BS31327.complete Sequence
3258 bp assembled on 2012-09-12
GenBank Submission: KX802492
> BS31327.complete
TTTTTTTTTGGGGAAACGCTTTCGCGTTTTTCGTGCGCCGCTTCACGAAG
TTATCAGTCGACATGCATGTTGAACAAACACGAATAAATATGCAGTCTCA
AGGACAGAGCCATCAACTGCCGTCCGCGGCCCATATATTATTAGATCAAA
ATCCGAATTCAACAGGCAGTAACCTAGTCGTAAAACAAAATGACATTCAA
TCTCTTTCATCAGTCGGTTTACTCGAGTTGGCCCATAGAGAATACCAAGC
TGTTGACTATGAAAGCGCGGAAAAGCATTGCATGCAATTATGGCGTCAAG
ACAGTACAAATACTGGAGTTTTGTTGTTGCTGTCATCTATTCACTTTCAG
TGCAGACGTCTTGATAAGTCAGCGCAATTCTCAACATTGGCAATAAAACA
AAACCCTGTGCTGGCAGAAGCTTATAGTAATTTAGGAAATGTTTTTAAAG
AGCGTGGACAGTTACAAGAAGCTTTAGACAACTATCGCAGAGCTGTACGT
CTAAAACCAGATTTTATTGATGGATACATTAATTTGGCTGCTGCATTAGT
TGCTGCTCGTGACATGGAGTCTGCCGTTCAAGCTTATATTACAGCGTTAC
AATATAATCCTGATCTGTATTGTGTGCGCAGCGATCTGGGAAATCTTCTT
AAGGCTCTCGGTCGTTTGGAAGAAGCCAAGGCTTGTTACCTAAAGGCAAT
TGAAACATGTCCTGGCTTTGCAGTTGCATGGAGTAACCTAGGATGTGTGT
TTAACGCTCAGGGAGAAATTTGGTTGGCTATACATCACTTTGAAAAAGCT
GTGACTCTTGATCCCAATTTTTTGGATGCATACATAAATTTGGGAAACGT
TCTTAAGGAGGCACGAATATTTGATAGAGCTGTGGCCGCCTATTTACGTG
CATTAAATCTATCTCCGAATAATGCTGTAGTTCATGGCAATTTGGCATGC
GTTTACTATGAACAAGGTCTTATTGATTTAGCTATCGATACATATAGGAG
GGCAATAGAACTGCAACCAAATTTCCCCGATGCGTACTGCAACCTTGCAA
ACGCTCTCAAAGAAAAGGGGCAGGTTAAAGAAGCTGAGGACTGCTATAAC
ACTGCACTAAGACTATGTTCAAATCATGCAGATTCCCTTAATAATTTAGC
TAACATAAAGAGAGAGCAGGGGTATATTGAAGAAGCTACGCGACTTTATT
TAAAAGCTTTGGAAGTTTTCCCCGATTTTGCTGCTGCTCATTCAAATTTG
GCATCTGTTTTGCAACAGCAAGGCAAATTAAAGGAAGCGTTAATGCATTA
TAAGGAAGCTATTAGAATTCAACCCACATTTGCTGATGCATATTCAAACA
TGGGGAATACTCTTAAAGAATTGCAAGATGTCAGCGGGGCATTGCAATGC
TACACGAGAGCAATTCAAATTAACCCAGCATTTGCTGATGCGCATAGTAA
TTTGGCAAGCATACACAAAGATTCCGGAAATATTCCTGAAGCGATTCAGT
CTTACCGAACGGCTCTAAAGTTAAAACCTGATTTTCCTGATGCATACTGC
AATTTGGCTCATTGCTTGCAAATTGTTTGTGATTGGACTGACTACGATAT
TCGCATGAAAAAACTGGTTAGCATTGTCACTGAGCAGCTTGAAAAAAACC
GTTTACCATCCGTGCATCCACACCACTCGATGCTTTATCCGTTGACACAT
GATTGTCGGAAAGCAATTGCAGCGCGACACGCTAATTTGTGTTTAGAAAA
AGTTCACGTGCTTCATAAAAAACCTTATAATTTCTTAAAGAAGTTGCCTA
CAAAAGGAAGGCTTCGAATAGGTTATCTTAGCTCGGACTTCGGGAATCAT
CCTACCTCGCATTTAATGCAATCTGTGCCAGGTCTTCATGATCGTTCAAA
AGTGGAAATCTTTTGCTATGCCTTAAGTCCAGATGATGGTACAACATTTC
GACACAAAATCAGTCGAGAGTCTGAAAACTTTGTGGATCTTTCTCAGATC
CCTTGTAATGGCAAGGCAGCGGACAAGATATTTAATGACGGTATACATAT
TTTGGTTAATATGAATGGCTACACAAAGGGTGCAAGAAATGAAATATTTG
CTCTTCGCCCTGCTCCTATTCAAGTAATGTGGTTAGGCTATCCAGGTACT
AGTGGGGCTAGTTTTATGGATTACATTATTACGGATTCTGTAACTAGTCC
ATTAGAATTGGCTTACCAATATAGTGAAAAATTGTCATATATGCCGCACA
CATATTTTATAGGTGATCATAAGCAAATGTTTCCACATTTAAAGGAACGA
ATAATTGTCTGTGACAAACAACAATCTTCCGTTGTTGACAATGTAACGGT
TATAAATGCAACAGATTTATCTCCCCTTGTTGAAAACACAGATGTAAAGG
AGATAAAAGAAGTTGTTAACGCACAAAAACCAGTCGAGATAACTCATAAA
GTTGCGGAGTTACCAAATACAACACAAATAGTATCAATGATAGCCACTGG
TCAAGTGCAAACATCTTTAAATGGCGTTGTAGTTCAAAACGGATTGGCCA
CTACCCAAACTAACAACAAGGCCGCTACTGGTGAAGAGGTACCACAAAAT
ATTGTAATAACTACTCGACGTCAATATATGTTACCAGATGACGCTGTTGT
GTATTGCAATTTTAATCAGCTATACAAAATCGATCCACAAACCCTCGAGT
CATGGGTAGAAATTTTAAAAAATGTGCCTAAGTCAGTTTTGTGGTTATTA
AGGTTTCCAGCAGTTGGTGAGCAAAATATTAAAAAAACCGTCAGTGACTT
TGGAATATCTCCTGATAGAGTAATATTTTCCAATGTTGCGGCAAAAGAAG
AGCACGTACGACGGGGTCAATTAGCTGATATATGTCTTGATACTCCTTTA
TGCAATGGGCATACAACATCTATGGACGTTTTGTGGACGGGTACCCCTGT
CGTAACTTTGCCAGGAGAGACGTTAGCCTCACGAGTGGCTGCCTCTCAGC
TGGCTACCCTTGGATGTCCAGAGTTAATAGCGCGTACAAGAGAAGAATAT
CAAAATATTGCTATACGCCTGGGAACAAAAAAAGAATATTTGAAAGCCTT
ACGGGCAAAAGTATGGAAAGCCCGCGTAGAGAGTCCTCTCTTTGATTGCT
CACAGTATGCCAAAGGATTAGAAAAATTGTTTCTACGAATGTGGGAAAAA
TACGAAAATGGAGAACTTCCGGACCACATTTCAGCAGTATAAAAGCTTTC
TAGACCAT
BS31327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxc-RB | 3180 | CG10392-PB | 1..3180 | 63..3242 | 15885 | 100 | Plus |
| sxc-RA | 3180 | CG10392-PA | 1..3180 | 63..3242 | 15885 | 100 | Plus |
| sxc-RC | 3180 | CG10392-PC | 1..3180 | 63..3242 | 15885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxc-RB | 3498 | CG10392-RB | 92..3273 | 63..3244 | 15895 | 100 | Plus |
| sxc-RA | 3557 | CG10392-RA | 151..3332 | 63..3244 | 15895 | 100 | Plus |
| sxc-RC | 3678 | CG10392-RC | 212..3393 | 63..3244 | 15895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5326061..5327792 | 1072..2803 | 8660 | 100 | Plus |
| 2R | 25286936 | 2R | 5329009..5329270 | 2983..3244 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 5316268..5316479 | 216..427 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 5320417..5320615 | 679..877 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 5325801..5326001 | 875..1075 | 990 | 99.5 | Plus |
| 2R | 25286936 | 2R | 5320005..5320192 | 425..612 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 5327847..5328028 | 2802..2983 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 5307499..5307654 | 63..218 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 5320248..5320317 | 612..681 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:05:58 has no hits.
BS31327.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-12 10:03:51 Download gff for
BS31327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxc-RB | 129..3306 | 63..3240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:56 Download gff for
BS31327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxc-RC | 212..3389 | 63..3240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:09 Download gff for
BS31327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxc-RC | 212..3389 | 63..3240 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:09 Download gff for
BS31327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5329010..5329266 | 2984..3240 | 100 | | Plus |
| 2R | 5307499..5307652 | 63..216 | 100 | -> | Plus |
| 2R | 5316269..5316479 | 217..427 | 100 | -> | Plus |
| 2R | 5320008..5320191 | 428..611 | 100 | -> | Plus |
| 2R | 5320248..5320316 | 612..680 | 100 | -> | Plus |
| 2R | 5320419..5320615 | 681..877 | 100 | -> | Plus |
| 2R | 5325804..5325999 | 878..1073 | 99 | -> | Plus |
| 2R | 5326063..5327791 | 1074..2802 | 100 | -> | Plus |
| 2R | 5327848..5328028 | 2803..2983 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:56 Download gff for
BS31327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1207753..1207821 | 612..680 | 100 | -> | Plus |
| arm_2R | 1216515..1216771 | 2984..3240 | 100 | | Plus |
| arm_2R | 1207924..1208120 | 681..877 | 100 | -> | Plus |
| arm_2R | 1213309..1213504 | 878..1073 | 99 | -> | Plus |
| arm_2R | 1195004..1195157 | 63..216 | 100 | -> | Plus |
| arm_2R | 1203774..1203984 | 217..427 | 100 | -> | Plus |
| arm_2R | 1207513..1207696 | 428..611 | 100 | -> | Plus |
| arm_2R | 1213568..1215296 | 1074..2802 | 100 | -> | Plus |
| arm_2R | 1215353..1215533 | 2803..2983 | 100 | -> | Plus |
BS31327.pep Sequence
Translation from 62 to 3241
> BS31327.pep
MHVEQTRINMQSQGQSHQLPSAAHILLDQNPNSTGSNLVVKQNDIQSLSS
VGLLELAHREYQAVDYESAEKHCMQLWRQDSTNTGVLLLLSSIHFQCRRL
DKSAQFSTLAIKQNPVLAEAYSNLGNVFKERGQLQEALDNYRRAVRLKPD
FIDGYINLAAALVAARDMESAVQAYITALQYNPDLYCVRSDLGNLLKALG
RLEEAKACYLKAIETCPGFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD
PNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYE
QGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVKEAEDCYNTALR
LCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVL
QQQGKLKEALMHYKEAIRIQPTFADAYSNMGNTLKELQDVSGALQCYTRA
IQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAH
CLQIVCDWTDYDIRMKKLVSIVTEQLEKNRLPSVHPHHSMLYPLTHDCRK
AIAARHANLCLEKVHVLHKKPYNFLKKLPTKGRLRIGYLSSDFGNHPTSH
LMQSVPGLHDRSKVEIFCYALSPDDGTTFRHKISRESENFVDLSQIPCNG
KAADKIFNDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGAS
FMDYIITDSVTSPLELAYQYSEKLSYMPHTYFIGDHKQMFPHLKERIIVC
DKQQSSVVDNVTVINATDLSPLVENTDVKEIKEVVNAQKPVEITHKVAEL
PNTTQIVSMIATGQVQTSLNGVVVQNGLATTQTNNKAATGEEVPQNIVIT
TRRQYMLPDDAVVYCNFNQLYKIDPQTLESWVEILKNVPKSVLWLLRFPA
VGEQNIKKTVSDFGISPDRVIFSNVAAKEEHVRRGQLADICLDTPLCNGH
TTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTREEYQNIA
IRLGTKKEYLKALRAKVWKARVESPLFDCSQYAKGLEKLFLRMWEKYENG
ELPDHISAV*
BS31327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxc-PB | 1059 | CG10392-PB | 1..1059 | 1..1059 | 5517 | 100 | Plus |
| sxc-PA | 1059 | CG10392-PA | 1..1059 | 1..1059 | 5517 | 100 | Plus |
| sxc-PC | 1059 | CG10392-PC | 1..1059 | 1..1059 | 5517 | 100 | Plus |
| CG4050-PB | 926 | CG4050-PB | 456..903 | 63..542 | 292 | 23.9 | Plus |
| CG4050-PA | 926 | CG4050-PA | 456..903 | 63..542 | 292 | 23.9 | Plus |
