BS31303.complete Sequence
4283 bp assembled on 2012-11-15
GenBank Submission: KX804412
> BS31303.complete
GAAGTTATCAGTCGACATGCGCGTTCTCAACACGGAGCTGCGCCTGCGCT
TCAAAAATCGCAAACCGCGACCCTTTAATCGCGCTGCCAGTGCCGATGAT
GCGATGGATTTGGGATCGGGAGTGGGAGTGGGCACTGGCATCGCGAATGG
AGCCGGTATCGGTGTGGGGGCCACGATAATGCCCCTCGATCAGCTGAATG
GAGCCACCAGTATGAACGGCAGCATCAGTTCTCCATCCACGCCCGGCACC
TGTTCCAGTGGCATCGGAGTGGGCGGTGGCGGCTGCAGCAGCAGCAGCAA
CAATAGCATCAACAGCGGCAGCTACTCCACCGCCTGCACTCCGCCACCAC
CCACGCATCAGCATCACTCGCAGCACCAGCAGCTGCAGGGCACGCCGGGA
GGATCTAGTCGGGTAGGGGGAGCAGGAGCAGGCGGAGGTGGTGGTGTACC
ACCGGCACCACCCAGTGCCGGATCCTCGGGCCACAAGAACAGTCTCAAGG
GCACCAAGCTAGCGCGCCGGGCGCGTTCCTTTAAGGACGACCTCATCGAG
AAGATTTCCCTGATGCGAACCACCAACAATACACTGGGTCGCTCCCACTC
GCCGCACAGTCCGCGCACCAAGCACGGCACAAAGGCACCGCCCACCACCG
AGGAGGTGCTACGGTCCACCCAAACCCTGGAGACGCACGTCAAGGACATT
TCGAATGCCCTGAAGCACTTCCGGGATGTTATACTCAAGAAGAAGCTGGA
GGTGTTGCCGGGCAACGGAACGGTCATTCTGGAAACCATAGCCAGCATGT
ACTCCGTGATCCAAACCTATACCCTGAATGAAAACAGTGCCATCATGAGC
AGCGCCACGCTGCAGGTTTACCAGAGCCTGGGCAAGCTCATCAAGCTCTG
CGACGAGGTGATGCTCTCCGAGGACAGCGGCGAGTGCGCCTCCCTGAGCA
ACGAGAATGTGCGGGAAGTCATTGATCTTCTCGAGGATGCTGTGCGGAAT
CTCGTTACGCTGGCGCAGGGCAAGCTGAAGGAGCAGGATCAGTGCGCCTT
TCGCTACAGTGGATCTGGCTTGGGCGGCATTGGAGCGGCGGCGGAGATCA
TGGGTGCGGTCACCGCCTCGCCGGGAGCGAGTGTTCCCGGTACTGGAGTC
ATGCGCGTTTCGGCCGCCGAATCAGCTGCCCAGCGTACTTCGTTGCCGGA
CATAGCGCTCACGCCCAAGGAGCGCGACATACTGGAGCAGCACAATGTGA
ACCCGATGCGCGGCTCCCACAGCACCGAAAGTATCCTGCGCGACACGAGT
CCACCGCCGAAGCCACCGCTACCCAATAGGGCCAGTAATCCGCCGCCGTT
GCCACCAAAGCGACGCAGCCAGCCGAGCGCATCAGCTGGTACAGTGGGCG
TAGGCTGCTCATCGTCGACATCCACCTCCAATCAGGCCAGTCCACTGCCC
TACGCCCAGTCCCATAATATTAGTCTGAACTCGGACCTGGACTGCAGTTC
CAATATCTCGCTGCTGAATTATGGCGTGGATCGCCTATCCGTGCGTTCAC
GGTCACCGGATGAGAATAGTCAGTGCTCCTTTGACTCGGCGTTGAATCAC
TCACGCGAGGAGGAGGACCAGCAACAGCAACATCAGCATCTGAGGTCATT
TCCAAAGTTGGCTGCGATGATGGACGAAGACATGGACAAGATGGTCAGCT
ACAGTTTCGTGTCGATGCGTGAGTTTCGCACTTCCACACAGACGACGGAC
TACAGTGTCCAGTCCTCCACGAAGTCGTCCAGCAGCAATTCGGAGATTGC
GTTCAGCATCAGTGAGTCGACGGCGGTCGGCAGCAGTAGCGAGTACCAGC
AGATTAGCCAGTTGGTGTCGCACAGCCAGCGTCATATATCCTCGAGCAGT
AGCAGCTGCACCACCACGACCACCAGCAGCAGCACAACCACCGGCTATGG
CAGCAGCGAAGTGGAGCAGCTGCAGCAGCAGCAGCAGCAGCAGACGACGA
CGACGCCGGCCGATCTGGCGCCCGCCTTGCCGCCAAAGAGCATCCAACGG
AGCAGCCTAACCCGCCACGACTCGCCCGGAGTTGGCGATGAGCTGGACGA
GGTGCAGTCCTCCTCCGGCTGGGCCAGCCATCGGAGCAGCCAGTCGGAGG
TGGCCGAGCTGCGTCAGCTGTCGCCGCTCCATCACCTCAATCACCATCCG
CATACTGCGTCCGCCGGTCAACTGCAGCAGTGGCACTCCAAGCACCACAG
CCTGATCGAGGGACCCCGCCTCCAGCTGGCGGGGAGTGGCAGCTGCAGTG
CGTTCGATCAGCGACACTTGGATCAGGAGCCACCGCCGCTGCCAATAAAA
AAGAAGCACATTCTGGCGTACATGGAAATCTGTTCGGCGTCCACGCGATC
CATTGAGCAGCATCGTCACACAATGCACGCCTGCAACATAAGTCGCAACA
TCTCGCACAGCCAGACCATGAACATTATGCCCATGAGCAAGGAACTGTCG
CCGGAGCTCGAGATGCCACCTGCCCTGCCGCCAAAGAACTACAAGCAGCG
CAAGGCGACAAGCATGGTAGCATCACCCACGCTGCAGCCCGTCATTGTGA
CCACGCCACCGCCGAGTCCGAAGCCGACGCTGGGCGAGAATGGGTCGACG
GGCAGGCCGGACAGCCGGATGGCCACCGTATGCGAGGAGCTGAACGATGC
AGTGGCCAGCGAGGATGCGATGCCGGAGCCCCGTTCGCCCGTGCTGGACA
GCAATGAGAATGTGAGCGCCGTCGATGATGGACAGACTTTCTACTGTCAC
TCACATCAGTTGCCCGCCGCCGAAATGGAGATGAGCGAGGATGCGAGCAG
TGCCGACAACCAGCCAATAACCACGCCCCAAGTGCTCGAGGAGCAGGAGG
AGCCAACGGCGGAGTCCCGACCACTGGTCGCTGTGCACGAGTCGGTTAAG
CCAGCGAACGTCGACGAGGATGAGGAGGCGGAGCGAGCGGATATGCTGAT
CAACATGCTGGAAGAGGTCAACATCACACGGTACCTGATACTCAAGAAGA
GAGAGGAGGACGGGCCCGAGGTGAAGGGCGGCTACATCGATGCCCTCATC
GTGCACGCCAGCCGTGTCCAAAAGGTCGCCGACAATGCATTCTGCGAGGC
CTTCATCACCACCTTTCGCACCTTCATCCAGCCGATCGACGTGATCGAGA
AGCTGACCCATCGCTACACATACTTCTTCTGTCAAGTGCAGGACAACAAG
CAGAAGGCCGCTAAGGAGACCTTTGCGCTGCTGGTCCGAGTCGTCAACGA
TCTAACGTCGACGGATCTAACCAGCCAGCTGTTGAGCCTGCTGGTGGAGT
TCGTCTATCAGTTGGTTTGCTCTGGGCAATTGTACTTGGCCAAGTTGCTG
CGCAACAAGTTCGTGGAGAAGGTGACGCTGTACAAGGAGCCCAAGGTGTA
CGGCTTTGTTGGGGAGTTGGGCGGAGCCGGTAGTGTCGGCGGAGCAGGAA
TCGCCGGCAGTGGTGGATGCAGTGGTACAGCTGGTGGTGGAAACCAGCCT
AGTCTGCTCGACCTCAAGTCGCTGGAGATTGCCGAACAGATGACGCTGCT
GGATGCGGAGCTGTTCACGAAGATCGAGATACCCGAAGTATTACTATTTG
CCAAAGATCAGTGCGAGGAGAAGTCGCCCAACCTAAACAAGTTCACCGAG
CACTTCAACAAGATGTCCTACTGGGCGCGCTCCAAAATCCTGCGCCTGCA
GGATGCCAAGGAGCGGGAGAAGCATGTGAACAAGTTTATCAAAATCATGA
AGCATCTACGCAAGATGAACAACTACAACTCGTATCTGGCGTTGTTGTCG
GCCCTCGATTCGGGTCCCATAAGAAGATTGGAGTGGCAAAAAGGCATCAC
CGAGGAGGTGCGATCATTCTGCGCCCTCATCGATTCCAGCTCCAGTTTTC
GCGCCTATCGACAGGCGCTGGCCGAAACTAATCCGCCCTGCATACCCTAC
ATCGGCCTAATTCTGCAGGATCTAACGTTTGTGCATGTGGGCAACCAGGA
CTACTTGTCCAAGGGCGTCATAAACTTCTCCAAGCGCTGGCAGCAGTACA
ACATAATTGACAACATGAAACGTTTTAAGAAATGTGCCTATCCATTTCGA
CGCAACGAGCGCATTATACGCTTCTTTGATAACTTCAAGGACTTTATGGG
CGAGGAGGAGATGTGGCAGATATCGGAGAAGATCAAGCCGCGTGGACGCC
GCCCCGTTAACTATTAGAAGCTTTCTAGACCAT
BS31303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C3G-RE | 4254 | CG42328-PE | 1..4254 | 17..4267 | 21190 | 99.9 | Plus |
| C3G-RC | 4563 | CG42328-PC | 512..4563 | 216..4267 | 20260 | 100 | Plus |
| C3G-RL | 4074 | CG42328-PL | 23..4074 | 216..4267 | 20260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C3G-RE | 5651 | CG42328-RE | 460..4713 | 17..4267 | 21190 | 99.9 | Plus |
| C3G-RJ | 5027 | CG42328-RJ | 36..4089 | 214..4267 | 20270 | 100 | Plus |
| C3G-RG | 5244 | CG42328-RG | 254..4306 | 215..4267 | 20265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6783890..6784554 | 3137..2473 | 3325 | 100 | Minus |
| X | 23542271 | X | 6786156..6786812 | 2360..1704 | 3285 | 100 | Minus |
| X | 23542271 | X | 6788461..6789051 | 806..216 | 2955 | 100 | Minus |
| X | 23542271 | X | 6782963..6783532 | 3876..3307 | 2850 | 100 | Minus |
| X | 23542271 | X | 6787590..6788126 | 1533..997 | 2685 | 100 | Minus |
| X | 23542271 | X | 6788203..6788394 | 997..806 | 960 | 100 | Minus |
| X | 23542271 | X | 6800050..6800251 | 215..17 | 930 | 98.5 | Minus |
| X | 23542271 | X | 6787349..6787521 | 1705..1533 | 865 | 100 | Minus |
| X | 23542271 | X | 6783608..6783779 | 3308..3137 | 860 | 100 | Minus |
| X | 23542271 | X | 6782354..6782487 | 4267..4134 | 670 | 100 | Minus |
| X | 23542271 | X | 6782561..6782692 | 4134..4003 | 660 | 100 | Minus |
| X | 23542271 | X | 6782770..6782897 | 4002..3875 | 640 | 100 | Minus |
| X | 23542271 | X | 6784624..6784735 | 2472..2361 | 560 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6659..6907 | 147..388 | 209 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2510 | 280..388 | 207 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6827 | 279..383 | 207 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6850 | 247..388 | 205 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2283..2419 | 249..387 | 203 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6939 | 205..400 | 190 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2456 | 280..388 | 180 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6938 | 290..509 | 178 | 56.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 283..386 | 175 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6944 | 205..386 | 170 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2545 | 189..384 | 169 | 58.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1161 | 280..338 | 169 | 76.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6879 | 280..387 | 166 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2549 | 286..381 | 164 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2446 | 286..387 | 147 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2544 | 286..331 | 140 | 78.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3210..3342 | 208..337 | 136 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1585 | 283..338 | 127 | 69.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1163 | 286..362 | 127 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2889 | 279..380 | 125 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1587 | 286..319 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2665 | 287..320 | 125 | 85.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 980..1040 | 279..338 | 122 | 68.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 978..1032 | 286..339 | 119 | 70.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 102..148 | 275..321 | 118 | 72.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11280..11326 | 275..321 | 118 | 72.3 | Plus |
BS31303.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-15 12:01:26 Download gff for
BS31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C3G-RE | 441..4694 | 17..4267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:11 Download gff for
BS31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C3G-RE | 460..4713 | 17..4267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:42 Download gff for
BS31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C3G-RE | 460..4713 | 17..4267 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:42 Download gff for
BS31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6782354..6782486 | 4135..4267 | 100 | <- | Minus |
| X | 6782561..6782692 | 4003..4134 | 100 | <- | Minus |
| X | 6782770..6782895 | 3877..4002 | 100 | <- | Minus |
| X | 6782963..6783532 | 3307..3876 | 100 | <- | Minus |
| X | 6783610..6783778 | 3138..3306 | 100 | <- | Minus |
| X | 6783890..6784554 | 2473..3137 | 100 | <- | Minus |
| X | 6784624..6784735 | 2361..2472 | 100 | <- | Minus |
| X | 6786156..6786812 | 1704..2360 | 100 | <- | Minus |
| X | 6787351..6787520 | 1534..1703 | 100 | <- | Minus |
| X | 6787590..6788125 | 998..1533 | 100 | <- | Minus |
| X | 6788203..6788393 | 807..997 | 100 | <- | Minus |
| X | 6788461..6789051 | 216..806 | 100 | <- | Minus |
| X | 6800050..6800251 | 17..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:11 Download gff for
BS31303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6676594..6676725 | 4003..4134 | 100 | <- | Minus |
| arm_X | 6676803..6676928 | 3877..4002 | 100 | <- | Minus |
| arm_X | 6676387..6676519 | 4135..4267 | 100 | <- | Minus |
| arm_X | 6676996..6677565 | 3307..3876 | 100 | <- | Minus |
| arm_X | 6677643..6677811 | 3138..3306 | 100 | <- | Minus |
| arm_X | 6677923..6678587 | 2473..3137 | 100 | <- | Minus |
| arm_X | 6678657..6678768 | 2361..2472 | 100 | <- | Minus |
| arm_X | 6680189..6680845 | 1704..2360 | 100 | <- | Minus |
| arm_X | 6681384..6681553 | 1534..1703 | 100 | <- | Minus |
| arm_X | 6681623..6682158 | 998..1533 | 100 | <- | Minus |
| arm_X | 6682236..6682426 | 807..997 | 100 | <- | Minus |
| arm_X | 6682494..6683084 | 216..806 | 100 | <- | Minus |
| arm_X | 6694083..6694284 | 17..215 | 98 | | Minus |
BS31303.pep Sequence
Translation from 16 to 4266
> BS31303.pep
MRVLNTELRLRFKNRKPRPFNRAASADDAMDLGSGVGVGTGIANGAGIGV
GATIMPLDQLNGATSMNGSISSPSTPGTCSSGIGVGGGGCSSSSNNSINS
GSYSTACTPPPPTHQHHSQHQQLQGTPGGSSRVGGAGAGGGGGVPPAPPS
AGSSGHKNSLKGTKLARRARSFKDDLIEKISLMRTTNNTLGRSHSPHSPR
TKHGTKAPPTTEEVLRSTQTLETHVKDISNALKHFRDVILKKKLEVLPGN
GTVILETIASMYSVIQTYTLNENSAIMSSATLQVYQSLGKLIKLCDEVML
SEDSGECASLSNENVREVIDLLEDAVRNLVTLAQGKLKEQDQCAFRYSGS
GLGGIGAAAEIMGAVTASPGASVPGTGVMRVSAAESAAQRTSLPDIALTP
KERDILEQHNVNPMRGSHSTESILRDTSPPPKPPLPNRASNPPPLPPKRR
SQPSASAGTVGVGCSSSTSTSNQASPLPYAQSHNISLNSDLDCSSNISLL
NYGVDRLSVRSRSPDENSQCSFDSALNHSREEEDQQQQHQHLRSFPKLAA
MMDEDMDKMVSYSFVSMREFRTSTQTTDYSVQSSTKSSSSNSEIAFSISE
STAVGSSSEYQQISQLVSHSQRHISSSSSSCTTTTTSSSTTTGYGSSEVE
QLQQQQQQQTTTTPADLAPALPPKSIQRSSLTRHDSPGVGDELDEVQSSS
GWASHRSSQSEVAELRQLSPLHHLNHHPHTASAGQLQQWHSKHHSLIEGP
RLQLAGSGSCSAFDQRHLDQEPPPLPIKKKHILAYMEICSASTRSIEQHR
HTMHACNISRNISHSQTMNIMPMSKELSPELEMPPALPPKNYKQRKATSM
VASPTLQPVIVTTPPPSPKPTLGENGSTGRPDSRMATVCEELNDAVASED
AMPEPRSPVLDSNENVSAVDDGQTFYCHSHQLPAAEMEMSEDASSADNQP
ITTPQVLEEQEEPTAESRPLVAVHESVKPANVDEDEEAERADMLINMLEE
VNITRYLILKKREEDGPEVKGGYIDALIVHASRVQKVADNAFCEAFITTF
RTFIQPIDVIEKLTHRYTYFFCQVQDNKQKAAKETFALLVRVVNDLTSTD
LTSQLLSLLVEFVYQLVCSGQLYLAKLLRNKFVEKVTLYKEPKVYGFVGE
LGGAGSVGGAGIAGSGGCSGTAGGGNQPSLLDLKSLEIAEQMTLLDAELF
TKIEIPEVLLFAKDQCEEKSPNLNKFTEHFNKMSYWARSKILRLQDAKER
EKHVNKFIKIMKHLRKMNNYNSYLALLSALDSGPIRRLEWQKGITEEVRS
FCALIDSSSSFRAYRQALAETNPPCIPYIGLILQDLTFVHVGNQDYLSKG
VINFSKRWQQYNIIDNMKRFKKCAYPFRRNERIIRFFDNFKDFMGEEEMW
QISEKIKPRGRRPVNY*
BS31303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C3G-PE | 1417 | CG42328-PE | 1..1417 | 1..1416 | 7286 | 99.9 | Plus |
| C3G-PF | 1468 | CG42328-PF | 1..1468 | 1..1416 | 7224 | 96.5 | Plus |
| C3G-PK | 1468 | CG42328-PK | 1..1468 | 1..1416 | 7223 | 96.4 | Plus |
| C3G-PL | 1357 | CG42328-PL | 1..1357 | 60..1416 | 6963 | 99.5 | Plus |
| C3G-PC | 1520 | CG3126-PB | 111..1520 | 5..1416 | 6961 | 96.4 | Plus |
