BS31201.complete Sequence
1595 bp assembled on 2012-07-30
GenBank Submission: KX805601
> BS31201.complete
GAAGTTATCAGTCGACATGGGTCGCAGCAACTTCAGTTCGCATCACCAGC
AGACTCATGTGAGGCGCCACCGCAATGCTGGCGGTGCCACATCAAAATCA
CCAAACGCAGCCAAAACTTCGCCAACAATGACGGACTACCTGTCGCTGCA
CTCGCGACTCGCCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGG
AACTAACGAATGACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTG
AATCTGGACGAGATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAA
CGAGAATGGCATCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCA
AGCTAATCTCCATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGA
GACGAGGGTCTCCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTAT
GGCAGGCGGACAAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGT
ACGATGTGGGACTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAG
CGAATCCTGAAGCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGG
ACACATCACTTGGTACATCATGACGTCGGAGCACACGGTGCAACCCACAT
ACGACTACTTTGTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTA
CTGTTGTTCGAGCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCAT
CATTCTGGACGAAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAG
GAATCTATCGGGCTATGAAGCGCCAGGGGATTCTGGACGATATGCAGAAG
CGTGGTGTCTTATATCTGCATGCCCATAGCGTGGACAACATCCTGATCAA
GGTGGCCGATCCCGTTTTTATCGGCTACTGCGTGCAGGAGAAGGCCGACT
GCGCCGCTAAGGTGGTGGAGAAGGCAGCTCCCAACGAGGCTGTGGGCGTG
GTGGCCATTGTCGATGGCAAATACCAGGTGGTGGAGTACAGCGAAATCTC
GGCCAAAACAGCCGAGATGCGCAATTCAGACGGCAGGCTGACCTTCAGTG
CTGGCAACATTTGCAATCACTTCTTCAGCTCGAACTTCCTGCAGAAGATT
GGCAGCACATACGAGCAGGAGCTGAAGCTGCACGTGGCCAAGAAGAAGAT
TCCCTTCGTGGACAACGCCGGCAAGCGTCTAACGCCCGACAAGCCGAACG
GCATCAAGATAGAGAAGTTTGTCTTTGACGTCTTCGAGTTCGCCCAGAAG
TTCGTGGCCATGGAAGTGCCACGCGACGAAGAGTTCAGCGCGCTAAAGAA
CTCCGATGCAGCTGGCAAGGATTGCCCCAGTACTGCCCGCTCGGACCTCC
ATCGCCTGCACAAGAAGTATATCGAAGGCGCCGGTGGCATTGTGCATGGC
GAAGTCTGCGAGATCTCGCCCTTCGTCACCTACGCCGGCGAGAATCTCGC
CTCGCATGTGGAGGGCAAGTCGTTCACCAGTCCCGTCTACCTGCGGGACA
GCCGCGATCCCTTGCACGGACACCTTTAAAAGCTTTCTAGACCAT
BS31201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RA | 1563 | CG9535-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| mmy-RB | 1452 | CG9535-PB | 1..1452 | 128..1579 | 7260 | 100 | Plus |
| mmy-RD | 1452 | CG9535-PD | 1..1452 | 128..1579 | 7260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RA | 2030 | CG9535-RA | 214..1776 | 17..1579 | 7815 | 100 | Plus |
| mmy-RB | 1921 | CG9535-RB | 113..1614 | 78..1579 | 7510 | 100 | Plus |
| mmy-RD | 2064 | CG9535-RD | 256..1757 | 78..1579 | 7510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6468845..6469961 | 1579..463 | 5585 | 100 | Minus |
| 2L | 23513712 | 2L | 6471327..6471715 | 465..77 | 1945 | 100 | Minus |
| 2L | 23513712 | 2L | 6473631..6473691 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:01:48 has no hits.
BS31201.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:34 Download gff for
BS31201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 229..1789 | 17..1577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:36 Download gff for
BS31201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 214..1774 | 17..1577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:48 Download gff for
BS31201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 214..1774 | 17..1577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:48 Download gff for
BS31201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6468847..6469959 | 465..1577 | 100 | <- | Minus |
| 2L | 6471328..6471714 | 78..464 | 100 | <- | Minus |
| 2L | 6473631..6473691 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:36 Download gff for
BS31201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6468847..6469959 | 465..1577 | 100 | <- | Minus |
| arm_2L | 6471328..6471714 | 78..464 | 100 | <- | Minus |
| arm_2L | 6473631..6473691 | 17..77 | 100 | | Minus |
BS31201.pep Sequence
Translation from 16 to 1578
> BS31201.pep
MGRSNFSSHHQQTHVRRHRNAGGATSKSPNAAKTSPTMTDYLSLHSRLAQ
VGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYFDRATVSMNENGIK
LDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISNGHVAVLLMAGGQG
TRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELAQEANGKRGHITWY
IMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLPCFEYDGRIILDEK
HRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAHSVDNILIKVADPV
FIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQVVEYSEISAKTAE
MRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELKLHVAKKKIPFVDN
AGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRDEEFSALKNSDAAG
KDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFVTYAGENLASHVEG
KSFTSPVYLRDSRDPLHGHL*
BS31201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-PA | 520 | CG9535-PA | 1..520 | 1..520 | 2709 | 100 | Plus |
| mmy-PB | 483 | CG9535-PB | 1..483 | 38..520 | 2512 | 100 | Plus |
| mmy-PD | 483 | CG9535-PD | 1..483 | 38..520 | 2512 | 100 | Plus |
