BS31189.complete Sequence
4358 bp assembled on 2012-09-12
GenBank Submission: KX804400
> BS31189.complete
GAAGTTATCAGTCGACATGTTTAACAGATTCCGATTGGTGCACAAACAGC
TGCGGTTATATAAGAATTTCGGGCTGCTGGGCCAGAAGGCCAGCGTGGGA
CTCACATTGCCGATCATCAGCTTGTCCAGGCCGTACATGGCGTATATGGG
CACCGAGAGGAGCGTGGTGATGATCACCGCACCAGCTACGAAGGAATTCG
CAGAGAGTTCTGAGCGCAGCAATAGCAGCAAGAAGACTACCAACAAAGAG
CAGAGCGACAAATCAGCGGAGAGCAGGATGGCCACCAGCGGTATTGTCGA
GTCATTTCCCACGGGCGCACTGGTGCCCAAGGCGGAGACGGGAGTCCTGA
ACTTTCTGCAGAAGTACCCGGAGTACGATGGACGCGACGTCACCATAGCC
ATCTTCGATTCCGGCGTCGATCCCCGGGCAACGGGACTGGAGACGCTGTG
CGATGGAAAGACCGTTAAAGTAATAGAGCGGTACGACTGTTCCGGATGCG
GCGACGTGGACATGAAGAAGAAGGTGACGCCGGACGAGAACGGCAACATT
AAGGGCCTGTCCGGAAACTCGCTCAAGCTGAGTCCGGAGCTGATGGCTCT
GAACACAGATCCGGAGAAGGCGGTGCGGGTAGGCCTCAAGAGCTTCAGCG
ATTTGTTGCCCTCCAAGGTGCGGAACAACATTGTGGCCCAGGCCAAGCTG
AAGCACTGGGACAAGCCGCACAAGACGGCCACTGCAAACGCCAGTCGCAA
GATTGTTGAATTTGAGTCACAAAATCCAGGAGAAGCCTCAAAACTGCCCT
GGGACAAGAAGATATTGAAAGAGAATCTAGACTTTGAGCTAGAGATGTTG
AATAGCTACGAGAAGGTGTACGGCGACATTAAGACCTCCTACGATTGCAT
CCTTTTTCCCACGGCCGACGGATGGCTGACAATCGTCGACACCACGGAGC
AGGGCGATCTGGATCAGGCTCTGCGCATTGGCGAGTATTCCCGCACGCAC
GAGACCCGCAATGTGGACGACTTTCTTTCCATATCGGTAAACGTCCACGA
CGAGGGCAACGTACTGGAGGTGGTCGGCATGAGCTCACCCCACGGCACCC
ACGTATCGTCTATTGCCAGCGGCAACCATAGCTCCCGGGACGTGGATGGC
GTGGCGCCGAATGCTAAGATCGTTTCTATGACCATCGGTGATGGTCGACT
TGGGTCTATGGAGACCGGCACGGCACTAGTGCGTGCCATGACTAAGGTGA
TGGAACTATGTCGCGATGGCAGACGCATCGATGTGATCAACATGAGCTAT
GGCGAGCATGCCAATTGGTCAAATTCCGGCCGCATTGGGGAGCTCATGAA
CGAGGTTGTCAACAAGTATGGCGTGGTGTGGGTGGCATCGGCCGGCAACC
ATGGTCCGGCACTTTGTACTGTGGGAACTCCGCCGGACATCAGCCAGCCC
AGTTTGATCGGCGTGGGCGCGTACGTATCACCCCAAATGATGGAGGCCGA
GTATGCGATGCGAGAAAAGCTGCCCGGGAACGTGTACACCTGGACATCGC
GAGATCCCTGCATCGACGGAGGTCAAGGCGTTACCGTATGCGCTCCGGGC
GGAGCCATTGCGTCCGTGCCACAGTTTACTATGAGCAAGTCCCAGCTGAT
GAACGGTACCAGCATGGCGGCACCTCACGTCGCCGGCGCAGTGGCGCTGC
TCATCTCCGGTCTGAAGCAACAGAACATCGAGTATTCGCCGTACAGTATT
AAGCGAGCGATCAGCGTCACTGCCACCAAACTGGGCTATGTAGATCCCTT
TGCTCAGGGCCATGGCTTGCTCAATGTCGAGAAGGCATTCGAGCATTTGA
CGGAGCACCGCCAGTCCAAGGATAATATGCTCAGGTTCTCCGTGCGCGTG
GGCAACAACGCAGACAAGGGCATTCATTTGCGTCAGGGCGTGCAGCGTAA
CTCCATCGATTACAACGTTTATATAGAGCCCATCTTCTACAATGACAAGG
AGGCGGATCCCAAGGACAAGTTTAACTTCAATGTACGGCTAAATCTGATT
GCCTCGCAGCCGTGGGTGCAGTGTGGAGCTTTCTTGGATCTCAGCTATGG
CACCCGCTCCATTGCCGTGCGCGTCGATCCCACTGGACTCCAGCCAGGCG
TTCACAGCGCTGTGATTCGGGCTTATGACACTGACTGCGTACAGAAGGGT
TCTCTCTTTGAGATTCCTGTCACGGTGGTGCAGCCCCATGTGCTGGAGTC
GGATCAGAACACGCCCGTCTTCGAACCCGCCTCTTCCAAGGGAGACAACA
GCGTGGAGTTTCAGCCAAACACCATTCAAAGAGACTTCATCCTGGTGCCA
GAACGTGCTACTTGGGCGGAGTTGCGTATGCGTATAACCGATCCCAATCG
TGGCGAGGACATTGGAAAGTTCTTTGTACACACGAACCAACTTCTTCCCA
AGCAATCCTGTCGTAAGCTTGAGACCATGAAGATCGTATCGGTTGGCTCG
GAAAACGAATCTATAATGGCTTTTAAAGTTAAGTCTGGCAGGATTCTGGA
GCTATGCATTGCCAAGTACTGGTCCAACTACGGCCAGAGTCACCTGAAGT
ACAGCTTGCGTTTCCGTGGCGTGGAAGCGCACAATCCCAATGCCTACGTC
ATGCATGCGGGCAGGGGAATTCATAAGCTGGAGATTGAGGCCCTGGTTGC
CGAGGATGTGCAGCCCCAGCTACAGCTAAAGAATGCCGAAGTGGTGCTAA
AACCGACCGAGGCCAAGATCTCGCCGCTAAGCGCCACACGAGACGTCATC
CCAGATGGACGTCAGGTGTATCAGAACCTGCTGGCCTTTAACTTGAACGT
GGCCAAGGCCGCAGATGTGTCGATATACGCACCGATCTTTAACGACTTGT
TGTATGAAGCGGAGTTTGAGTCACAGATGTGGATGCTTTTTGATGCAAAC
AAGGCCCTGGTGGCCACCGGCGATGCTCACTCCCACACTTCCTTCACAAA
GCTCGATAAGGGCGAATACACAATCAGACTGCAGGTGCGTCACGAGAAGC
GCGACCTGCTGGAGAAGATCTCGGAGGCAAATCTGGTGGCCTCATTCAAG
CTGACTAGCCCCCTCACCCTTGATTTCTATGAGAACTACAATCAGTGCAT
AGTGGGAGGTCGTAAATACGTCTCGAGTCCGCTAAGGCTGTCCACTCGGG
TGCTTTATATCGCTCCTATTACCCAAGAGCGACTTACCAAGGCCAATCTG
CCCGCTCAATGCGCCTGGCTGAGCGGCAATCTGGTATTCCCGCAAGATGA
GGTCGGACGGCGAGTGGCTCAGCATCCATTTACTTACATCCTCAATCCCG
CTGAGAAAAAGTCACACACGAATGGCTCGAGCAACGGTTCCAGCGCTGCA
GGATCCACAGCTACGGCAGCTGCTGTCACCACTGCTAATGGCGCAAAACC
GAAAGCTCCGGCGACTCCACAAGCGGCCACCTCAGTGACCAATCCTGCGG
CCGGCGATGGAATTTCTGTTCAGAACGACCCGCCTGTGGACAGCAGTGGG
AGTCCCGCCTCACCCAAAAAGGGCAAGGCCAATGCCGACGATTATGCCGA
AAGTTTTCGCGACTTTCAATGTTCGCAGATTGTCAAGTGTGAACTGGAAA
TGGCAGAGAAAATCTATAATGATGTAGTCGCTGCCCATCCCAAGCATTTG
CAGGCAAACCTGCTACTTATCCAGAACATCGAGTCCAATCAGCTGAAGTC
GCAACTGCCGCTGACTTTCGTCAATGCTCAAAAGACATCGCCACCAGAGG
CAGGCGAGAGCGCCGACAAGCAAAAGGAGGATCAAAAGAAAGTACGAAGC
GCCCTGGAGCGAATTGTTAAGCTGGCCGACAAGGTGATCCAGGAGACCGA
TTCCGAGGCACTGCTCTCCTACTACGGTCTGAAGAACGACACTCGTGCCG
ATGCAGCCAAGATAAAGACCAACATGGACAAACAGAAAAACACTCTCATT
GAGGCGCTAAGCAAGAAGGGCATTGCTGTGGCAAAGCTGGCTGTATTAGA
CGACTGTATCAAGGATAGCCTGGCTGAGATCAACGAGCTGTATACCGAGA
TTATCAAGTTCGTGGACGCCAACGACTCCAAGGCCATCCAGTTCGCTCTG
TGGCACGCCTATGCCCATGGCCACTACGGTCGCATGTACAAGTATGTGGT
TAAGCTAATCGAGGAGAAGCGAACCCGCGATCACTTCGTGGAGCTGGCCG
CCATCAACGGCGCCCTGGGTCACGAGCACATCCGTACTGTCATCAACCGT
ATGATGATCACTGCCTTTCCCAGCAGCTTCCGTTTGTTCTGAAAGCTTTC
TAGACCAT
BS31189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RD | 4326 | CG3991-PD | 1..4326 | 17..4342 | 21630 | 100 | Plus |
| TppII-RF | 4065 | CG3991-PF | 1..4065 | 278..4342 | 20325 | 100 | Plus |
| TppII-RA | 4065 | CG3991-PA | 1..4065 | 278..4342 | 20325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RD | 4641 | CG3991-RD | 207..4532 | 17..4342 | 21630 | 100 | Plus |
| TppII-RF | 4375 | CG3991-RF | 107..4266 | 183..4342 | 20800 | 100 | Plus |
| TppII-RA | 4287 | CG3991-RA | 19..4178 | 183..4342 | 20800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13153814..13154809 | 3641..2646 | 4980 | 100 | Minus |
| 2R | 25286936 | 2R | 13156074..13156631 | 1886..1329 | 2790 | 100 | Minus |
| 2R | 25286936 | 2R | 13156887..13157439 | 1329..777 | 2765 | 100 | Minus |
| 2R | 25286936 | 2R | 13152994..13153366 | 4342..3970 | 1865 | 100 | Minus |
| 2R | 25286936 | 2R | 13157495..13157834 | 780..441 | 1700 | 100 | Minus |
| 2R | 25286936 | 2R | 13153425..13153753 | 3969..3641 | 1645 | 100 | Minus |
| 2R | 25286936 | 2R | 13158020..13158279 | 442..183 | 1300 | 100 | Minus |
| 2R | 25286936 | 2R | 13155269..13155474 | 2369..2164 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 13158767..13158935 | 185..17 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 13155047..13155211 | 2533..2369 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 13155536..13155694 | 2164..2006 | 795 | 100 | Minus |
| 2R | 25286936 | 2R | 13155748..13155871 | 2006..1883 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 13154870..13154983 | 2645..2532 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:05:47 has no hits.
BS31189.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-12 10:03:50 Download gff for
BS31189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 162..4480 | 23..4341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:53 Download gff for
BS31189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 213..4531 | 23..4341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:05 Download gff for
BS31189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 213..4531 | 23..4341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:05 Download gff for
BS31189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13155748..13155869 | 1885..2006 | 100 | <- | Minus |
| 2R | 13152995..13153366 | 3970..4341 | 100 | <- | Minus |
| 2R | 13153425..13153752 | 3642..3969 | 100 | <- | Minus |
| 2R | 13153814..13154809 | 2646..3641 | 100 | <- | Minus |
| 2R | 13154870..13154981 | 2534..2645 | 100 | <- | Minus |
| 2R | 13155047..13155210 | 2370..2533 | 100 | <- | Minus |
| 2R | 13155269..13155474 | 2164..2369 | 100 | <- | Minus |
| 2R | 13155537..13155693 | 2007..2163 | 100 | <- | Minus |
| 2R | 13156076..13156630 | 1330..1884 | 100 | <- | Minus |
| 2R | 13156887..13157436 | 780..1329 | 100 | <- | Minus |
| 2R | 13157496..13157832 | 443..779 | 100 | <- | Minus |
| 2R | 13158020..13158276 | 186..442 | 100 | <- | Minus |
| 2R | 13158767..13158929 | 23..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:53 Download gff for
BS31189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9046272..9046434 | 23..185 | 100 | | Minus |
| arm_2R | 9040500..9040871 | 3970..4341 | 100 | <- | Minus |
| arm_2R | 9040930..9041257 | 3642..3969 | 100 | <- | Minus |
| arm_2R | 9045001..9045337 | 443..779 | 100 | <- | Minus |
| arm_2R | 9045525..9045781 | 186..442 | 100 | <- | Minus |
| arm_2R | 9041319..9042314 | 2646..3641 | 100 | <- | Minus |
| arm_2R | 9042375..9042486 | 2534..2645 | 100 | <- | Minus |
| arm_2R | 9042552..9042715 | 2370..2533 | 100 | <- | Minus |
| arm_2R | 9042774..9042979 | 2164..2369 | 100 | <- | Minus |
| arm_2R | 9043042..9043198 | 2007..2163 | 100 | <- | Minus |
| arm_2R | 9043253..9043374 | 1885..2006 | 100 | <- | Minus |
| arm_2R | 9043581..9044135 | 1330..1884 | 100 | <- | Minus |
| arm_2R | 9044392..9044941 | 780..1329 | 100 | <- | Minus |
BS31189.pep Sequence
Translation from 16 to 4341
> BS31189.pep
MFNRFRLVHKQLRLYKNFGLLGQKASVGLTLPIISLSRPYMAYMGTERSV
VMITAPATKEFAESSERSNSSKKTTNKEQSDKSAESRMATSGIVESFPTG
ALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLETLCDGKTV
KVIERYDCSGCGDVDMKKKVTPDENGNIKGLSGNSLKLSPELMALNTDPE
KAVRVGLKSFSDLLPSKVRNNIVAQAKLKHWDKPHKTATANASRKIVEFE
SQNPGEASKLPWDKKILKENLDFELEMLNSYEKVYGDIKTSYDCILFPTA
DGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDFLSISVNVHDEGNVL
EVVGMSSPHGTHVSSIASGNHSSRDVDGVAPNAKIVSMTIGDGRLGSMET
GTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNK
YGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMRE
KLPGNVYTWTSRDPCIDGGQGVTVCAPGGAIASVPQFTMSKSQLMNGTSM
AAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDPFAQGHG
LLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYN
VYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIA
VRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIPVTVVQPHVLESDQNTP
VFEPASSKGDNSVEFQPNTIQRDFILVPERATWAELRMRITDPNRGEDIG
KFFVHTNQLLPKQSCRKLETMKIVSVGSENESIMAFKVKSGRILELCIAK
YWSNYGQSHLKYSLRFRGVEAHNPNAYVMHAGRGIHKLEIEALVAEDVQP
QLQLKNAEVVLKPTEAKISPLSATRDVIPDGRQVYQNLLAFNLNVAKAAD
VSIYAPIFNDLLYEAEFESQMWMLFDANKALVATGDAHSHTSFTKLDKGE
YTIRLQVRHEKRDLLEKISEANLVASFKLTSPLTLDFYENYNQCIVGGRK
YVSSPLRLSTRVLYIAPITQERLTKANLPAQCAWLSGNLVFPQDEVGRRV
AQHPFTYILNPAEKKSHTNGSSNGSSAAGSTATAAAVTTANGAKPKAPAT
PQAATSVTNPAAGDGISVQNDPPVDSSGSPASPKKGKANADDYAESFRDF
QCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLT
FVNAQKTSPPEAGESADKQKEDQKKVRSALERIVKLADKVIQETDSEALL
SYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKD
SLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE
KRTRDHFVELAAINGALGHEHIRTVINRMMITAFPSSFRLF*
BS31189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-PD | 1441 | CG3991-PD | 1..1441 | 1..1441 | 7423 | 100 | Plus |
| TppII-PF | 1354 | CG3991-PF | 1..1354 | 88..1441 | 6993 | 100 | Plus |
| TppII-PA | 1354 | CG3991-PA | 1..1354 | 88..1441 | 6993 | 100 | Plus |
| TppII-PE | 1375 | CG3991-PE | 1..1375 | 88..1441 | 6961 | 98.5 | Plus |
| S1P-PA | 1012 | CG7169-PA | 200..431 | 359..615 | 176 | 27.2 | Plus |
