BS31310.complete Sequence
3821 bp assembled on 2012-09-25
GenBank Submission: KX803365
> BS31310.complete
GAAGTTATCAGTCGACATGTCTGGGCAGCCAACAGCCGTGGACTGCTTAG
AGAGCAGTGGAAGCACAGTGGAGGATGTCCAAGAAACACCGGCGTCGAGG
GAAAAAAGTTACGGGTTGCCGGTGCGCAAAGGAGAAAATAGCTTGGAGTC
TCCTGCAGAACAAGCCGCAAAGGATGTGGAAATTGAGGAACTGACACACA
GTGAAGCAATCGCCGCCACCGGTTCAACCAGGAAGCAGTGCCCATATGGA
GGTAAGGCCCCTGATGAACCTGGAAAGTTGGCCGACGAATCGGAGGACCG
CAAGGGAGAGAACACGAAAGCCATTGCAAGCAGCCCGGTTTTGGTAGCTG
TGGATTCGGACAGCAGTGTTGAGCTAATAGAGAGTCCTGTCAAATTCTCC
TCCGCCAACGAAAGTGAGAAAGATCCGCCAAAACCAGATGCTGTCAATGA
AGCTGCGGCTAAAGAGGCCGAGGAAATGACTGATAGCAGCATCAGCAGTC
CCACATCCGAAAGTTTTCCTGAAAAAGATGAAAAGACCAATAAGGAAAAT
GAGCAAGAACCTCCTGGCATGGAGGTAGATCAGGACGTCGAGGAGTCAAT
AAGTCGACCAGCAGAAGAATACAAAATTGAGAATACATTAAAAGGTCACA
AGCGTATTAGCTTAACGGAAATCGAAGAACACAAAATTGTTGATAAAAAA
GACGATGTCCTAGAGGTGGAGCTTGAAAAGGGCACTGCTCCGAAAGCTGC
AGAAGACGAGAAGCTGAACGCTTTGTTATCAGATGGAGATGTCTTCTACG
ACAAGGAATGTGTCAACTGCAATTGCACAAAGCTTCATAAACAGTACGTG
TTGGCTAACATGGCCACTTTAAACTTTTACCAGGTGCTCCGAAAGTCTTC
CAAGCAGCAGTTCCTCTGCATGGGATGCCATGACACAGCAATGGACTTGT
ATGAGGAGTATGCTGGACAACTAATGGCCAAGCAGCCGCTGCTGCTAAAG
GATTTCCATCAGGATCACGCCGACTTTGTGGCTCTGGACAGCAGCGATGA
GGAGGAAGAGGAGAAGCAGCCAGAAAAATCGGACTTTTCGAAAAACAAGC
TGCAGCTCATCGAAGATGAACTCGATGATGCCATCAAAAATGTACTTAAC
AAGGTGGATTTTACGGCTCAGCTGTCCTGGTCAAAAACTATTCTCCAGGC
GAAAGCAGACCACTTGGAGCGACAATTCGCACTGGCAGATGTGGAACTCG
AAAAAGTTCAGACCACCGCTGACAAAATGCACTGCGCTTTGTATAACTCG
TGTCCGGTGGCACACAAACATCTGCCCACCCTGGACATTGAACCCAGTGA
CTATGTGCATGAAGTTCCACCTCCTGGCGAAATCGTGCGTCCTCCAATAC
AGTTGGGAGAGACATACTACGCTGTTAAGAACAAGGCTATTGCCAGCTGG
GTGTCCATAAAGGTAATCGAGTTTACAGAGAGCACCGCCATCAACGGAAA
CACGATGAAGAGCTACAAGATTAGGTACCTCAACACTCCGTACCAGATGA
TCAAGACAGTGACGGCCAAGCACATTGCCTACTTCGAACCACCGCCAGTG
CGACTGACCATTGGTACCCGCGTGATTGCGTACTTCGATGGCACCACTTT
GTCGCGGGGCAAGGATAAGGGCGTGGTGCAGAGCGCCTTTTATCCAGGCA
TCATCGCTGAGCCGTTGAAGCAGGCCAATCGCTACCGCTACCTAATATTC
TACGACGATGGGTACACTCAGTACGTTCCGCACCGCGATGTCCGTCTAGT
TTGCCAGGCTTCCGAGAAAGTGTGGGAGGACGTACACGCCGCATCGCGCG
ATTTCATACAGAAGTACGTGGAGAAGTACTCCGTGGATCGTCCAATGGTG
CAATGCACCCGGGGACAAAGTATGACCACTGAATCGAACGGGACCTGGCT
GTACGCGCGCGTCATTGACATCGACTGCAGCTTGGTGTTGATGCAGTTTG
AGGGCGACAAAAACCATACGGAGTGGATATACAGGGGTTCATTGCGCTTG
GGTCCTGTCTTCAGGGAAACCCAGAACAATATGAACAGTTCAAGCGCACA
GCAGCTGCGTGTCCCAAGACGCACGGAGCCCTTTATTCGGTACACCAAGG
AGATGGAGTCCAGCAGCAAGGTGAACCAGCAGATGCGTGCCTTTGCCCGC
AAGAGCAGCGCCTCCGCCCAAAATAACGCATTAGCGGCTGCATCTTCGGC
AGCAACCCCAGCCGGAGGACGCACCAATGCAGGAGGTGTCAGCACCAGTA
ATAGCGCAAGTGCTGTGCGACACCTAAACAACTCGACAATCTACGTGGAC
GACGAGAACAGGCCCAAGGGCCATGTAGTCTACTTTACAGCCAAGCGGAA
TCTGCCTCCCAAAATGTACAAGTGCCACGAGTGCAGCCCGAACTGCCTCT
TTAAGATCGTTCACCGTCTGGACAGCTACAGTCCGTTAGCGAAGCCTCTG
CTTTCTGGCTGGGAACGTCTTGTCATGCGGCAGAAGACCAAGAAGTCCGT
GGTATACAAGGGACCTTGTGGCAAAAGCTTGCGCAGCCTGGCCGAAGTTC
ACAGGTACCTTCGAGCTACTGAAAATGTGTTGAACGTAGACAATTTTGAC
TTTACGCCCGACCTCAAGTGTCTGGCCGAGTACTCCATTGATCCCTCGAT
CGTGAAGGACACGGACATTTCAAAGGGGCAGGAGAAGATGGCGATTCCGC
TGGTAAACTACTACGACAACACCCTGCCGCCCCCATGCACCTACGCGAAG
CAGCGCATCCCTACCGAGGGTGTTCATCTGAATCTGGACGAGGAGTTCCT
CTTGTGCTGCGACTGCGAGGACGACTGCTCGGACAAGTCAAAGTGCGCCT
GTTGGCAGCTAACGGTGGCGGGCGTGCGGTACTGTAACCCGAAGAAACCC
ATCGAGGAGATAGGCTACCAGTACAAGCGGCTCCACGAGCACGTGCCCAC
CGGCATCTACGAGTGCAACTCGCGCTGCAAGTGCAAGAAGAATTGCCTGA
ACCGGGTGGTGCAGTTCTCCCTAGAGATGAAACTGCAGGTGTTCAAGACC
TCAAATCGTGGATGGGGCTTGCGCTGCGTTAACGACATCCCCAAGGGTGC
TTTCATCTGTATTTACGCCGGCCATCTGCTCACGGAGACGATGGCCAACG
AAGGCGGACAGGACGCCGGCGACGAGTATTTCGCGGACTTAGATTACATA
GAGGTCGCTGAACAGTTAAAAGAGGGATACGAGTCGGAGGTGGACCACTC
GGACCCGGACGCCGAGGAGGACAACGGGGGACCCGATGCCGAGGACGATG
ACGACTTCCGGCCAAACTATCACTACCAGCGCAAAATCAAGCGCTCTTCC
AGAAGCGGCTCCACGCAGAACAGCTCCACTCAGAGCAGCGAGTTGGACTC
GCAGGAGCGTGCGGTGATCAACTTTAACCCAAATGCTGATCTGGACGAGA
CGGTGCGGGAGAACTCGGTGCGGAGGCTTTTCGGCAAGGACGAGGCGCCC
TACATCATGGACGCCAAGACAACGGGCAACCTTGGACGCTATTTCAACCA
CTCGTGCAGCCCCAATCTCTTCGTGCAGAACGTGTTCGTGGATACTCACG
ACCTGCGTTTCCCCTGGGTTGCCTTCTTCTCGGCCGCGCACATCCGCTCC
GGCACCGAGCTGACTTGGAACTACAATTACGAGGTGGGCGTGGTGCCCGG
CAAGGTGTTGTACTGCCAGTGCGGGGCCCCCAATTGCCGCCTTCGTCTGC
TCTAAAAGCTTTCTAGACCAT
BS31310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-RA | 3789 | CG12196-PA | 1..3789 | 17..3805 | 18930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-RA | 3937 | CG12196-RA | 89..3877 | 17..3805 | 18930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24778874..24779813 | 956..17 | 4700 | 100 | Minus |
| 2R | 25286936 | 2R | 24776646..24777408 | 2882..2120 | 3800 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24775859..24776576 | 3598..2881 | 3590 | 100 | Minus |
| 2R | 25286936 | 2R | 24777467..24777973 | 2119..1613 | 2535 | 100 | Minus |
| 2R | 25286936 | 2R | 24778344..24778630 | 1357..1071 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 24778033..24778291 | 1615..1357 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 24775594..24775800 | 3805..3599 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 24778699..24778818 | 1073..954 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:09:49 has no hits.
BS31310.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 10:32:31 Download gff for
BS31310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 102..3888 | 17..3803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:53 Download gff for
BS31310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 89..3875 | 17..3803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:28 Download gff for
BS31310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 89..3875 | 17..3803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:28 Download gff for
BS31310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24775596..24775800 | 3599..3803 | 100 | <- | Minus |
| 2R | 24775859..24776575 | 2882..3598 | 100 | <- | Minus |
| 2R | 24776647..24777408 | 2120..2881 | 99 | <- | Minus |
| 2R | 24777467..24777972 | 1614..2119 | 100 | <- | Minus |
| 2R | 24778035..24778290 | 1358..1613 | 100 | <- | Minus |
| 2R | 24778344..24778627 | 1074..1357 | 100 | <- | Minus |
| 2R | 24778699..24778816 | 956..1073 | 100 | <- | Minus |
| 2R | 24778875..24779813 | 17..955 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:53 Download gff for
BS31310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20663119..20663323 | 3599..3803 | 100 | <- | Minus |
| arm_2R | 20663382..20664098 | 2882..3598 | 100 | <- | Minus |
| arm_2R | 20666398..20667336 | 17..955 | 100 | | Minus |
| arm_2R | 20664170..20664931 | 2120..2881 | 99 | <- | Minus |
| arm_2R | 20664990..20665495 | 1614..2119 | 100 | <- | Minus |
| arm_2R | 20665558..20665813 | 1358..1613 | 100 | <- | Minus |
| arm_2R | 20665867..20666150 | 1074..1357 | 100 | <- | Minus |
| arm_2R | 20666222..20666339 | 956..1073 | 100 | <- | Minus |
BS31310.pep Sequence
Translation from 16 to 3804
> BS31310.pep
MSGQPTAVDCLESSGSTVEDVQETPASREKSYGLPVRKGENSLESPAEQA
AKDVEIEELTHSEAIAATGSTRKQCPYGGKAPDEPGKLADESEDRKGENT
KAIASSPVLVAVDSDSSVELIESPVKFSSANESEKDPPKPDAVNEAAAKE
AEEMTDSSISSPTSESFPEKDEKTNKENEQEPPGMEVDQDVEESISRPAE
EYKIENTLKGHKRISLTEIEEHKIVDKKDDVLEVELEKGTAPKAAEDEKL
NALLSDGDVFYDKECVNCNCTKLHKQYVLANMATLNFYQVLRKSSKQQFL
CMGCHDTAMDLYEEYAGQLMAKQPLLLKDFHQDHADFVALDSSDEEEEEK
QPEKSDFSKNKLQLIEDELDDAIKNVLNKVDFTAQLSWSKTILQAKADHL
ERQFALADVELEKVQTTADKMHCALYNSCPVAHKHLPTLDIEPSDYVHEV
PPPGEIVRPPIQLGETYYAVKNKAIASWVSIKVIEFTESTAINGNTMKSY
KIRYLNTPYQMIKTVTAKHIAYFEPPPVRLTIGTRVIAYFDGTTLSRGKD
KGVVQSAFYPGIIAEPLKQANRYRYLIFYDDGYTQYVPHRDVRLVCQASE
KVWEDVHAASRDFIQKYVEKYSVDRPMVQCTRGQSMTTESNGTWLYARVI
DIDCSLVLMQFEGDKNHTEWIYRGSLRLGPVFRETQNNMNSSSAQQLRVP
RRTEPFIRYTKEMESSSKVNQQMRAFARKSSASAQNNALAAASSAATPAG
GRTNAGGVSTSNSASAVRHLNNSTIYVDDENRPKGHVVYFTAKRNLPPKM
YKCHECSPNCLFKIVHRLDSYSPLAKPLLSGWERLVMRQKTKKSVVYKGP
CGKSLRSLAEVHRYLRATENVLNVDNFDFTPDLKCLAEYSIDPSIVKDTD
ISKGQEKMAIPLVNYYDNTLPPPCTYAKQRIPTEGVHLNLDEEFLLCCDC
EDDCSDKSKCACWQLTVAGVRYCNPKKPIEEIGYQYKRLHEHVPTGIYEC
NSRCKCKKNCLNRVVQFSLEMKLQVFKTSNRGWGLRCVNDIPKGAFICIY
AGHLLTETMANEGGQDAGDEYFADLDYIEVAEQLKEGYESEVDHSDPDAE
EDNGGPDAEDDDDFRPNYHYQRKIKRSSRSGSTQNSSTQSSELDSQERAV
INFNPNADLDETVRENSVRRLFGKDEAPYIMDAKTTGNLGRYFNHSCSPN
LFVQNVFVDTHDLRFPWVAFFSAAHIRSGTELTWNYNYEVGVVPGKVLYC
QCGAPNCRLRLL*
BS31310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-PA | 1262 | CG12196-PA | 1..1262 | 1..1262 | 6664 | 100 | Plus |
| Su(var)3-9-PA | 635 | CG43664-PA | 406..537 | 942..1077 | 220 | 36.4 | Plus |
| G9a-PA | 1637 | CG2995-PA | 1339..1517 | 900..1076 | 167 | 28.8 | Plus |
| G9a-PB | 1657 | CG2995-PB | 1359..1537 | 900..1076 | 167 | 28.8 | Plus |
