BS31176.complete Sequence
3884 bp assembled on 2012-09-12
GenBank Submission: KX803496
> BS31176.complete
GAAGTTATCAGTCGACATGAACAACCAGCGATATGGCGGCATCCAGTGGA
TACAGCACCACGTTTCCGCGGGCGACTCCTCCGAGGTGGACATCCTGGAG
TCGGATGGTGGAGCAGGGGCCTCGGGTGAGGATCTGGACCATGTGGCGGC
CGAGAATCTTATATTCATGGCCCGCGACGGTCAGCTAAGTGAGATAATGG
CTGCCAACGAAGCTGGTAGAACGGTCCTGGTCACCGCCGACGGCACCACG
GTGGCCTATGCGGAATCCTTCGACGATGACGCCCAGGTGGTCACCGAGGA
GGTAATCACAGACGACTGGGTGCAGCACCAAGGCGCCGAGCGAGTGGAGA
TTGCTGCCGAGCAGATAGCTGGGATTAGCAGCTCACAGGAACTGCTGGAC
ATGGAGCAGGATGAGTACACTGCGCTGAGGCCCTATCCCTGCGACTTTTG
CAGTCGGCGCTTTCGCAAGAAGGCCACCTTGAATAACCATATGCTGGCCC
ACCAAAATGATCGACCGCACCTCTGCAAGCTGTGTGGAGCGCGATTCTCA
CGACGAGCAGAGCTCATTAGTCACTTCAAGGCCCACGCAGAGGCCCAGGA
TGCCGCCGATGCCGAGGCAGCAGCGGCGGCAGCCGATTCGTCTTCTGCCA
TTAAATTCGAGCATCAGACGCAGCGGCAACTGGACGATCACTACTACGAG
CAGGAATGGCCACTCTTCCAACATCAACAGGAGCAGGAAAACGCGCAACA
GAATGTCCATCAACAGCATCAGATTGTGGAAGAGGGCGGGATTCAGCTGG
TGGCCAGTTACCCAGACACGGTAGCTCAACCAGCAGCTCCGTCGCGAGGC
AGAATCAGTCGGTTGAAGCCCAAGGAAGAAAGCAGCCAGTTCATTGTGAT
TTCCGACAAGTCGGTGGAGGACTCTAGGCCATACATGGAGCCTGAGCCGG
CTCAGCCTGTGGTTACCACGTCGGAGTTTATTGCTGTCGAACCGCCTCCT
CAGCCAAACTTTCCGGTGCTGGATCACAGCAAACCTTTTGTGTGTCAGCA
ATGCGGATTGGCCTTTGCGCGGGAAAAGGCACTAGTTTCACACACCAAGA
ATCACCGCGTGGACTCACCGTTCGAATGCAACCAGTGTCAGGAGATGTTC
TGGGACAACAGCAGCTTGCAGGAGCACCAGAAGACTCATCAGTTCGAGGA
GAGCAACTCGGAGTACGATCCTGCCTCAGCGGAGGAGAGCGGCAGTGAAT
CGGAGGCAGACGAGCAGTTGTATGGCGAATTCTATTGCAACGAATGTGGG
ATCTCTTTTCATCGCCAGGATCTACTGCGACGTCATGCCAAGATGCACTG
TAAGCCATCGGATCAGGCAGCTGTTGGTAGCAATTCCGATGTCACTGCTG
GCGGAGACGTGGAGCTTGCCAAAGATTCTTCTGGTCACTGTTGCAACACT
TGCGGAAAGTCCTTTCCTAGCGCTTTAGAGATGCTCGCCCATGCAGAAAT
CCATGCTAGGTTCCCGCCCTTCAAGTGCGTCCTATGCGGCATTAGCTTTT
ACGAGGAGCAGGCGATTAAGCGTCACCTGCACACTCGCCATCCCAGTGAA
TTGAATGCCAATTCCTGCGTTCTGTGCGGCAAAGAGTGCCGCGATCGCAA
GGCTCTGATAAAGCACGCCTGGGACCATTCGCGCGAGAAGTGCCATTCGT
GCTCCAAGTGCGGAAAGAACTTCCACAACAAAGCGCGTCTAAAGCGGCAC
ATGGCTTCGCATCGGGACAAGTCGGTTGTATGCGAGGTGTGCCAGGAAGA
ATTCCCCGACGGTCGTACGCTCTCCAACCATCGACACTCGCACAGCACTA
CTACGCCTGGCAAGCTTTTTCCGTGCCTCGAATGCGGCAAGACATTTGGT
TCGCGCAGTTCCCAGCAGATTCACGTACGGATCCACACCGGTGAGCGGCC
ATATGGCTGCCGCTACTGCTGGAAGGCTTTCGCGGATGGTGGTACTCTGC
GGAAGCACGAGAGAATCCACACCGGCGAGAAGCCATATGCCTGCTCCGTC
TGCCCACGCGCCTTTAACCAACGGGTAGTGCTGCGGGAACACATTCGCTC
CCATCATTCTGGGCTGGATGTAGCGCGGAACACCTATCACTGCACAGTCT
GTTCCGAAGACCTGGCATCGTCCAATGACCTTATTCAGCACCTGATCCAA
CACAGTGATTCAAACACAGCTAAGCAGCGACAGCCCGTTACGGGACCGCG
CAAGTACAAGCGTCGCCGTAAGCTACAGCCTCACGAGATCGCTCACATGC
GGGCGGCGAACAAGCATGTCAACGGTGATGAGGAAGAGGCCATAGGAGAA
GGCGATGCAGAGGAGTGTGCCAGTGACATCGATTTCTGCGACTTTGATGT
GGAGAACGTGGACGATATCTTCGACATGGCCGAATCACCCAAAAAAGAAA
AGCGAAAGAGGGGCTCGGCAGCCACAAAAGCTGATGCCAAACCCGTGACC
AATGGGAAAGCGGCAAAACCTGCCCAAGATAAGGGCAAAGCTAAGCCAAG
ATATGATTCCACCAGCAGTCAGCAATCGGATCGCCTTTGGGAGGAAAAGT
TCCTGCACGACAGTCAAGTGGCTCTGTTTCAGATCGATTCGCTGGTAGTG
GTCAACGACACTCATTTGCAGCCTGCTAGCTCCGCTGTGTCTGCTAACAT
ACCCAACACAAGAGGTGGATCGAAGCAGCAGGGAAAAGTTCAGGCGAAGT
CTGTAGAAGGAGCCGAAAATTTGAATAGCTCAGCTACCACATCTGACACT
ACATTCTCCGCCTCCACCTCCACTGCCAGCACTCGGAGCCGCAAGAGGGC
AGCAACCACTAAAACAGCCAGCAAAGCACCTCCTGCCAGTAATTCGCGAC
CTCGAATGATTCACACAGAGAAAGCCAAGGTGACAAAAGGAGTTGGCGGA
GACTCCACTAGTAGTTCGGCAAAGAAAACGCGCTCGAAGACCTATATAAG
TCGCACGGAGTCGCACAATCTGAGCCTCGACAAATCCCGCAGCAGTGCCT
CAAATATGGTGGATGACTATGAAATCATTTCTCCAGCTACTCATCCGCCA
AATCAGATCAGCTCCAGTCCCTTGCACATCAAACAGGAGCAGGAACAACA
ACAGCGTGTTCAACTTATGTACGATGATAACCTACTGATAGATGCTGCTC
TGCTCAGGGAGAAGACTTATGAGAAGTTTAATCCGAGCATTGTTAATGAT
CTGGAGGAGATCCTCCGCTCTCCACTGAAGCACGAGAGAAATTCTCGTCT
TCGCTTTACCAGCGAGTCATCCACCACGCCACAATATTTGCACGAAGAGG
AGCAAAACCTTATAAAAATTGAACCAACTTCTCCGGATCTGCGGGAAATG
TTGGAGGGTCAGCAAAGAGTCATCGCTCATAGCGGCAGCACTCCTTCGTC
CTCTTCATCTGCTAGAACTTCCAGACATCTGCGACAAATCACTGCCAATG
GTGCACGGGCAGGCAGCAAGAGAACAACAGGTGGCGTAGCCAGCAAGACG
TCGGCATCCCCGGGAGTGGTGGCCAAAAAATCGAACACTGCCACCAAGGT
GAGCAGCAGCAGCTCATCCTCGTACCTCTCGTACGGGGTGGATTCCTACA
ATGTAAACGTACCTGCCAGTGCCAACAACGGCGATGTGGGCAGCGGATTC
TTTTCCATCTCGGAGGTCGTTTCCGCAGCTGACGCCGCGGATGCGGCTGC
TAAAGCGGCGGCAGCTGGTAAATCGGAGCGGAAAACTCGCAGTTTCGAGT
GCGAAATGTGCTCGGCCATCTTTTATGATCGCACCCAGCTGCTGGAACAT
GTGCACATTCACATTTAAAAGCTTTCTAGACCAT
BS31176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7987-RB | 3852 | CG7987-PB | 1..3852 | 17..3868 | 19260 | 100 | Plus |
| CG7987-RA | 3852 | CG7987-PA | 1..3852 | 17..3868 | 19260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7987-RB | 4416 | CG7987-RB | 304..4156 | 17..3869 | 19265 | 100 | Plus |
| CG7987-RA | 4242 | CG7987-RA | 130..3982 | 17..3869 | 19265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14570732..14572361 | 3869..2240 | 8150 | 100 | Minus |
| 3R | 32079331 | 3R | 14573726..14574483 | 1099..342 | 3790 | 100 | Minus |
| 3R | 32079331 | 3R | 14572423..14573143 | 2239..1519 | 3590 | 99.9 | Minus |
| 3R | 32079331 | 3R | 14573208..14573636 | 1526..1098 | 2145 | 100 | Minus |
| 3R | 32079331 | 3R | 14574548..14574873 | 342..17 | 1630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:05:18 has no hits.
BS31176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-12 10:03:48 Download gff for
BS31176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7987-RB | 265..4114 | 17..3866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:50 Download gff for
BS31176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7987-RA | 130..3979 | 17..3866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:57 Download gff for
BS31176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7987-RA | 130..3979 | 17..3866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:57 Download gff for
BS31176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14570735..14572361 | 2240..3866 | 100 | <- | Minus |
| 3R | 14572423..14573137 | 1525..2239 | 100 | <- | Minus |
| 3R | 14573210..14573634 | 1100..1524 | 100 | <- | Minus |
| 3R | 14573726..14574482 | 343..1099 | 100 | <- | Minus |
| 3R | 14574548..14574873 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:50 Download gff for
BS31176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10396457..10398083 | 2240..3866 | 100 | <- | Minus |
| arm_3R | 10398145..10398859 | 1525..2239 | 100 | <- | Minus |
| arm_3R | 10398932..10399356 | 1100..1524 | 100 | <- | Minus |
| arm_3R | 10399448..10400204 | 343..1099 | 100 | <- | Minus |
| arm_3R | 10400270..10400595 | 17..342 | 100 | | Minus |
BS31176.pep Sequence
Translation from 16 to 3867
> BS31176.pep
MNNQRYGGIQWIQHHVSAGDSSEVDILESDGGAGASGEDLDHVAAENLIF
MARDGQLSEIMAANEAGRTVLVTADGTTVAYAESFDDDAQVVTEEVITDD
WVQHQGAERVEIAAEQIAGISSSQELLDMEQDEYTALRPYPCDFCSRRFR
KKATLNNHMLAHQNDRPHLCKLCGARFSRRAELISHFKAHAEAQDAADAE
AAAAAADSSSAIKFEHQTQRQLDDHYYEQEWPLFQHQQEQENAQQNVHQQ
HQIVEEGGIQLVASYPDTVAQPAAPSRGRISRLKPKEESSQFIVISDKSV
EDSRPYMEPEPAQPVVTTSEFIAVEPPPQPNFPVLDHSKPFVCQQCGLAF
AREKALVSHTKNHRVDSPFECNQCQEMFWDNSSLQEHQKTHQFEESNSEY
DPASAEESGSESEADEQLYGEFYCNECGISFHRQDLLRRHAKMHCKPSDQ
AAVGSNSDVTAGGDVELAKDSSGHCCNTCGKSFPSALEMLAHAEIHARFP
PFKCVLCGISFYEEQAIKRHLHTRHPSELNANSCVLCGKECRDRKALIKH
AWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVVCEVCQEEFPDGR
TLSNHRHSHSTTTPGKLFPCLECGKTFGSRSSQQIHVRIHTGERPYGCRY
CWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGL
DVARNTYHCTVCSEDLASSNDLIQHLIQHSDSNTAKQRQPVTGPRKYKRR
RKLQPHEIAHMRAANKHVNGDEEEAIGEGDAEECASDIDFCDFDVENVDD
IFDMAESPKKEKRKRGSAATKADAKPVTNGKAAKPAQDKGKAKPRYDSTS
SQQSDRLWEEKFLHDSQVALFQIDSLVVVNDTHLQPASSAVSANIPNTRG
GSKQQGKVQAKSVEGAENLNSSATTSDTTFSASTSTASTRSRKRAATTKT
ASKAPPASNSRPRMIHTEKAKVTKGVGGDSTSSSAKKTRSKTYISRTESH
NLSLDKSRSSASNMVDDYEIISPATHPPNQISSSPLHIKQEQEQQQRVQL
MYDDNLLIDAALLREKTYEKFNPSIVNDLEEILRSPLKHERNSRLRFTSE
SSTTPQYLHEEEQNLIKIEPTSPDLREMLEGQQRVIAHSGSTPSSSSSAR
TSRHLRQITANGARAGSKRTTGGVASKTSASPGVVAKKSNTATKVSSSSS
SSYLSYGVDSYNVNVPASANNGDVGSGFFSISEVVSAADAADAAAKAAAA
GKSERKTRSFECEMCSAIFYDRTQLLEHVHIHI*
BS31176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7987-PB | 1283 | CG7987-PB | 1..1283 | 1..1283 | 6723 | 100 | Plus |
| CG7987-PA | 1283 | CG7987-PA | 1..1283 | 1..1283 | 6723 | 100 | Plus |
| crol-PI | 962 | CG14938-PI | 247..632 | 339..726 | 474 | 28.6 | Plus |
| crol-PE | 962 | CG14938-PE | 247..632 | 339..726 | 474 | 28.6 | Plus |
| crol-PA | 962 | CG14938-PA | 247..632 | 339..726 | 474 | 28.6 | Plus |
| crol-PI | 962 | CG14938-PI | 332..725 | 340..697 | 437 | 28.1 | Plus |
| crol-PE | 962 | CG14938-PE | 332..725 | 340..697 | 437 | 28.1 | Plus |
| crol-PI | 962 | CG14938-PI | 223..552 | 371..730 | 393 | 28.3 | Plus |
| crol-PE | 962 | CG14938-PE | 223..552 | 371..730 | 393 | 28.3 | Plus |
| crol-PI | 962 | CG14938-PI | 195..530 | 454..736 | 362 | 27.9 | Plus |
| crol-PE | 962 | CG14938-PE | 195..530 | 454..736 | 362 | 27.9 | Plus |
| crol-PI | 962 | CG14938-PI | 556..729 | 340..529 | 180 | 25.5 | Plus |
| crol-PE | 962 | CG14938-PE | 556..729 | 340..529 | 180 | 25.5 | Plus |
