BS31237.complete Sequence
1763 bp assembled on 2012-07-30
GenBank Submission: KX803842
> BS31237.complete
GAAGTTATCAGTCGACATGTCGCTTTTTGTGGAATATACGGAGCCGAAGT
GGCGCCACCTGGATATGCGCGCGCTATCCGTTGACGAGTTTTACCTGTAC
CTGCGCTCGGAGTTCAGCAGCCAGACCCATCTGTACTCACTGTCCGACGA
ATGCTACACGTGTCCGTATACCAAAGTGAAAGCTCTGCCCGCTGCCGACG
TCGCTGCCGTCGTCGTTGAACCGTTACGTTTGAGTTCGGCATATTCGCTG
AATTTCAAAATATTCGACCTCGATCAGGGTCACTATGCCTACGACAATGT
CTCGTCGCTCTGCTGGCTGCGTCGCAGCGATCTGCAGGAATTCGGTGTCT
ACAACTTGACCCTGCAAGCGAATGGCACCTGTGCCTTTGCCGTGGACAAG
CCGGGCGTACCAATTAATTACGCTTTCATCGCCGTTTTCGTTCTGGTTGC
CGCCCTGCTAATCGCCCTGAAGCTAGTGAGCTGCGCCTGGCGTTATTATC
GCTATGACGAGGCCACCGCCGCTGCCGACAGCATCGGCGAAGCCGCCACC
AAGGCGACGCAGAGGAAGCGCCTCCGCAGCCTGGACACCTTTCGCGGAAT
TTCGATTGTTCTGATGATCTTCGTGAACAGCGGCGGCGGCGGTTACGCCT
GGATCGAGCATGCAGCCTGGAACGGACTACACTTGGCCGATGTCGTCTTC
CCCTCGTTCCTCTGGATCATGGGCGTGTGCATACCGCTCTCCGTCAAATC
GCAATTGTCGCGAGGCAGCAGTAAGGCGAGGATTTGCCTGCGCATACTGT
GGCGATCGATAAAGCTGTTCGTCATCGGCCTGTGCCTCAACTCGATGAGC
GGGCCGAATCTGGAGCAGCTGCGCATCATGGGTGTGCTGCAGCGATTCGG
AGTGGCATACCTGGTGGTTGCGATTCTTCATACTTTGTGCTGTCGCAGGG
AGCCTATCAGTCCTCAAAGATCCTGGCAGCGCGCCGTTCACGATGTGTGC
CTGTTCAGCGGAGAGTTGGCTGTGCTGCTGGCCCTGGTGGCCACCTATTT
GGGCCTGACCTTCGGCCTACGCGTGCCTGGCTGTCCGCGCGGCTATTTGG
GCCCTGGCGGCAAACACGACTACAATGCCCATCCCAAGTGCATTGGTGGC
GCAGCGGGCTATGCGGACCTTCAGGTGCTGGGCAATGCGCATATCTACCA
GCATCCGACTGCCAAGTATGTTTACGATTCCACAGCCTTCGATCCAGAGG
GTATATTCGGCTGCATTCTAAGCGTTGTGCAAGTGCTGCTCGGCGCCTTT
GCCGGCGTAACACTGCTTGTGCATCCCAACTTTCAGTCAAGGATCCGTCG
CTGGACACTACTCGCCATTCTTCTGGGCCTCATTGGCGGTGCTCTGTGCG
GATTCTCTCGTGAGGGCGGCGCCATACCCATGAACAAGAACCTTTGGTCG
CTGTCCTTCGTGTGCGTCACCGTCAGCTTGGCCCTGTTGATTCTCTCACT
GATGTACTACTTCATCGACGTGCGGGAGACGTGGAGCTGGTCGGGCTATC
CCTTCACCGAATGCGGCATGAACGCCATCGTGATGTACGTGGGCCACTCA
GTGCTGCACAAGATGCTGCCCTGGCACTGGCGGATCGGCGAGATGAACAC
GCACTTCATGCTCCTGCTGGAGGCCACGTGGAACACGCTGGTCTGGGTGG
GCATCGCGCTGTATCTGGACGCGCAGGAATTCTACTACAGCGTGTAGAAG
CTTTCTAGACCAT
BS31237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6903-RB | 1731 | CG6903-PB | 1..1731 | 17..1747 | 8655 | 100 | Plus |
| CG6903-RA | 1731 | CG6903-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6903-RB | 2135 | CG6903-RB | 326..2056 | 17..1747 | 8655 | 100 | Plus |
| CG6903-RA | 2313 | CG6903-RA | 468..2198 | 17..1747 | 8655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4920329..4920992 | 597..1260 | 3320 | 100 | Plus |
| X | 23542271 | X | 4921045..4921533 | 1259..1747 | 2445 | 100 | Plus |
| X | 23542271 | X | 4920094..4920269 | 422..597 | 880 | 100 | Plus |
| X | 23542271 | X | 4919197..4919340 | 17..160 | 720 | 100 | Plus |
| X | 23542271 | X | 4919453..4919593 | 160..300 | 705 | 100 | Plus |
| X | 23542271 | X | 4919899..4920020 | 301..422 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:12:01 has no hits.
BS31237.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:54 Download gff for
BS31237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6903-RA | 468..2198 | 17..1747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:44 Download gff for
BS31237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6903-RA | 468..2198 | 17..1747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:23 Download gff for
BS31237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6903-RA | 468..2198 | 17..1747 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:23 Download gff for
BS31237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4919197..4919340 | 17..160 | 100 | -> | Plus |
| X | 4919454..4919593 | 161..300 | 100 | -> | Plus |
| X | 4919899..4920020 | 301..422 | 100 | -> | Plus |
| X | 4920095..4920269 | 423..597 | 100 | -> | Plus |
| X | 4920330..4920991 | 598..1259 | 100 | -> | Plus |
| X | 4921046..4921533 | 1260..1747 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:44 Download gff for
BS31237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4813230..4813373 | 17..160 | 100 | -> | Plus |
| arm_X | 4813487..4813626 | 161..300 | 100 | -> | Plus |
| arm_X | 4813932..4814053 | 301..422 | 100 | -> | Plus |
| arm_X | 4814128..4814302 | 423..597 | 100 | -> | Plus |
| arm_X | 4814363..4815024 | 598..1259 | 100 | -> | Plus |
| arm_X | 4815079..4815566 | 1260..1747 | 100 | | Plus |
BS31237.pep Sequence
Translation from 16 to 1746
> BS31237.pep
MSLFVEYTEPKWRHLDMRALSVDEFYLYLRSEFSSQTHLYSLSDECYTCP
YTKVKALPAADVAAVVVEPLRLSSAYSLNFKIFDLDQGHYAYDNVSSLCW
LRRSDLQEFGVYNLTLQANGTCAFAVDKPGVPINYAFIAVFVLVAALLIA
LKLVSCAWRYYRYDEATAAADSIGEAATKATQRKRLRSLDTFRGISIVLM
IFVNSGGGGYAWIEHAAWNGLHLADVVFPSFLWIMGVCIPLSVKSQLSRG
SSKARICLRILWRSIKLFVIGLCLNSMSGPNLEQLRIMGVLQRFGVAYLV
VAILHTLCCRREPISPQRSWQRAVHDVCLFSGELAVLLALVATYLGLTFG
LRVPGCPRGYLGPGGKHDYNAHPKCIGGAAGYADLQVLGNAHIYQHPTAK
YVYDSTAFDPEGIFGCILSVVQVLLGAFAGVTLLVHPNFQSRIRRWTLLA
ILLGLIGGALCGFSREGGAIPMNKNLWSLSFVCVTVSLALLILSLMYYFI
DVRETWSWSGYPFTECGMNAIVMYVGHSVLHKMLPWHWRIGEMNTHFMLL
LEATWNTLVWVGIALYLDAQEFYYSV*
BS31237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6903-PB | 576 | CG6903-PB | 1..576 | 1..576 | 3051 | 100 | Plus |
| CG6903-PA | 576 | CG6903-PA | 1..576 | 1..576 | 3051 | 100 | Plus |
