BS31248.complete Sequence
3413 bp assembled on 2012-07-30
GenBank Submission: KX802013
> BS31248.complete
GAAGTTATCAGTCGACATGGCACGCCCAATTTTTCCGAACCAGCAGAAGA
TAGCTGAGAAACTAATCATCTTGAATGACCGCGGCCTGGGCATTCTTACG
CGGATATACAACATCAAGAAAGCATGCGGCGACACCAAGTCGAAGCCAGG
CTTCCTCTCCGAGAAGTCGTTGGAATCGAGCATCAAGTTTATCGTGAAGC
GGTTCCCCAACATCGACGTCAAAGGGCTCAATGCTATTGTAAACATCAAA
GCGGAGATTATTAAGTCGCTGTCCCTGTATTACCACACATTCGTGGACCT
ACTTGATTTCAAGGACAATGTATGCGAACTGCTCACCACGATGGACGCCT
GCCAGATTCACCTGGACATCACATTGAACTTCGAGCTGACCAAATATTAT
CTGGACTTGGTTGTGACCTACGTGTCCTTGATGATTGTTTTGTCTAGGGT
CGAGGACCGCAAGGCAGTTCTGGGCTTGTACAATGCCGCCTACGAGCTGC
AAAACAATCAGGCGGACACGGGCTTCCCCCGCTTGGGGCAGATGATTCTG
GACTACGAGGTCCCCTTAAAAAAGTTGGCCGAGGAATTCATTCCCCACCA
GCGCCTGCTAACCAGTGCGTTGCGGTCGCTGACCTCCATCTATGCACTGC
GAAACCTGCCAGCAGACAAGTGGAGGGAAATGCAAAAGTTGAGTCTGGTA
GGCAATCCGGCCATTCTTCTTAAGGCCGTCCGCACTGACACCATGTCCTG
CGAGTACATATCCCTGGAGGCAATGGACCGCTGGATAATCTTTGGCTTGC
TGCTGAACCATCAAATGCTCGGACAGTACCCGGAAGTCAACAAAATCTGG
CTCTCCGCCCTGGAGTCAAGCTGGGTTGTGGCCTTGTTCCGCGACGAGGT
CCTGCAAATTCATCAATACATTCAGGCTACTTTCGACGGAATTAAAGGTT
ACAGCAAGCGGATCGGAGAAGTAAAGGAAGCCTACAACACGGCGGTTCAA
AAAGCTGCTTTAATGCATCGGGAGCGGCGCAAGTTTCTTCGAACAGCCTT
GAAGGAGCTAGCTCTTATTATGACCGACCAACCAGGCCTCCTGGGACCTA
AGGCAATATTCATTTTCATCGGTCTTTGTCTTGCGCGCGATGAGATTCTA
TGGCTCCTCAGGCATAATGACAACCCACCTCTTCTCAAAAATAAAGGAAA
GAGCAATGAAGATCTTGTAGACCGACAGCTGCCGGAGCTCTTATTCCACA
TGGAGGAACTCCGCGCTCTTGTGCGTAAATACAGCCAGGTAATGCAGCGA
TATTACGTGCAATACTTGTCCGGATTCGATGCCACGGATCTTAATATTCG
AATGCAAAGTCTGCAAATGTGTCCAGAAGACGAAAGCATAATCTTCAGTT
CGCTCTACAACACGGCTGCAGCCCTGACAGTTAAGCAGGTGGAAGACAAC
GAACTCTTTTATTTCCGACCATTCCGCCTGGACTGGTTCCGCCTCCAAAC
GTACATGAGTGTGGGAAAGGCTGCACTTAGGATCGCAGAGCATGCAGAGC
TGGCCCGCCTACTGGATTCAATGGTTTTCCACACTAGGGTGGTAGATAAC
TTGGACGAAATACTAGTAGAAACCTCGGATCTCAGTATCTTCTGTTTCTA
TAACAAAATGTTTGACGACCAATTCCACATGTGCTTGGAGTTTCCCGCGC
AGAACCGCTACATCATAGCGTTTCCCTTAATCTGCAGCCACTTCCAAAAT
TGTACGCACGAAATGTGCCCGGAGGAGCGACACCATATACGTGAAAGGTC
TCTCAGCGTGGTAAATATATTTCTTGAGGAAATGGCTAAGGAGGCTAAAA
ACATTATAACCACAATTTGCGATGAGCAGTGCACAATGGCAGACGCTCTA
TTGCCAAAACACTGTGCTAAGATTCTTTCCGTACAATCTGCTCGTAAGAA
GAAGGACAAATCGAAGTCTAAGCATTTTGACGACATACGAAAGCCGGGAG
ACGAGTCGTACCGAAAGACACGAGAGGATCTGACGACGATGGACAAGTTG
CACATGGCCCTGACGGAGCTTTGTTTTGCAATCAATTATTGCCCCACGGT
CAACGTTTGGGAGTTTGCTTTTGCCCCTCGCGAGTATCTCTGTCAGAACC
TGGAACACCGCTTTTCCCGGGATCTTGTTGGCATGGTGATGTTCAACCAG
GAGACAATGGAGATAGCCAAGCCCTCGGAGCTGCTGGCCAGCGTTCGAGC
CTACATGAACGTGCTGCAGACAGTAGAGAACTACGTGCACATAGACATAA
CACGAGTTTTCAACAACTGCCTGTTGCAGCAAACACAGGCTTTAGACTCT
CATGGCGAGAAAACCATTGCCGCTTTGTACAACACCTGGTACAGTGAGGT
TCTGCTAAGGCGTGTCTCCGCTGGCAACATTGTGTTCTCCATTAACCAAA
AGGCTTTTGTTCCCATTTCGCCCGAGGGCTGGGTACCATTTAACCCGCAG
GAATTCTCTGATCTCAACGAGCTGCGAGCACTTGCAGAACTTGTGGGACC
TTACGGTATCAAAACATTGAACGAAACACTTATGTGGCACATAGCAAACC
AGGTGCAAGAGTTGAAGTCGCTGGTGAGCACCAACAAGGAAGTGCTCATT
ACACTGCGAACCAGTTTTGACAAACCTGAAGTGATGAAGGAGCAATTTAA
GCGCTTACAGGACGTGGACCGCGTGCTGCAACGCATGACGATCATTGGTG
TGATCATATGTTTCCGCAACCTGGTGCATGAAGCCCTCGTTGATGTGCTG
GACAAGCGCATACCCTTCCTGCTTAGCTCAGTGAAGGACTTTCAGGAACA
TTTGCCCGGAGGCGACCAAATTAGGGTTGCTTCCGAGATGGCCTCAGCAG
CGGGTCTGCTATGCAAGGTAGACCCCACATTAGCAACTACACTGAAATCA
AAAAAGCCAGAATTCGATGAGGGTGAGCACCTCACTGCCTGTCTACTGAT
GGTCTTTGTGGCAGTGTCTATACCAAAACTGGCCCGTAACGAAAATTCCT
TCTACAGAGCCACAATTGATGGCCACTCAAATAACACGCACTGCATGGCG
GCGGCCATTAATAACATCTTCGGAGCCCTGTTTACCATCTGCGGTCAAAG
TGACATGGAGGACCGCATGAAAGAGTTCCTTGCTCTGGCCAGTTCTTCCC
TACTGCGCTTGGGCCAGGAGTCCGACAAAGAGGCGACACGGAACCGAGAG
TCCATCTATTTGCTGCTGGACGAAATCGTCAAACAATCGCCCTTCCTCAC
AATGGATCTGCTTGAGTCCTGCTTTCCCTACGTGCTTATACGCAACGCGT
ACCATGGCGTATACAAGCAGGAACAGATCTTAGGGCTGGCACTCTAAAAG
CTTTCTAGACCAT
BS31248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hem-RA | 3381 | CG5837-PA | 1..3381 | 17..3397 | 16905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hem-RA | 3777 | CG5837-RA | 209..3590 | 17..3398 | 16910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22284541..22286744 | 3398..1195 | 11020 | 100 | Minus |
| 3L | 28110227 | 3L | 22286807..22287987 | 1197..17 | 5905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:08:55 has no hits.
BS31248.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:46 Download gff for
BS31248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hem-RA | 213..3591 | 17..3395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:54 Download gff for
BS31248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hem-RA | 209..3587 | 17..3395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:10 Download gff for
BS31248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hem-RA | 209..3587 | 17..3395 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:10 Download gff for
BS31248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22284544..22286742 | 1197..3395 | 100 | <- | Minus |
| 3L | 22286808..22287987 | 17..1196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:54 Download gff for
BS31248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22277644..22279842 | 1197..3395 | 100 | <- | Minus |
| arm_3L | 22279908..22281087 | 17..1196 | 100 | | Minus |
BS31248.pep Sequence
Translation from 16 to 3396
> BS31248.pep
MARPIFPNQQKIAEKLIILNDRGLGILTRIYNIKKACGDTKSKPGFLSEK
SLESSIKFIVKRFPNIDVKGLNAIVNIKAEIIKSLSLYYHTFVDLLDFKD
NVCELLTTMDACQIHLDITLNFELTKYYLDLVVTYVSLMIVLSRVEDRKA
VLGLYNAAYELQNNQADTGFPRLGQMILDYEVPLKKLAEEFIPHQRLLTS
ALRSLTSIYALRNLPADKWREMQKLSLVGNPAILLKAVRTDTMSCEYISL
EAMDRWIIFGLLLNHQMLGQYPEVNKIWLSALESSWVVALFRDEVLQIHQ
YIQATFDGIKGYSKRIGEVKEAYNTAVQKAALMHRERRKFLRTALKELAL
IMTDQPGLLGPKAIFIFIGLCLARDEILWLLRHNDNPPLLKNKGKSNEDL
VDRQLPELLFHMEELRALVRKYSQVMQRYYVQYLSGFDATDLNIRMQSLQ
MCPEDESIIFSSLYNTAAALTVKQVEDNELFYFRPFRLDWFRLQTYMSVG
KAALRIAEHAELARLLDSMVFHTRVVDNLDEILVETSDLSIFCFYNKMFD
DQFHMCLEFPAQNRYIIAFPLICSHFQNCTHEMCPEERHHIRERSLSVVN
IFLEEMAKEAKNIITTICDEQCTMADALLPKHCAKILSVQSARKKKDKSK
SKHFDDIRKPGDESYRKTREDLTTMDKLHMALTELCFAINYCPTVNVWEF
AFAPREYLCQNLEHRFSRDLVGMVMFNQETMEIAKPSELLASVRAYMNVL
QTVENYVHIDITRVFNNCLLQQTQALDSHGEKTIAALYNTWYSEVLLRRV
SAGNIVFSINQKAFVPISPEGWVPFNPQEFSDLNELRALAELVGPYGIKT
LNETLMWHIANQVQELKSLVSTNKEVLITLRTSFDKPEVMKEQFKRLQDV
DRVLQRMTIIGVIICFRNLVHEALVDVLDKRIPFLLSSVKDFQEHLPGGD
QIRVASEMASAAGLLCKVDPTLATTLKSKKPEFDEGEHLTACLLMVFVAV
SIPKLARNENSFYRATIDGHSNNTHCMAAAINNIFGALFTICGQSDMEDR
MKEFLALASSSLLRLGQESDKEATRNRESIYLLLDEIVKQSPFLTMDLLE
SCFPYVLIRNAYHGVYKQEQILGLAL*
BS31248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hem-PA | 1126 | CG5837-PA | 1..1126 | 1..1126 | 5791 | 100 | Plus |
