BS31316.complete Sequence
3179 bp assembled on 2012-07-30
GenBank Submission: KX805723
> BS31316.complete
GAAGTTATCAGTCGACATGGATGTGCCCGATGACAATTTTGGGCCGTCAA
AGCCGTGTGACAAGCAGCCCTTAGCTGGCAACTCTAGCAGCGCTACCAAT
TCATCGTCGCATACCGGTGGTAACGGTAACGTTGATTCCGCATTCGAATC
ATCTACAGCTGCAGGACCTAGTTCCGGCGCCAATCAAAGTAGCACAGGCG
GTGCTATAGATGAACAAGGTTCCATTGGTGAACAGAGTGCCGGCGTGGGA
CAAAACATTATTGAGGGCGACTTGCTGGTGTTAAATGCCAATTCCACAAA
CGTGGATCTTTCGACTCACCGGGATGGCTCTAGCTTTAAAGACTCGAACA
CTGAGCAGGGAAAAAAAAGTACTATGATTAAGACTTCAAAGACATTAAAT
GACAAGAGTCAATTTGAACGCCGCAGACGCCGTGGCCGTCAACGTGAACG
TCATCGTGAGCCCAGCACGCATCGTGACGATCTTGAACCGTGCGATTTAG
GTCTAATGGGATGGACTGGAGAATTCCCAAAGCTAACACCCATATCCAAC
ATCGAAAGCAACTCGGATAAAGAACCGCTGTCGACGGCCAAGCCAGGTGT
ACTGCCATGGAGTGGCCTAAAGGTTTTTCCGAGAGTGGAACCACAAGAGG
AGACAGCGGCAGGTACAACAAAGCCGGCTCATATCACTAATAAGTCTGAG
GAGCAGCAGCAGCAGCCGTCTCTAACAACGCCGATAATGACGTCGCCACT
CGACGCCTCCCAGGGGGAATTGGATGCAGCCATTAAAAGCCCTTTGAACG
CAAAAAAAAGTCCAAATGCAACTGGTATTGCAACAACATCCAAGTCCAGT
ACAACACCAACCAACATGCAACCATCAGACTTATACAACCAGGTTGAAGA
TAAAAAAGAGGATACCACCAAGAAGCAGGCGGAAGCTGATCATACCTTGC
ACAAATCACTTAAGGACGCTCGCATCGTAAAACGTTCTATGTCCACCCAT
TCGCCTCCGGAGCATTCGCGTCGTTCAGTGCGCTTCAGTAGCCATACGCC
TCTGACCGATGAGACGAACATAATGAAAGAAACATCCACCGAAACCTCTT
TGAAAGTTATTTTCGAACGCCTAAAGCAAACTGGCGTAGAGCGAGATCTC
TTTATACCCAGCTCCGAAAATCCCAGGCCTCGCAGCAATGGTAGCCCGGT
CCCAAAGGTGGCGGAGATGGAACATGTGGCGGTTGTGAAGTGCAAAACGG
TGGCGAAGCAAGGGGCGGTGGTGAAAGGCAAGGCTGGGTTGGCCAACCCG
TCCAACGTAATGCCCCAGACGCCTGCCTTAACGGTCACTGGAAAGCGAGT
GTCGAAGCCCAAGGTGCCCAAAGGGGCAAGTCCACCGAGTGAGGGCTGGA
CCTCGACCAGGGCGGTTAAGGGGAATTCTCGGGCAGACTACACCAACAGC
AGCTCGTGCGGTTCACCGATTGGTAATACCAACATTCGCAGGCGCAGAGC
TCACGCAAAGGCAGCCCCTGATAAGTCAAAGCCTTGTGTGCGCTGCGCGG
CTTCTGTTCATCCGTCTGGACCTAAGTTGTGCAAGAAGTGTATCTATGAG
AAGGGATATGCCAATAAGAAATGGATGAAAAAGACTGGAGGAAATGAGGA
TCATTATGATGATGACGATGACAGTGACTTCAGCATGATAGAAGTCACTT
TGGAAAATGAAATATCCGTTCAACAGGCGGAGAAAAAGCAGTTAGAAAAC
GTGAATAAGCAGACCGTTATAAAGGAACAAGAGGTTGTTGTAATTGGAGG
GCGCAAGGCTATAGCCATCATAGCCGATCCGATTGGTTGCAATCTGAAAG
TGATTCCAAACCGGCAGAATTTGGCTGGCCTTAAAAAGATCTCAAAGGAC
AAATGTAGCTCCAGTTTGGTGCAGAGCCTGGGCGATTGTCACATCGGATG
CCAGATAGTGATGGCCGTTATGAAAATCATGACGATGAAGGATCGTGTAA
ATATGGCGCAGGTTTGCAAAACATGGGCCATGATCAGTCAGGATAAGAGT
GTATGGCGCACAGTCATGCTACGCGATACCCATATCAGCAACTGGCCGCG
ATTTATCCGTGAACTCGCAAATAATTGCACACGCGAACTGGACATGCTGG
GCGTGATATTGCCGAATCCTCCGGATATTCTCGCTACACTCGACATTAGC
GTCCTGAAAGCATTGCGTGTTCTTCGCACTTGTCCAGTAGATGACCAGTT
CCTCTTTAAGGTCTTTCGTGAATTGCCCCAACTGCTGGAGCTAAGGGCAA
TCTGCTACAGTCCAACTTTTAATTTTTTAAATTTGGCACGACAATGGTCT
AAGATTCGCGTGCTTCAAATCTTAATGACGGACCACAGAAGCAAAGTGGA
ATCACTAGACTCTCTGGGCGACCTGGTGCATCTAACTGAGTTGAATATAC
GTGGAGTGAATTATATAGGCTCGCAGGACTTCCGCTTCTTGAAGAAACTA
GTTAACCTGAAGGTGCTAGTGTTGTCTTCATGCCAGGGCATGGATACCGA
GGAATTTGGCCAGCAAGTGCTGCCCTTTTTAACGTCTCTACGCAGGCTCC
GCTTGGAGAACAAGCACATGATCAATACCACTTTTCCGCTGTACCACATT
ATGTGTGGTGTAGCCGCTGCTTGTTCGGTACAGCAACTGGAGCTGGTGAA
CGTCGAGGTGGATGACCTTCTAACTTCGTTGATTGGAATGTGCACCACTG
TTACGCACCTGTTGCTCGTCCCAAAGTGTCTTCAAAATTCGGCCAACGTG
ATCTATTCCGTAATGCGGGCCGTTCGCGAGAATGCCTCGCAGCTTCGCGT
GTTCCGCCTAGGATTGGTTACCCAGCTGTTGAGTGCAACGGGTGAGCTGT
ACAGGGGAAGTAAGAAGGATGTGATCCCCGTGGAGCGCCCTGTACCGGGA
ATTCCGCTGGACGATGACCTTAATTATTGTGCTCCCGATGACCGTTGCAT
TGAAACGGACCACACGGAATGCGTTACCTTTCTGCCCGCCAAGCGCTTGC
TGATGATACTGCGCGATGTGGCACCAACAACATTTGTTACGTTTGTTAAG
GTGAACATGTTCAACAGCACCATGGTTACCTTCCTCAAACGGCCACAGTT
GAAAAACAAGTAAAAGCTTTCTAGACCAT
BS31316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2247-RB | 3147 | CG2247-PB | 1..3147 | 17..3163 | 15735 | 100 | Plus |
| CG2247-RA | 3147 | CG2247-PA | 1..3147 | 17..3163 | 15735 | 100 | Plus |
| CG2247-RD | 3144 | CG2247-PD | 1..3144 | 17..3163 | 15655 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2247-RB | 3563 | CG2247-RB | 124..3274 | 13..3163 | 15755 | 100 | Plus |
| CG2247-RA | 3767 | CG2247-RA | 124..3274 | 13..3163 | 15755 | 100 | Plus |
| CG2247-RD | 3560 | CG2247-RD | 124..3271 | 13..3163 | 15675 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11606783..11607957 | 3163..1989 | 5875 | 100 | Minus |
| X | 23542271 | X | 11608703..11609309 | 1497..891 | 3035 | 100 | Minus |
| X | 23542271 | X | 11610474..11610832 | 371..13 | 1795 | 100 | Minus |
| X | 23542271 | X | 11609400..11609714 | 894..580 | 1575 | 100 | Minus |
| X | 23542271 | X | 11608233..11608501 | 1852..1584 | 1345 | 100 | Minus |
| X | 23542271 | X | 11610202..11610413 | 580..369 | 1060 | 100 | Minus |
| X | 23542271 | X | 11608013..11608152 | 1991..1852 | 700 | 100 | Minus |
| X | 23542271 | X | 11608553..11608643 | 1585..1495 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:09:25 has no hits.
BS31316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:47 Download gff for
BS31316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 122..3266 | 17..3161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:57 Download gff for
BS31316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 128..3272 | 17..3161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:21 Download gff for
BS31316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 128..3272 | 17..3161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:21 Download gff for
BS31316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11606785..11607955 | 1991..3161 | 100 | <- | Minus |
| X | 11608014..11608152 | 1852..1990 | 100 | <- | Minus |
| X | 11608234..11608499 | 1586..1851 | 100 | <- | Minus |
| X | 11608553..11608640 | 1498..1585 | 100 | <- | Minus |
| X | 11608703..11609307 | 893..1497 | 100 | <- | Minus |
| X | 11609402..11609713 | 581..892 | 100 | <- | Minus |
| X | 11610202..11610413 | 369..580 | 100 | <- | Minus |
| X | 11610477..11610828 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:57 Download gff for
BS31316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11502047..11502185 | 1852..1990 | 100 | <- | Minus |
| arm_X | 11500818..11501988 | 1991..3161 | 100 | <- | Minus |
| arm_X | 11502267..11502532 | 1586..1851 | 100 | <- | Minus |
| arm_X | 11502586..11502673 | 1498..1585 | 100 | <- | Minus |
| arm_X | 11502736..11503340 | 893..1497 | 100 | <- | Minus |
| arm_X | 11503435..11503746 | 581..892 | 100 | <- | Minus |
| arm_X | 11504235..11504446 | 369..580 | 100 | <- | Minus |
| arm_X | 11504510..11504861 | 17..368 | 100 | | Minus |
BS31316.pep Sequence
Translation from 16 to 3162
> BS31316.pep
MDVPDDNFGPSKPCDKQPLAGNSSSATNSSSHTGGNGNVDSAFESSTAAG
PSSGANQSSTGGAIDEQGSIGEQSAGVGQNIIEGDLLVLNANSTNVDLST
HRDGSSFKDSNTEQGKKSTMIKTSKTLNDKSQFERRRRRGRQRERHREPS
THRDDLEPCDLGLMGWTGEFPKLTPISNIESNSDKEPLSTAKPGVLPWSG
LKVFPRVEPQEETAAGTTKPAHITNKSEEQQQQPSLTTPIMTSPLDASQG
ELDAAIKSPLNAKKSPNATGIATTSKSSTTPTNMQPSDLYNQVEDKKEDT
TKKQAEADHTLHKSLKDARIVKRSMSTHSPPEHSRRSVRFSSHTPLTDET
NIMKETSTETSLKVIFERLKQTGVERDLFIPSSENPRPRSNGSPVPKVAE
MEHVAVVKCKTVAKQGAVVKGKAGLANPSNVMPQTPALTVTGKRVSKPKV
PKGASPPSEGWTSTRAVKGNSRADYTNSSSCGSPIGNTNIRRRRAHAKAA
PDKSKPCVRCAASVHPSGPKLCKKCIYEKGYANKKWMKKTGGNEDHYDDD
DDSDFSMIEVTLENEISVQQAEKKQLENVNKQTVIKEQEVVVIGGRKAIA
IIADPIGCNLKVIPNRQNLAGLKKISKDKCSSSLVQSLGDCHIGCQIVMA
VMKIMTMKDRVNMAQVCKTWAMISQDKSVWRTVMLRDTHISNWPRFIREL
ANNCTRELDMLGVILPNPPDILATLDISVLKALRVLRTCPVDDQFLFKVF
RELPQLLELRAICYSPTFNFLNLARQWSKIRVLQILMTDHRSKVESLDSL
GDLVHLTELNIRGVNYIGSQDFRFLKKLVNLKVLVLSSCQGMDTEEFGQQ
VLPFLTSLRRLRLENKHMINTTFPLYHIMCGVAAACSVQQLELVNVEVDD
LLTSLIGMCTTVTHLLLVPKCLQNSANVIYSVMRAVRENASQLRVFRLGL
VTQLLSATGELYRGSKKDVIPVERPVPGIPLDDDLNYCAPDDRCIETDHT
ECVTFLPAKRLLMILRDVAPTTFVTFVKVNMFNSTMVTFLKRPQLKNK*
BS31316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2247-PB | 1048 | CG2247-PB | 1..1048 | 1..1048 | 5419 | 100 | Plus |
| CG2247-PA | 1048 | CG2247-PA | 1..1048 | 1..1048 | 5419 | 100 | Plus |
| CG2247-PD | 1047 | CG2247-PD | 1..1047 | 1..1048 | 5402 | 99.9 | Plus |
| CG2247-PC | 944 | CG2247-PC | 183..944 | 287..1048 | 3908 | 99.5 | Plus |
| CG2247-PC | 944 | CG2247-PC | 1..188 | 1..188 | 980 | 100 | Plus |
