526..20849662 | 768..904 | 100 | <- | Minus |
| arm_3L | 20852780..20853528 | 17..767 | 99 | | Minus |
BS31163.pep Sequence
Translation from 16 to 3939
> BS31163.pep
MNTTVMTLKWRQKYKSRKRPKKLRQRIFATNTAPAKATTTPNHKATTKAT
SRLRETRCKLRRHNKCLPSEQHRNVAKMRLKVSTSATQCRAIKATETPAT
SKMTSSCSGHCQSQQQQQQQQHQLQQQHQQSQHQQRRHPLPATLTLLLCL
GISLGMAATAAAAGGGGGGGGGAAPVSGSGAAGFPSSSSSISSSLGPGKP
VNLQLAPGSSSTGCSLAEFSCSNGRCVPLSKYCNNLNDCGDGSDEPRFCT
RCNRTYYGDIGQTYALELHRPKQDRVPFVCVLTFTAAGGQHGDVVQVTLD
SFTIGRFTSYVHEGCPDGYMQIAESARTPIGGMWCGSSWGPVLFYSETRS
LIFTIRLNRLARDQSGYNFDFRIRYKVLSRDSSVTRYGGIKLAELAQWHN
RSSFLNQQQQQQQQQQQQQQQQQGAPGILEDFTNSSVARSDRYGQDFSLF
SAYANNKTFMASLEKSLAKDEQNYTEPKYYLGDLIPGTYCSRIFSDCDKK
PCRLQSPNFPGIYPRNLTCYYAVRQHDVPHGKHALILVKQPKGNLVWIST
QETAAANKMAPPPSASDKDKKFEPRLKTWNYCDYIQENVKPKWKSTDYVT
VYDGYTTRDPIILKFCGGGQAVPAAVSSGPELLVEFSTSPFGTFTGTSSQ
VLPLYGFQLEVEVQFVDIQSPTYSKNKKPCEFWIRGAGRGILESPKHSLA
PNSTCLYHLQGLGVFKTFDHLSLSRRTSSQSGMHQPLSRFKVWISVLKFN
LDPEFGQIDETSVGAIGVLQTQEDCSGMLRIWDGTLRDAPVCKDLNCATE
TSSYNTLGHYTHNSTSVIARFCRGTIPRTCDRSNINETYARPCTISESYV
STSDAITLELRNTESTVLRPLDFKLKYEFIDLHQDGLPWGGGEHDCNRKF
LSSMMDRKDPAIFRSVRNIFLFGRGGTRNLKCIYKFEAQRGERVRIKMRK
VTTTNRPCYSRVDEDINRSFCYGDTNVRIEIFERPYHDSILLHRGCMCNS
SNQSHLPVEYTSTSRDVEVHFIAQNMTTLDDPDTVNFEGMFEFVKAPTSC
KDGRRKFGPSGTIDMTFGDVECRSRPWLIEPSNGNKFLYVRLKAIFLSKH
NPTQTLNATYVQTDTWRCETKSRAVLTTSEGLTIVACPLSPDSNAYEFVE
IFSSGWNERPNFALVNRSRAISVEFLRPGNGEYSFNWMELIPRPTLSMAE
DCQFKCAELGACVNASVWCDGVVHCPSGDDETFLQCSALMKLPAEILATL
CLIFVLSCCAFAAFAYKKIKRKLRGSSVLQTRLKSLSSMDTAVLDEKEKK
PVVETKI*
BS31163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32432-PA | 1307 | CG32432-PA | 1..1307 | 1..1307 | 6975 | 100 | Plus |
| CG32432-PB | 1297 | CG32432-PB | 1..1297 | 1..1307 | 6897 | 99.2 | Plus |
| CG32206-PB | 1260 | CG32206-PB | 49..246 | 214..388 | 458 | 44 | Plus |
| CG32206-PE | 1278 | CG32206-PE | 49..246 | 214..388 | 458 | 44 | Plus |
| CG32206-PB | 1260 | CG32206-PB | 254..468 | 481..711 | 412 | 37.9 | Plus |
| CG32206-PE | 1278 | CG32206-PE | 254..468 | 481..711 | 412 | 37.9 | Plus |
| CG32206-PB | 1260 | CG32206-PB | 675..1049 | 827..1190 | 375 | 29 | Plus |
| CG32206-PE | 1278 | CG32206-PE | 675..1049 | 827..1190 | 375 | 29 | Plus |
