BS31194.complete Sequence
2156 bp assembled on 2012-07-30
GenBank Submission: KX801003
> BS31194.complete
GAAGTTATCAGTCGACATGGCGAATAGATTAGGAAACCATGAAGTTACCC
GCACCGCACGTGAAGTGCAGCAAAACTTTGCCGAGTCGCTCGGCTACGCG
GAAGAGATAATCTGGGATCTGTTGTCCCATGAACAACATGACGTGCTAAG
GGGCAAACTCTGTCAATTGATTCGTGATTCTCCGGAACCGAAAACTGCAA
CGGAAACTGAAAAAGACAGAAAAATCCGGCTGAAGGTCAACGCAGATAAT
GAGCGCGCCCGTCAGATCATTTTCGATTCCGTTTGGCAGCAACGTGAGTT
GGACTTACAGATTGTATATAGTATAGTACATTTTTTCGCTGCCTTAACTG
CGTACAATTGTTTTCCAGGAAAGTATACCAACCGTCAATCGCTGACGGCG
ATCATTTACGTAATGGTGGTAACTGACGAAACGGACGTCAATCGCGCCGA
GGACGCCAGAGTCTTCAGCGTGCACCCAGTCTTTCGGGCCCGTCGATGCG
TCGTTGGCAGTAGTGGCACCAGCAGCGTCAGCTCGAATTGCTGCAATCTG
TTTATCGACGAGCTTGGTCGGGTCTACCAAAACTGGGAGATGTATGTGAC
CACCAACGAGTTGCCTGCCGGAGTGATGGTGGCCCCAGAGAAGGGTATTT
ACCGCTTGGTCAGGGATCAAGTACGTCTGGATAAGTACACAACGCCGGCG
GGCACGACCAACAGGAAGGTGCTGGGCTACCTGGATACTGGGTCGGCAGT
CGGAGGATTTTTTGCTGCCTGTGTGCCCATTGCTGCCCTGCTAACGCTGC
CCGTATCCGCTCCGCTGATGGGCGCAGCGGGAGTAGTAGGTTTGGCCAGT
GCTGGATACGCCGCATCGCGGTCTGGCAGCAAGCTATTCGATCGCAGCCA
ACATGAGCAGTCTATCAATGTGACGGACCGCGAAGCGCGTGGTCACTGGT
TGGGCGTGGCTGGTGGCACTGTGGGATTGGCAGCGGCTGGGGCCACCACA
GTCTTGACAACGGCCACAAATGCTGGACGCGAGGTGGGAGCGATCACCCA
ACTGACTGTGAATAGCATGAACATATCCTCGATTGTGGTATCGGGCACTG
GAGTTGCCAATGGTGTGCTGGATCTGATATTGAAAGCAAAAGACGGTGAC
GAAATAGTTGCGATGGATGTTTTGCAATTGTCCGCTTCGTTGGTGCTGCT
CACGCACAGCGTCTACAACTTTAAATTGGCTTCGACCATAATTAATGAGA
CAAGCAATGCTAATATTGCCGACTATCGTAAAAACCTTTCTAATAGGCAG
CGGCGAACCTTTGACAAGGCTGCCAAGGAGACCGTTCGGATGCAAGGCAA
CACTCGCGGCAAACTGGACATTATACGCAACGTAAACGAAATTTCGCCAC
AAGAGTTTAATGATCTTTTTAAGATCAACAAAAACTTGAATCAGGAGGGC
GTGCGATACTCATTCGCACCCGATGGCAAAGGATTTTTACTAAATGGCGA
TGTGCAGACGACGGGTGCGGAATTGCGAGCTAGTGTACAACATAACCAAG
GAGGGAATGTCCTAGGCAAAGTTAGTCAGCCCATTCCCGGTAGCCATGCG
GGTTCTGGTCGCCTTCAACTGGGCGGCGTTAATCAGGTTTCCCGTCTAAT
CGGACCGCTGCCCACATCCCATCCTCGACAGGAACCCAGTACCTATGCCG
CCGGCGTGTTCGCCTTGGAGCTAAGCTCTGTGTTGGTGGGCGGTGTTGTT
TTCGTACTGGAGAAATACGGAAAAATCATATTTGAGCACGTGATCAATGC
TGAAAGTTTTGAGAGCCTAATCAACATCATGGCCAATAAGCTTGATCCAA
AAGTCTTTGACCATATAATGCTATTGACCAGAGCCTTCATGGACACCATG
CTGGAAGACCTCACCTCGGTGCTAAAGTTCTTTATATCAACGGAATCCGT
TCTTTACCGCATTTTGTTGTACATTTTACGGAACTTCGAGGACGTGCAAC
TTTCGGTTATTGCGGATCACACTTGTGAGATCGTAGAAGCCGTAAGGGTG
TACTTCATGTCCCTGAATCCAAATGCGTTCCCGGGTCTCCTTCAGAAGTG
TCCGAAATGTATCGGCCACTTCAGCGTTTGTCCCTTGTAAAAGCTTTCTA
GACCAT
BS31194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pst-RF | 2124 | CG8588-PF | 1..2124 | 17..2140 | 10620 | 100 | Plus |
| pst-RG | 2049 | CG8588-PG | 278..2049 | 369..2140 | 8860 | 100 | Plus |
| pst-RE | 2049 | CG8588-PE | 278..2049 | 369..2140 | 8860 | 100 | Plus |
| pst-RG | 2049 | CG8588-PG | 1..278 | 17..294 | 1390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pst-RF | 2479 | CG8588-RF | 93..2216 | 17..2140 | 10620 | 100 | Plus |
| pst-RG | 2404 | CG8588-RG | 370..2141 | 369..2140 | 8860 | 100 | Plus |
| pst-RE | 2551 | CG8588-RE | 517..2288 | 369..2140 | 8860 | 100 | Plus |
| pst-RG | 2404 | CG8588-RG | 93..370 | 17..294 | 1390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7357538..7358376 | 2140..1302 | 4195 | 100 | Minus |
| 3L | 28110227 | 3L | 7358851..7359390 | 1042..503 | 2700 | 100 | Minus |
| 3L | 28110227 | 3L | 7359468..7359850 | 503..121 | 1915 | 100 | Minus |
| 3L | 28110227 | 3L | 7358445..7358616 | 1303..1132 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 7359919..7360024 | 122..17 | 530 | 100 | Minus |
| 3L | 28110227 | 3L | 7358691..7358781 | 1132..1042 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:06:43 has no hits.
BS31194.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:42 Download gff for
BS31194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pst-RF | 240..2361 | 17..2138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:28 Download gff for
BS31194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pst-RF | 93..2214 | 17..2138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:19 Download gff for
BS31194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pst-RF | 93..2214 | 17..2138 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:19 Download gff for
BS31194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7358446..7358611 | 1137..1302 | 100 | <- | Minus |
| 3L | 7358687..7358780 | 1043..1136 | 96 | <- | Minus |
| 3L | 7357540..7358375 | 1303..2138 | 100 | <- | Minus |
| 3L | 7358851..7359389 | 504..1042 | 100 | <- | Minus |
| 3L | 7359468..7359850 | 121..503 | 100 | <- | Minus |
| 3L | 7359921..7360024 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:28 Download gff for
BS31194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7350640..7351475 | 1303..2138 | 100 | <- | Minus |
| arm_3L | 7351546..7351711 | 1137..1302 | 100 | <- | Minus |
| arm_3L | 7351787..7351880 | 1043..1136 | 96 | <- | Minus |
| arm_3L | 7351951..7352489 | 504..1042 | 100 | <- | Minus |
| arm_3L | 7352568..7352950 | 121..503 | 100 | <- | Minus |
| arm_3L | 7353021..7353124 | 17..120 | 100 | | Minus |
BS31194.pep Sequence
Translation from 16 to 2139
> BS31194.pep
MANRLGNHEVTRTAREVQQNFAESLGYAEEIIWDLLSHEQHDVLRGKLCQ
LIRDSPEPKTATETEKDRKIRLKVNADNERARQIIFDSVWQQRELDLQIV
YSIVHFFAALTAYNCFPGKYTNRQSLTAIIYVMVVTDETDVNRAEDARVF
SVHPVFRARRCVVGSSGTSSVSSNCCNLFIDELGRVYQNWEMYVTTNELP
AGVMVAPEKGIYRLVRDQVRLDKYTTPAGTTNRKVLGYLDTGSAVGGFFA
ACVPIAALLTLPVSAPLMGAAGVVGLASAGYAASRSGSKLFDRSQHEQSI
NVTDREARGHWLGVAGGTVGLAAAGATTVLTTATNAGREVGAITQLTVNS
MNISSIVVSGTGVANGVLDLILKAKDGDEIVAMDVLQLSASLVLLTHSVY
NFKLASTIINETSNANIADYRKNLSNRQRRTFDKAAKETVRMQGNTRGKL
DIIRNVNEISPQEFNDLFKINKNLNQEGVRYSFAPDGKGFLLNGDVQTTG
AELRASVQHNQGGNVLGKVSQPIPGSHAGSGRLQLGGVNQVSRLIGPLPT
SHPRQEPSTYAAGVFALELSSVLVGGVVFVLEKYGKIIFEHVINAESFES
LINIMANKLDPKVFDHIMLLTRAFMDTMLEDLTSVLKFFISTESVLYRIL
LYILRNFEDVQLSVIADHTCEIVEAVRVYFMSLNPNAFPGLLQKCPKCIG
HFSVCPL*
BS31194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pst-PF | 707 | CG8588-PF | 1..707 | 1..707 | 3595 | 100 | Plus |
| pst-PG | 682 | CG8588-PG | 1..682 | 1..707 | 3426 | 96.5 | Plus |
| pst-PE | 682 | CG8588-PE | 1..682 | 1..707 | 3426 | 96.5 | Plus |
| CG7730-PC | 581 | CG7730-PC | 6..425 | 7..476 | 792 | 40.9 | Plus |
| CG32243-PA | 485 | CG32243-PA | 6..170 | 6..226 | 252 | 29.9 | Plus |
| CG7730-PC | 581 | CG7730-PC | 364..578 | 498..704 | 177 | 25 | Plus |
