BS31175.complete Sequence
1916 bp assembled on 2012-07-30
GenBank Submission: KX801141
> BS31175.complete
GAAGTTATCAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGG
CCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAG
GAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGG
CATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGG
GCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCG
ATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGC
CACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCG
TCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTAC
ACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCA
TGCTACGGATTATTATGGAGACGACGAAGAGAGCTCACTGCAGAACCTGG
GCAACGGATTCACCTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTG
CCCACCGTTAAGGACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAA
GGAGACTGAAGTGAAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAGC
AGATGATCATACTGTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGC
CGCGTCATCGAACGGGCCCTCTCGGAGAATGTGGACATATACACGGACTA
CATCGGCGGCGGCGACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGC
GGCTCTCGCTGAACCGCGTCTTCTACGACGAGCGCTGGTCGAAGAACCGC
TGCATCACCAGCATGGACTGGTCCACCCACTTCCCCGAGCTGGTGGTGGG
CTCGTACCACAACAACGAGGAGAGTCCGAACGAGCCGGACGGCGTGGTGA
TGGTGTGGAACACCAAGTTCAAGAAGAGCACGCCCGAGGACGTCTTCCAC
TGCCAGAGCGCGGTGATGTCCACCTGCTTTGCCAAGTTCAATCCCAACCT
GATCCTCGGCGGCACCTATTCGGGCCAGATTGTGCTGTGGGACAATCGCG
TGCAGAAGCGCACGCCCATACAGCGCACGCCCCTCAGTGCCGCGGCGCAC
ACGCATCCCGTCTACTGCCTCCAAATGGTGGGCACCCAGAATGCGCACAA
CGTCATCTCCATATCCTCGGACGGCAAGCTGTGCTCCTGGTCGCTGGACA
TGCTGTCGCAACCACAGGACACGCTGGAGCTGCAGCAGCGCCAGTCGAAG
GCCATTGCCATTACATCGATGGCCTTCCCGGCCAACGAGATCAATAGCCT
GGTGATGGGCAGTGAGGACGGCTACGTCTACTCCGCCTCGCGCCACGGCC
TGCGCTCCGGGGTCAACGAGGTTTACGAACGCCATCTTGGCCCTATCACT
GGCATATCCACGCACTACAACCAGCTGTCGCCGGACTTTGGCCACCTCTT
CCTAACCTCGTCCATTGACTGGACCATCAAGCTCTGGTCGCTAAAGGACA
CAAAGCCGCTGTACTCCTTTGAGGACAACTCCGACTACGTGATGGACGTC
GCCTGGTCGCCCGTGCATCCCGCACTCTTCGCCGCCGTCGACGGCAGCGG
CCGCCTGGATCTGTGGAACCTCAACCAAGACACGGAGGTGCCGACCGCCT
CGATTGTCGTGGCGGGAGCACCAGCCCTTAACCGCGTCTCTTGGACCCCA
TCCGGTCTGCACGTGTGCATCGGCGACGAGGCCGGCAAGCTGTACGTGTA
CGACGTGGCCGAGAACCTGGCGCAGCCATCGCGCGACGAATGGTCGCGGT
TCAACACCCATCTTAGCGAGATCAAGATGAACCAGAGCGATGAGGTCTAG
AAGCTTTCTAGACCAT
BS31175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RB | 1884 | CG18000-PB | 1..1884 | 17..1900 | 9420 | 100 | Plus |
| sw-RC | 1881 | CG18000-PC | 1..1881 | 17..1900 | 9340 | 99.8 | Plus |
| sw-RI | 1884 | CG18000-PI | 1..1884 | 17..1900 | 9240 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RB | 2841 | CG18000-RB | 200..2083 | 17..1900 | 9420 | 100 | Plus |
| sw-RC | 2838 | CG18000-RC | 200..2080 | 17..1900 | 9340 | 99.8 | Plus |
| sw-RI | 2678 | CG18000-RI | 200..2083 | 17..1900 | 9240 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20229139..20230063 | 1547..623 | 4625 | 100 | Minus |
| X | 23542271 | X | 20205922..20206846 | 1547..623 | 4610 | 99.9 | Minus |
| X | 23542271 | X | 20174931..20175855 | 1547..623 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20190482..20191406 | 1547..623 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20198198..20199122 | 1547..623 | 4595 | 99.8 | Minus |
| X | 23542271 | X | 20182758..20183682 | 1547..623 | 4580 | 99.7 | Minus |
| X | 23542271 | X | 20213615..20214507 | 1515..623 | 4450 | 99.9 | Minus |
| X | 23542271 | X | 20221297..20222189 | 1515..623 | 4450 | 99.9 | Minus |
| X | 23542271 | X | 20182338..20182693 | 1900..1545 | 1780 | 100 | Minus |
| X | 23542271 | X | 20228719..20229074 | 1900..1545 | 1780 | 100 | Minus |
| X | 23542271 | X | 20220879..20221226 | 1900..1553 | 1695 | 99.1 | Minus |
| X | 23542271 | X | 20190123..20190417 | 1839..1545 | 1430 | 99 | Minus |
| X | 23542271 | X | 20197839..20198133 | 1839..1545 | 1430 | 99 | Minus |
| X | 23542271 | X | 20205563..20205857 | 1839..1545 | 1430 | 99 | Minus |
| X | 23542271 | X | 20213258..20213544 | 1839..1553 | 1390 | 99 | Minus |
| X | 23542271 | X | 20176238..20176394 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20184060..20184216 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20191789..20191945 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20199505..20199661 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20207229..20207385 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20214885..20215041 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20222567..20222723 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20230441..20230597 | 623..467 | 785 | 100 | Minus |
| X | 23542271 | X | 20235508..20235663 | 172..17 | 780 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 318..172 | 735 | 100 | Minus |
| X | 23542271 | X | 20174589..20174768 | 1900..1715 | 655 | 91.4 | Minus |
| X | 23542271 | X | 20234775..20234904 | 446..317 | 650 | 100 | Minus |
| X | 23542271 | X | 20178270..20178399 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20186145..20186274 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20201591..20201720 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 446..317 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 446..317 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:06:33 has no hits.
BS31175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:42 Download gff for
BS31175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RL | 527..977 | 17..467 | 100 | -> | Plus |
| sw-RL | 1026..2458 | 468..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:23 Download gff for
BS31175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RB | 200..2083 | 17..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:15 Download gff for
BS31175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RB | 200..2083 | 17..1900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:15 Download gff for
BS31175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20228719..20229072 | 1547..1900 | 100 | <- | Minus |
| X | 20229140..20230062 | 624..1546 | 100 | <- | Minus |
| X | 20230441..20230596 | 468..623 | 100 | <- | Minus |
| X | 20233423..20233443 | 447..467 | 100 | <- | Minus |
| X | 20234775..20234902 | 319..446 | 100 | <- | Minus |
| X | 20235288..20235434 | 172..318 | 100 | <- | Minus |
| X | 20235509..20235663 | 17..171 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:23 Download gff for
BS31175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20101515..20101670 | 468..623 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 447..467 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 319..446 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 172..318 | 100 | <- | Minus |
| arm_X | 20106583..20106737 | 17..171 | 100 | | Minus |
| arm_X | 20099793..20100146 | 1547..1900 | 100 | <- | Minus |
| arm_X | 20100214..20101136 | 624..1546 | 100 | <- | Minus |
BS31175.pep Sequence
Translation from 16 to 1899
> BS31175.pep
MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQ
RKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQ
SGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYY
GDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVK
KEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGD
SEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNN
EESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGT
YSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISIS
SDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSE
DGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSI
DWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLW
NLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAEN
LAQPSRDEWSRFNTHLSEIKMNQSDEV*
BS31175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-PB | 627 | CG18000-PB | 1..627 | 1..627 | 3275 | 100 | Plus |
| sw-PN | 634 | CG18000-PN | 1..634 | 1..627 | 3257 | 98.9 | Plus |
| sw-PA | 634 | CG18000-PA | 1..634 | 1..627 | 3257 | 98.9 | Plus |
| sw-PC | 626 | CG18000-PC | 1..626 | 1..627 | 3257 | 99.8 | Plus |
| sw-PD | 643 | CG18000-PD | 1..643 | 1..627 | 3248 | 97.5 | Plus |
