BS31328.complete Sequence
3983 bp assembled on 2012-07-30
GenBank Submission: KX801400
> BS31328.complete
GAAGTTATCAGTCGACATGCAGTCGATGAAAGCCGATGAACTGCCGGAGA
ATCCACGGGAGCGATCCAGTCCCCTCTCGTCACTTATGTTCTGTTTTGCC
CTACCCGTTCTGTTTAAAGGCCGCAAGAAGACGCTGGAACAAAAGGATCT
ATATAGAGCCCTCAAAGAGCACAAATCGGATTCCCTGGGAGATCGGTTGT
GCGCAGCCTGGGATGAGCAGGTGGCGAAAAATGAAACTCCACGTTTGGGT
CGCGCCCTGACGAAAGTGTTTGGCTTTCATTTGTTCATTACGGGAGTATT
CCTGCTTGCCCAGGAGTTTTTGACCAAAGTCACCCAGCCCATTTGCCTGA
TTGGAGTGATGGCATACTTTGCCGGGAATGATCCGGATCGCTCCAAGGCC
CAGTTATGGGCAGCGGGTCTTATAGCTGGTTCCGTGTTTAGTGTGTGTAT
CGGTCATCCCTATATGCTGGGTCTACTTCATCTGGGCATGAAGATGCGCA
TTGCACTTAGCAGTCTAATCTATCGCAAGGCCCTGCGGCTGAGTAGAACC
GCTTTGGGTGACACCACAGTGGGTCAGGTGGTCAATCTGCTGTCCAACGA
TGTGGGTCGATTTGACTTGGTACTGATCAACGTTCACTACCTGTGGATAG
CTCCGTTGGAACTGATTGCAGTTACCTACCTGATGTATCTCGAGATTGGC
ATATCATCCATGTTTGGCGTTGCTATAATGCTTCTGTTCCTGCCATTCCA
ATCCTACCTCGGCAAGCGGACCAGCGTTCTACGCCTGCGTACCGCTTTGC
GAACGGACGAACGTGTCCGCATGATGAACGAGATTATCTCAGGCATCCAG
GTCATCAAGATGTACGCCTGGGAGAAGCCATTCGGCAAGGTGGTGGAGAT
GACCCGCTTCAATGAGATGCTGTGCATCAAGCAAGTGAACTACATCCGCG
GCATCCTCATCTCGTTTGCGATGTTCCTGTCCCGCATATTTACCTCCTCC
AGTCTGATTGCCTTCGTCCTGTTGGGAAACATTCTCAATGCCGAGAAGGC
TTTCTTCGTCACTGCCTACTACAATATCCTACGCCGATCGGTGACAATGT
TTTTCCCGCAGGGCATCTCCGAGTTTGCCGAGCTATTGGTTTCCGTTAGG
CGATTGGAGGCGTTCATGCATCGTCCGGAGACAAAAGTCAGGGATAAGTC
AAAGGTCAAAAATGCCAACCAGAAAGCAGAATCCCCAAATGGAGACAGTC
CTAAAGGCAATGGAATCCCAGAGAATTTGATCGAGTTCAGCCAATTTCAG
GCTCGCTGGGAGAGCCATTCGCTGGAGCCCACTCTGGAGGACATCAACCT
GCAGCTGGGTCGTCGAAAGTTGGTAGCCGTCATCGGACCCGTGGGCGCTG
GCAAGTCGAGTTTAATACAAGCAATACTTGGCGAACTACCGGGGGAAAGT
GGTACACTCAGGATCAATGGCAGTTACTCCTATGCAGCCCAGGAGCCCTG
GCTTTTTACGGGAACTGTTCGCCAAAACATCTTGTTCGGCTTGGATTGGG
ACAAGCATCGTTATCGCACCGTAGTGAAGAAGTGCGCCTTGGAAAGAGAC
TTTGAACTATTGCCCTTCGGGGACAAGACCATAGTCGGTGAGCGAGGAGC
ATCCCTCTCCGGCGGCCAGAAGGCCAGGATAAGTTTGGCACGAGCAGTTT
ACCGACGAGCAGATATTTATCTACTTGACGATCCACTCAGCGCTGTGGAT
ACCCACGTTGGGCGCCACTTGTTCGATCAGTGTATGCGCGGTTACTTGAG
GAGTGAGCTCGTCATACTGGTCACTCACCAGTTGCAGTTCCTGGAGCAGG
CTGATCTGATAGTTATCATGGATAAGGGTCGGATAAGCGCAATGGGGACG
TACTCGTCTATGAAGCGCAGTGGATTGGACTTTGCCCAACTGCTGACGGC
ACCCAATAAAGATGCTGAAGATTTGGACGAGATCGATGGTGCAGGTGGTG
ATGGTCTAGACCTTCTAAATGTACCCTCGCTGAGCAGAAGGGGCAGCAAG
AACAGTAAGCCGAGTACGCGAAACAATAGCTTCACTTCGTTGAGCTCCAT
GGCGGAGTCAATGGCCCAGGAGGCATCCTTGCAGATGCAGGAGACGCGAG
TGGAGGGAAAGATCGGTCTGGGGCTGTACAAGGAGTATTTGACCTCGGGA
AGCAGCTGGTTCATGATCTTCTTCATGGTCTTCCTATGCCTGGCTACTCA
GATTCTATGCTCGGCAGCGGACTACTTCTTATCGTACTGGGTGGACAAGA
ACGTGGACGGTCAAACAGATATTAACACGGATCCGCAGGATATGTATTAC
TTTGCCGCGCTCAATGTAGCTGTTGTGGTGTTTACCATTGTACGGACCAT
GCTCTTCTACAAAATGGCCATGCGCAGTTCCACGCAGCTGCACAATGCTA
TGTACCAGGGCATTACGAGGGCTGCCATGTATTTCTTCAACACGAATCCA
TCGGGACGCATCCTCAATCGATTCTCAAAGGATCTCGGCCAGCTGGACGA
AGTACTGCCAAGCGTTATGCTGGATGTGGTGCAACTCTTTCTCACGCTAC
TTGGCATCATTGTTGTGATTTGCATAACAAATCCGTACTACCTCATTTTA
ACCTTGGCATTGGCCATAATATTCTACTATATCAGGGAATTTTATCTGAA
GACATCGAGGGATGTGAAAAGATTGGAGGCTGTAGCTAGATCACCTATAT
ACTCCCATCTAAGTGCCACAATTACCGGATTGCCAACGATACGTGCCTTA
GGAGCTCAGAAGGAACTTATTGCTGAGTTCGACAATTTGCAAGACCTGCA
CAGCTCCGGATATTATACCTTCTTGGCGACGAATCGCGCCTTTGGTTATT
ATCTGGACTGCTTTTGCACGTTGTATATTGTGATCATCATCCTGAACTAC
TTTATAAACCCGCCGCAAAGTCCTGGAGAAGTGGGTCTGGCCATTACCCA
GGCAATGGGTATGACCGGAATGGTGCAGTGGGCAATGCGACAGTCGGCCG
AACTGGAGAACACAATGACCGCAGTGGAACGAGTTGTGGAGTACGACGAG
ATCGAACCAGAAGGCGAATTCGATTCACGCGAGGGCAAAAAACCCTCGCC
TAGTTGGCCTGAAAAGGGTGAGATTATCGCGGAGGATCTGTGCCTTCGTT
ACTTCCCGGATCCGCAGGCCAAGTACGTCCTAAAGGCGCTCAATTTCCGT
ATCCGTCCATGCGAAAAGGTGGGCATAGTGGGCCGCACTGGAGCTGGCAA
ATCCTCGCTGATTAACGCACTCTTCCGACTTTCCTACAACGAGGGCATCA
TTACCATCGATGAAAGGGATACGGCTGACATGGGACTCTTTGATCTACGC
AGCAAGATATCCATAATACCGCAGGAACCTGTGCTCTTCTCTGGCTCCAT
GCGGTACAATCTGGATCCCTTTGAGGAGTATAACGATGCAAAGCTGTGGG
ATGCACTGGAGGAGGTGAAACTGAAACCTTTGATTTCCGAACTTCCAAAC
GGACTGCAGAGCAAGATATCCGAGGGTGGCAGTAATTTCAGTGTGGGCCA
ACGGCAGCTAGTGTGCCTGGCCAGGGCTATTCTCCGAGAGAATCGCGTTC
TGGTTATGGATGAGGCAACGGCCAATGTGGATCCGCAAACAGATGCGCTG
ATCCAAGCAACAATAAGGAGCAAATTCCGGGACTGTACAGTGCTTACGAT
AGCCCATCGTTTAAACACGATAATGGATTCGGATCGTGTTCTGGTCATGG
ATGCTGGTCATCTTGTAGAGTTTGGATCTCCGTACGAACTTCTCACCTCC
AGCGAATCGAAGATCTTCCATGGAATGGTAATGGAAACTGGACAAAACAC
ATTCGACAGCCTTCTTAAAGTTGCCGAAAAGGCTCATTTGGAATCAATGA
AACCGAAATCGGAGTAGAAGCTTTCTAGACCAT
BS31328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mrp4-RB | 3951 | CG14709-PB | 1..3951 | 17..3967 | 19755 | 100 | Plus |
| CG4562-RE | 4227 | CG4562-PE | 3313..3985 | 3260..3932 | 995 | 76.5 | Plus |
| CG4562-RC | 4089 | CG4562-PC | 3313..3985 | 3260..3932 | 995 | 76.5 | Plus |
| CG4562-RE | 4227 | CG4562-PE | 1535..1996 | 1488..1949 | 540 | 74.5 | Plus |
| CG4562-RE | 4227 | CG4562-PE | 2854..3176 | 2801..3123 | 325 | 73.4 | Plus |
| CG4562-RE | 4227 | CG4562-PE | 2446..2646 | 2393..2593 | 270 | 75.6 | Plus |
| CG4562-RE | 4227 | CG4562-PE | 529..897 | 521..889 | 255 | 71.3 | Plus |
| CG4562-RE | 4227 | CG4562-PE | 1..122 | 17..138 | 205 | 77.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mrp4-RB | 4726 | CG14709-RB | 508..4460 | 16..3968 | 19765 | 100 | Plus |
| CG4562-RD | 4764 | CG4562-RD | 3732..4409 | 3260..3937 | 1005 | 76.5 | Plus |
| CG4562-RB | 4539 | CG4562-RB | 3507..4184 | 3260..3937 | 1005 | 76.5 | Plus |
| CG4562-RD | 4764 | CG4562-RD | 1922..2383 | 1488..1949 | 540 | 74.5 | Plus |
| CG4562-RD | 4764 | CG4562-RD | 3273..3595 | 2801..3123 | 325 | 73.4 | Plus |
| CG4562-RD | 4764 | CG4562-RD | 2833..3033 | 2393..2593 | 270 | 75.6 | Plus |
| CG4562-RD | 4764 | CG4562-RD | 916..1284 | 521..889 | 255 | 71.3 | Plus |
| CG4562-RD | 4764 | CG4562-RD | 388..509 | 17..138 | 205 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11573929..11575572 | 2289..3932 | 8220 | 100 | Plus |
| 3R | 32079331 | 3R | 11572266..11573863 | 693..2290 | 7990 | 100 | Plus |
| 3R | 32079331 | 3R | 19867574..19868246 | 3932..3260 | 995 | 76.5 | Minus |
| 3R | 32079331 | 3R | 11571614..11571805 | 503..694 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 11571386..11571561 | 328..503 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 9394186..9395027 | 2999..3840 | 820 | 73.2 | Plus |
| 3R | 32079331 | 3R | 11571174..11571322 | 179..327 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 8356136..8356704 | 3840..3272 | 670 | 74.5 | Minus |
| 2L | 23513712 | 2L | 19001683..19002227 | 3263..3807 | 655 | 74.7 | Plus |
| 2L | 23513712 | 2L | 19007438..19007877 | 3392..3831 | 565 | 75.2 | Plus |
| 3R | 32079331 | 3R | 19869708..19870169 | 1949..1488 | 540 | 74.5 | Minus |
| 3R | 32079331 | 3R | 11571026..11571112 | 93..179 | 435 | 100 | Plus |
| 3R | 32079331 | 3R | 11569757..11569834 | 16..93 | 390 | 100 | Plus |
| 2L | 23513712 | 2L | 19005513..19005912 | 1478..1880 | 345 | 73 | Plus |
| 3R | 32079331 | 3R | 19868383..19868705 | 3123..2801 | 325 | 73.4 | Minus |
| 2L | 23513712 | 2L | 8356862..8356977 | 3114..2999 | 310 | 84.5 | Minus |
| 2L | 23513712 | 2L | 19007030..19007130 | 2984..3084 | 310 | 87.1 | Plus |
| 3R | 32079331 | 3R | 19868997..19869197 | 2593..2393 | 270 | 75.6 | Minus |
| 2L | 23513712 | 2L | 20930139..20930430 | 3518..3227 | 260 | 72.6 | Minus |
| 2L | 23513712 | 2L | 8357516..8357654 | 2577..2439 | 245 | 78.4 | Minus |
| 2L | 23513712 | 2L | 20932752..20932816 | 885..821 | 235 | 90.8 | Minus |
| 3R | 32079331 | 3R | 19870807..19870902 | 889..794 | 225 | 82.3 | Minus |
| 3R | 32079331 | 3R | 24537290..24537390 | 3684..3584 | 220 | 81.2 | Minus |
| 2L | 23513712 | 2L | 19004832..19004888 | 818..874 | 210 | 91.2 | Plus |
| 2R | 25286936 | 2R | 9392625..9392737 | 1577..1689 | 205 | 78.8 | Plus |
| 3R | 32079331 | 3R | 11575633..11575671 | 3930..3968 | 195 | 100 | Plus |
| 3R | 32079331 | 3R | 19871420..19871505 | 606..521 | 190 | 81.4 | Minus |
| 3R | 32079331 | 3R | 29167018..29167085 | 822..889 | 190 | 85.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:10:44 has no hits.
BS31328.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:50 Download gff for
BS31328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14709-RB | 509..4459 | 17..3967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:14 Download gff for
BS31328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mrp4-RB | 509..4459 | 17..3967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:48 Download gff for
BS31328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mrp4-RB | 509..4459 | 17..3967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:48 Download gff for
BS31328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11569758..11569834 | 17..93 | 100 | -> | Plus |
| 3R | 11571027..11571112 | 94..179 | 100 | -> | Plus |
| 3R | 11571175..11571322 | 180..327 | 100 | -> | Plus |
| 3R | 11571386..11571561 | 328..503 | 100 | -> | Plus |
| 3R | 11571615..11571805 | 504..694 | 100 | -> | Plus |
| 3R | 11572268..11573862 | 695..2289 | 100 | -> | Plus |
| 3R | 11573930..11575571 | 2290..3931 | 100 | -> | Plus |
| 3R | 11575635..11575670 | 3932..3967 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:14 Download gff for
BS31328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7395480..7395556 | 17..93 | 100 | -> | Plus |
| arm_3R | 7396749..7396834 | 94..179 | 100 | -> | Plus |
| arm_3R | 7396897..7397044 | 180..327 | 100 | -> | Plus |
| arm_3R | 7397108..7397283 | 328..503 | 100 | -> | Plus |
| arm_3R | 7397337..7397527 | 504..694 | 100 | -> | Plus |
| arm_3R | 7397990..7399584 | 695..2289 | 100 | -> | Plus |
| arm_3R | 7399652..7401293 | 2290..3931 | 100 | -> | Plus |
| arm_3R | 7401357..7401392 | 3932..3967 | 100 | | Plus |
BS31328.pep Sequence
Translation from 16 to 3966
> BS31328.pep
MQSMKADELPENPRERSSPLSSLMFCFALPVLFKGRKKTLEQKDLYRALK
EHKSDSLGDRLCAAWDEQVAKNETPRLGRALTKVFGFHLFITGVFLLAQE
FLTKVTQPICLIGVMAYFAGNDPDRSKAQLWAAGLIAGSVFSVCIGHPYM
LGLLHLGMKMRIALSSLIYRKALRLSRTALGDTTVGQVVNLLSNDVGRFD
LVLINVHYLWIAPLELIAVTYLMYLEIGISSMFGVAIMLLFLPFQSYLGK
RTSVLRLRTALRTDERVRMMNEIISGIQVIKMYAWEKPFGKVVEMTRFNE
MLCIKQVNYIRGILISFAMFLSRIFTSSSLIAFVLLGNILNAEKAFFVTA
YYNILRRSVTMFFPQGISEFAELLVSVRRLEAFMHRPETKVRDKSKVKNA
NQKAESPNGDSPKGNGIPENLIEFSQFQARWESHSLEPTLEDINLQLGRR
KLVAVIGPVGAGKSSLIQAILGELPGESGTLRINGSYSYAAQEPWLFTGT
VRQNILFGLDWDKHRYRTVVKKCALERDFELLPFGDKTIVGERGASLSGG
QKARISLARAVYRRADIYLLDDPLSAVDTHVGRHLFDQCMRGYLRSELVI
LVTHQLQFLEQADLIVIMDKGRISAMGTYSSMKRSGLDFAQLLTAPNKDA
EDLDEIDGAGGDGLDLLNVPSLSRRGSKNSKPSTRNNSFTSLSSMAESMA
QEASLQMQETRVEGKIGLGLYKEYLTSGSSWFMIFFMVFLCLATQILCSA
ADYFLSYWVDKNVDGQTDINTDPQDMYYFAALNVAVVVFTIVRTMLFYKM
AMRSSTQLHNAMYQGITRAAMYFFNTNPSGRILNRFSKDLGQLDEVLPSV
MLDVVQLFLTLLGIIVVICITNPYYLILTLALAIIFYYIREFYLKTSRDV
KRLEAVARSPIYSHLSATITGLPTIRALGAQKELIAEFDNLQDLHSSGYY
TFLATNRAFGYYLDCFCTLYIVIIILNYFINPPQSPGEVGLAITQAMGMT
GMVQWAMRQSAELENTMTAVERVVEYDEIEPEGEFDSREGKKPSPSWPEK
GEIIAEDLCLRYFPDPQAKYVLKALNFRIRPCEKVGIVGRTGAGKSSLIN
ALFRLSYNEGIITIDERDTADMGLFDLRSKISIIPQEPVLFSGSMRYNLD
PFEEYNDAKLWDALEEVKLKPLISELPNGLQSKISEGGSNFSVGQRQLVC
LARAILRENRVLVMDEATANVDPQTDALIQATIRSKFRDCTVLTIAHRLN
TIMDSDRVLVMDAGHLVEFGSPYELLTSSESKIFHGMVMETGQNTFDSLL
KVAEKAHLESMKPKSE*
BS31328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mrp4-PB | 1316 | CG14709-PB | 1..1316 | 1..1316 | 6702 | 100 | Plus |
| CG4562-PE | 1408 | CG4562-PE | 1..1331 | 1..1308 | 4513 | 66 | Plus |
| CG4562-PC | 1362 | CG4562-PC | 1..1331 | 1..1308 | 4513 | 66 | Plus |
| CG4562-PA | 1362 | CG4562-PA | 1..1331 | 1..1308 | 4513 | 66 | Plus |
| CG31793-PA | 1307 | CG31793-PA | 1..1300 | 4..1304 | 4143 | 62 | Plus |
