BS31231.complete Sequence
2033 bp assembled on 2012-07-30
GenBank Submission: KX801047
> BS31231.complete
GAAGTTATCAGTCGACATGGAGGGCGCCAAATTAAGCGCAGTTCGGATTG
CGGTCCGCGAGGCGCCGTACCGCCAGTTCTTGGGGCGTCGGGAGCCCAGC
GTCGTCCAGTTTCCGCCATGGAGCGACGGAAAGTCGTTAATAGTGGATCA
GAATGAATTCCACTTCGATCACGCCTTTCCCGCGACCATCAGCCAGGATG
AGATGTACCAGGCGCTGATCTTGCCGCTGGTGGACAAGCTGCTCGAGGGA
TTCCAGTGCACTGCACTCGCCTACGGCCAGACGGGAACGGGCAAGAGCTA
CTCAATGGGCATGACACCTCCGGGAGAGATACTGCCCGAGCACCTGGGTA
TTCTGCCTCGCGCCCTGGGCGACATTTTTGAGCGCGTGACCGCCCGGCAG
GAGAACAACAAGGATGCGATTCAGGTGTACGCCTCCTTCATAGAGATCTA
CAATGAGAAACCCTTCGATCTGCTGGGCTCCACGCCACATATGCCCATGG
TGGCGGCGCGTTGCCAGCGATGCACCTGCCTTCCTTTGCACAGCCAGGCG
GATCTGCATCACATCTTGGAGCTAGGCACTCGCAATCGACGCGTTCGTCC
CACCAATATGAATTCCAATAGTTCGCGATCCCATGCCATAGTCACCATTC
ACGTGAAGAGTAAAACCCATCACTCGCGGATGAATATTGTGGATCTGGCC
GGTTCAGAAGGCGTGCGGCGAACTGGGCACGAGGGCGTGGCCAGGCAGGA
GGGCGTCAACATCAATCTGGGCCTGTTGAGCATCAACAAGGTGGTGATGT
CCATGGCGGCGGGCCACACAGTGATACCATACCGCGACAGCGTCCTTACC
ACAGTTCTGCAGGCCTCGCTAACCGCGCAGTCGTATCTGACCTTTCTGGC
CTGCATCAGTCCGCATCAATGCGATCTCAGCGAGACGTTGTCCACCCTGC
GTTTTGGCACCAGTGCCAAGAAGCTTCGGCTGAATCCGATGCAAGTGGCG
CGCCAGAAGCAATCGCTGGCCGCACGGACAACACACGTCTTCCGCCAAGC
GCTATGCACCTCGACGGCCATCAAGTCAAACGCAGCCAATCATAATAGCA
TAGTGGTTCCAAAATCCAAATATAGCACAACCAAGCCGCTGAGCGCCGTG
CTCCATCGAACTCGCTCCGAACTTGGCATGACGCCCAAAGCTAAGAAAAG
GGCTCGCGAGCTATTGGAGCTGGAGGAGACCACGCTGGAGCTCTCGTCTA
TACACATTCAGGACAGCAGTCTGAGTCTGTTGGGTTTCCATAGCGATAGC
GATAAGGATAGGCATTTAATGCCTCCCCCAACAGGGCAAGAGCCAAGGCA
AGCCAGCAGCCAGAACTCTACGCTAATGGGCATTGTCGAAGAGACCGAGC
CCAAGGAATCGTCAAAGGTGCAACAGTCAATGGTTGCCCCCACGGTGCCC
ACAACTGTACGCTGCCAGCTGTTCAACACCACCATCAGTCCCATCAGTCT
ACGGGCATCCAGCTCTCAGCGAGAACTTAGCGGCATCCAGCCAATGGAGG
AGACAGTAGTGGCTTCGCCACAGCAGCCATGCCTTCGTCGTTCCGTGCGT
CTAGCGAGTAGCATGCGTTCGCAGAACTATGGAGCCATTCCCAAGGTTAT
GAATTTGCGGCGCAGCACGCGGCTGGCGGGAATCCGGGAACATGCCACCT
CCGTTGTTGTGAAAAACGAGACGGATGCGATACCGCACCTTCGAAGTACA
GTGCAAAAAAAACGTACGCGAAACGTGAAACCTGCGCCCAAGGCCTGGAT
GGCCAATAATACAAAATGTTTTCTGGACCTGCTTAACAATGGAAACGTTA
AGCAATTGCAGGAGATTCCAGGGATCGGTCCAAAGTCCGCCTTTAGTTTG
GCCTTGCACAGATCCCGCCTGGGTTGCTTCGAGAATCTTTTTCAAGTCAA
ATCCCTGCCCATTTGGTCGGGAAATAAATGGGAACGATTTTGTCAAATTA
ACTGTCTCGACACTTGAAAGCTTTCTAGACCAT
BS31231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nod-RB | 2001 | CG1763-PB | 1..2001 | 17..2017 | 10005 | 100 | Plus |
| nod-RA | 2001 | CG1763-PA | 1..2001 | 17..2017 | 10005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nod-RB | 2279 | CG1763-RB | 152..2153 | 16..2017 | 10010 | 100 | Plus |
| nod-RA | 2449 | CG1763-RA | 152..2153 | 16..2017 | 10010 | 100 | Plus |
| CG1561-RB | 2160 | CG1561-RB | 1933..2079 | 1009..863 | 735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11584558..11585270 | 1199..1911 | 3565 | 100 | Plus |
| X | 23542271 | X | 11581368..11581904 | 327..863 | 2685 | 100 | Plus |
| X | 23542271 | X | 11596702..11597108 | 1493..1911 | 1505 | 91.2 | Plus |
| X | 23542271 | X | 11586237..11586643 | 1493..1911 | 1490 | 90.9 | Plus |
| X | 23542271 | X | 11588330..11588736 | 1493..1911 | 1490 | 90.9 | Plus |
| X | 23542271 | X | 11590423..11590829 | 1493..1911 | 1490 | 90.9 | Plus |
| X | 23542271 | X | 11592516..11592922 | 1493..1911 | 1490 | 90.9 | Plus |
| X | 23542271 | X | 11594609..11595015 | 1493..1911 | 1490 | 90.9 | Plus |
| X | 23542271 | X | 11598795..11599201 | 1493..1911 | 1490 | 90.9 | Plus |
| 3R | 32079331 | 3R | 12473306..12473633 | 1493..1826 | 1215 | 91.6 | Plus |
| 3R | 32079331 | 3R | 12474898..12475225 | 1493..1826 | 1215 | 91.6 | Plus |
| 3R | 32079331 | 3R | 12476490..12476817 | 1493..1826 | 1215 | 91.6 | Plus |
| 3R | 32079331 | 3R | 12469329..12469656 | 1493..1826 | 1200 | 91.3 | Plus |
| 3R | 32079331 | 3R | 12479437..12479764 | 1493..1826 | 1200 | 91.3 | Plus |
| 3R | 32079331 | 3R | 12487402..12487729 | 1493..1826 | 1200 | 91.3 | Plus |
| 3R | 32079331 | 3R | 12482266..12482593 | 1493..1826 | 1170 | 90.7 | Plus |
| 3R | 32079331 | 3R | 12490231..12490558 | 1493..1826 | 1170 | 90.7 | Plus |
| 3R | 32079331 | 3R | 12485807..12486117 | 1510..1826 | 1145 | 91.5 | Plus |
| X | 23542271 | X | 11581103..11581299 | 132..328 | 985 | 100 | Plus |
| X | 23542271 | X | 11584304..11584497 | 1008..1201 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 12497222..12497452 | 1493..1723 | 930 | 93.5 | Plus |
| 3R | 32079331 | 3R | 12499296..12499526 | 1493..1723 | 930 | 93.5 | Plus |
| X | 23542271 | X | 11582038..11582184 | 863..1009 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 12472180..12472379 | 1621..1826 | 665 | 89.3 | Plus |
| X | 23542271 | X | 11580923..11581040 | 16..133 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 12480958..12481093 | 1493..1628 | 590 | 95.6 | Plus |
| 3R | 32079331 | 3R | 12488923..12489058 | 1493..1628 | 590 | 95.6 | Plus |
| 3R | 32079331 | 3R | 12470938..12471072 | 1493..1627 | 585 | 95.6 | Plus |
| X | 23542271 | X | 11585346..11585454 | 1909..2017 | 545 | 100 | Plus |
| X | 23542271 | X | 11586707..11586815 | 1909..2017 | 440 | 93.6 | Plus |
| X | 23542271 | X | 11588800..11588908 | 1909..2017 | 440 | 93.6 | Plus |
| X | 23542271 | X | 11590893..11591001 | 1909..2017 | 440 | 93.6 | Plus |
| X | 23542271 | X | 11592986..11593094 | 1909..2017 | 440 | 93.6 | Plus |
| X | 23542271 | X | 11595079..11595187 | 1909..2017 | 440 | 93.6 | Plus |
| X | 23542271 | X | 11597172..11597280 | 1909..2017 | 440 | 93.6 | Plus |
| X | 23542271 | X | 11599265..11599373 | 1909..2017 | 440 | 93.6 | Plus |
| 3R | 32079331 | 3R | 12500878..12500946 | 1493..1561 | 285 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:08:46 has no hits.
BS31231.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:45 Download gff for
BS31231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nod-RA | 107..2106 | 17..2016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:49 Download gff for
BS31231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nod-RA | 153..2152 | 17..2016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:07 Download gff for
BS31231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nod-RA | 153..2152 | 17..2016 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:07 Download gff for
BS31231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11580924..11581040 | 17..133 | 100 | -> | Plus |
| X | 11581105..11581299 | 134..328 | 100 | -> | Plus |
| X | 11581370..11581904 | 329..863 | 100 | -> | Plus |
| X | 11582039..11582184 | 864..1009 | 100 | -> | Plus |
| X | 11584306..11584496 | 1010..1200 | 100 | -> | Plus |
| X | 11584560..11585270 | 1201..1911 | 100 | -> | Plus |
| X | 11585349..11585453 | 1912..2016 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:49 Download gff for
BS31231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11475138..11475332 | 134..328 | 100 | -> | Plus |
| arm_X | 11474957..11475073 | 17..133 | 100 | -> | Plus |
| arm_X | 11478339..11478529 | 1010..1200 | 100 | -> | Plus |
| arm_X | 11475403..11475937 | 329..863 | 100 | -> | Plus |
| arm_X | 11476072..11476217 | 864..1009 | 100 | -> | Plus |
| arm_X | 11478593..11479303 | 1201..1911 | 100 | -> | Plus |
| arm_X | 11479382..11479486 | 1912..2016 | 100 | | Plus |
BS31231.pep Sequence
Translation from 16 to 2016
> BS31231.pep
MEGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHF
DHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMT
PPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPF
DLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNS
NSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNIN
LGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPH
QCDLSETLSTLRFGTSAKKLRLNPMQVARQKQSLAARTTHVFRQALCTST
AIKSNAANHNSIVVPKSKYSTTKPLSAVLHRTRSELGMTPKAKKRARELL
ELEETTLELSSIHIQDSSLSLLGFHSDSDKDRHLMPPPTGQEPRQASSQN
STLMGIVEETEPKESSKVQQSMVAPTVPTTVRCQLFNTTISPISLRASSS
QRELSGIQPMEETVVASPQQPCLRRSVRLASSMRSQNYGAIPKVMNLRRS
TRLAGIREHATSVVVKNETDAIPHLRSTVQKKRTRNVKPAPKAWMANNTK
CFLDLLNNGNVKQLQEIPGIGPKSAFSLALHRSRLGCFENLFQVKSLPIW
SGNKWERFCQINCLDT*
BS31231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nod-PB | 666 | CG1763-PB | 1..666 | 1..666 | 3417 | 100 | Plus |
| nod-PA | 666 | CG1763-PA | 1..666 | 1..666 | 3417 | 100 | Plus |
| Klp64D-PA | 677 | CG10642-PA | 68..368 | 48..337 | 450 | 37.8 | Plus |
| Klp3A-PB | 1212 | CG8590-PB | 7..340 | 7..325 | 442 | 35.9 | Plus |
| Klp3A-PA | 1212 | CG8590-PA | 7..340 | 7..325 | 442 | 35.9 | Plus |
