BS31193.complete Sequence
2297 bp assembled on 2012-07-30
GenBank Submission: KX803651
> BS31193.complete
GAAGTTATCAGTCGACATGGCATATCCACGCGACTATGGTATCGAACACA
TCCTCACCTGCGAGGCGGACAACTGCCAGGTGCGTTTGGATTTTACCGAC
TTCCAGCTGGGCCTCACCTCCACCCTAGAGATCTTCGACTCCAATGGCCA
GATGCTGGACTCCTATACGGGTGAGCACTTCCGTCCGCCGATCACGGTGA
GCAGCGGCAAGTCTCTGCTCCTGCAGTTTCGAGGAAATTCCGCCACCGGA
GTGGGTTTTCGCGCGGAGGTTAGCTTCGTATCCTCCAAGCAGCTCAAGGA
CGAGCGACTGGTGCCCTACACAGATTGCGGGGGAATGGTTACCGGACCTG
GTGGCGCCATCACCATGATGAACATGATCGAAAATGCCACGGACGTGCGG
CTGTTTGACTGCATCTGGATTATAAAGCCCGGCAACAACTACATGATGAT
GAAAACCCACATCTCGTTGAGAGTGGATGACTTCTACGGCATGGCCGCCA
GATCTGAGCTCACAATACGGCAGGGCACCACCTCGGATGCCGTGGAGATC
GAGAATGTGATGTGGCCGAACAATGGGCTGAGCAAGGAGAGTCATGTGGC
GCCCATCCTCAATGGCTACTACATTCGACTGCGTGGGGTATTCGGGATGT
CCTCCAAGCTGGCCATCGTCTACAGCGTGTTCAACTACTTGAATTGCTAT
ATTGGCTCGGAGTTTCTGTGCGGGAACAATCACTGCATATCCATTCGCCT
CCACTGCGATGGCTTCGACCATTGTGGGGATGGCAGCGATGAGCCGGATT
CCTGCGAGGAGGACTGGGCACACCTGCATCACGATCGTCGCTGGTACTCT
CACAAGCCCAACTATTATTTCCCCAAGATAGACCAGTATCCAGATCTTAA
GACGGCCACGGGAATCTTTATCATCAGCACACTTGGCATATTTGGTGTGC
TGTCCGGCTGGATGGTGATCCTGTACAGGATGGGGGTTAGAGCACGACAC
CAACGTGAGCTTCAAAGCCACCTGCAGACGATCAGTGAGCTGTTGGATCG
CCAGGACGAGGATCGCACGCCCGATGAGCCACCCAGCTACGAGGCACCAC
CCGATTACGAGGAGGTCATCAAGGTAGGAATGCAACAGGAGCTACGGGAG
CCACGTCGCCAGAGACGGGCCCGTCGAGCTCCGCCTAGAGATCGGAGCTG
CAGTCGCGCCGCAAGCAATTGCACCGTGCAATCGGTACTCCCACTGCATC
GCAGCTGCACCCTGGAAAGGGATCAAGAACAGCCCAGTACCTCGGCGGCG
GCAATGACCCATGCGGTGGCTGCCACGGATACAACGGAGGATGCCGAACA
CGTCCAGACGATGGCCCAGCGAATGCTCCTCGCCACGGCTATTTGTGGCA
CTGCAGGCACGTCTCTCCCGGCAGCAAAGGAGTCAGGGCAGCGGGTCCAA
TCCGTGGGGATTTCAACGAGCCCGTCATCGTTATCCGCTGGGGGTGAACT
ACCCACAGCAGGTGGGTCAGCCACAACGCCCGGCAGCACGGCAGATGAGT
GCACCCAGGGAGGCGACTCACTTAGCATTTCACTCACTCTAGGCTTGCCC
TCCACCACGGCAGAGAGTCCTGTGACAACCGACCAGAACCAATTGCAGAA
ACAAAGTCCGGAGCAGACAATCAGCAATTGCACGGAGCACACCTTCCTAA
AGAGATCGTGGTTGGTGGTGCAACAGGTTCCACCTGGCAGGGGTTACCGT
GTCCGGAGGCTGCGACATACCTTCTCCTCTCCTGAAGCATTCACTAGCGA
TGAGCTGCATCTGCCGTACCCGGATTTCCTGAGCTACGGCACTAATCTTC
CACATGAACGGAGCAGTAGTAATTTCGGATCCGAGTTGTCGAGGGACCCA
TCGAGTTATAGTGTGGGCAAACGAGCTCGCTTGACGCCCGAGGACACAAG
TGGATCGGAGACCATTACCCAGGAGATGGAGCAATCCAACCAGACACTCC
AGTCCCATGTGATAGTGGAAAGTCACCCGAATCACAGCGAAAGTGAGAGC
GAAGCGGAGCAGCAGGTGTCCTGCTTTGGAGCCGTAGCCCAGCGGCCCAA
GAGGCGTCATCGGGGTCATGTGAGGAGCCGATCCTTTAGCAATGCCAGAG
GTGGCAGTGCCGGAAGGAGGCGTCTCATGCAGCGCAGCTCGTCGGCCGAT
CTTTTGATGAACTACGCGACAATGGCGGTATCGACGCCACAAAAAACGAG
CGAGGCAATGCAGCGATTGTTCTTCATCTGAAAGCTTTCTAGACCAT
BS31193.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17352-RA | 2898 | CG17352-PA | 634..2898 | 17..2281 | 11325 | 100 | Plus |
| CG17352-RB | 2223 | CG17352-PB | 634..2223 | 17..1592 | 7705 | 99.1 | Plus |
| CG17352-RC | 2055 | CG17352-PC | 634..2015 | 17..1398 | 6910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17352-RE | 3223 | CG17352-RE | 785..3049 | 17..2281 | 11325 | 100 | Plus |
| CG17352-RA | 3160 | CG17352-RA | 722..2986 | 17..2281 | 11325 | 100 | Plus |
| CG17352-RB | 3174 | CG17352-RB | 722..3000 | 17..2281 | 11150 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8352529..8353413 | 2281..1397 | 4425 | 100 | Minus |
| 3L | 28110227 | 3L | 8353478..8354183 | 1398..693 | 3530 | 100 | Minus |
| 3L | 28110227 | 3L | 8354242..8354612 | 692..322 | 1855 | 100 | Minus |
| 3L | 28110227 | 3L | 8355144..8355450 | 323..17 | 1535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:08:21 has no hits.
BS31193.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:45 Download gff for
BS31193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RA | 722..2985 | 17..2280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:43 Download gff for
BS31193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RA | 722..2985 | 17..2280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:59 Download gff for
BS31193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RA | 722..2985 | 17..2280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:59 Download gff for
BS31193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8352530..8353412 | 1398..2280 | 100 | <- | Minus |
| 3L | 8353479..8354183 | 693..1397 | 100 | <- | Minus |
| 3L | 8354242..8354610 | 324..692 | 100 | <- | Minus |
| 3L | 8355144..8355450 | 17..323 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:43 Download gff for
BS31193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8345630..8346512 | 1398..2280 | 100 | <- | Minus |
| arm_3L | 8346579..8347283 | 693..1397 | 100 | <- | Minus |
| arm_3L | 8347342..8347710 | 324..692 | 100 | <- | Minus |
| arm_3L | 8348244..8348550 | 17..323 | 100 | | Minus |
BS31193.pep Sequence
Translation from 16 to 2280
> BS31193.pep
MAYPRDYGIEHILTCEADNCQVRLDFTDFQLGLTSTLEIFDSNGQMLDSY
TGEHFRPPITVSSGKSLLLQFRGNSATGVGFRAEVSFVSSKQLKDERLVP
YTDCGGMVTGPGGAITMMNMIENATDVRLFDCIWIIKPGNNYMMMKTHIS
LRVDDFYGMAARSELTIRQGTTSDAVEIENVMWPNNGLSKESHVAPILNG
YYIRLRGVFGMSSKLAIVYSVFNYLNCYIGSEFLCGNNHCISIRLHCDGF
DHCGDGSDEPDSCEEDWAHLHHDRRWYSHKPNYYFPKIDQYPDLKTATGI
FIISTLGIFGVLSGWMVILYRMGVRARHQRELQSHLQTISELLDRQDEDR
TPDEPPSYEAPPDYEEVIKVGMQQELREPRRQRRARRAPPRDRSCSRAAS
NCTVQSVLPLHRSCTLERDQEQPSTSAAAMTHAVAATDTTEDAEHVQTMA
QRMLLATAICGTAGTSLPAAKESGQRVQSVGISTSPSSLSAGGELPTAGG
SATTPGSTADECTQGGDSLSISLTLGLPSTTAESPVTTDQNQLQKQSPEQ
TISNCTEHTFLKRSWLVVQQVPPGRGYRVRRLRHTFSSPEAFTSDELHLP
YPDFLSYGTNLPHERSSSNFGSELSRDPSSYSVGKRARLTPEDTSGSETI
TQEMEQSNQTLQSHVIVESHPNHSESESEAEQQVSCFGAVAQRPKRRHRG
HVRSRSFSNARGGSAGRRRLMQRSSSADLLMNYATMAVSTPQKTSEAMQR
LFFI*
BS31193.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17352-PA | 965 | CG17352-PA | 212..965 | 1..754 | 3958 | 100 | Plus |
| CG17352-PB | 740 | CG17352-PB | 212..692 | 1..481 | 2469 | 96.9 | Plus |
| CG17352-PC | 684 | CG17352-PC | 212..672 | 1..461 | 2464 | 100 | Plus |
