BS31330.complete Sequence
3872 bp assembled on 2012-07-30
GenBank Submission: KX802081
> BS31330.complete
GAAGTTATCAGTCGACATGCTCCGTGAGTGCCTGGCGCTGATCGCCCTCC
TGCAGCTGGGGGGCGTGACGCGGGCCCTGCCCACTATACAGGGCGGTAAT
GCGCGGCAGCAGTTGGACAAGAGTTTCTTCCAGCCGCCGGAGATCGAGCA
GACGATCGACGAGGTGCAAAAGATACTAGCCAACGATCCGGCCTTGCCTA
GGCTGACGCGTGGCGAGATCGAGGAGCTGTACGAAAAAGTAACCCGCGAG
GAATACGAGAAAAGCTTGGAGGCAGGCGACATGAGCCGAGCGGACAGCAT
GCGAGCCCTCATGCTAGTCCTGCCCTTCAACACGGACAACAACACGGAGG
AGAATCTGCAGGAGCTGTACACGCGGCCTCCGGTGACTCGCGTCATCGAC
GCCTACACGCCACCGGATCCGGTGAAGTTTCTAACCGCGGATCCCAGTGC
GCTGCCAAGAAGTACAGTGCCTGGAGGCAATCCTGCGGTGGCAGCCACGA
CCTACAAGCCAGCCTACAGCTTACTGCATGGCCAGGCGAATCCTCTCCAG
CAGCAGTTCAGACCCATGCCGCAGGCCACAACCTACCATCCGCCAGCGCC
GCCGCCGGTGGTTTATCAGGACTTCAAACCAGTCACTGCAGCTTCTCAGC
CTTCAGCTAATCCCGCTGCTGCACCTTCAGCCGCCCGATTCAGCTCCCAC
TACAGTGCAAAGAATGCTCAGTTCCTGAGGAAACCAAAGCCCTCCGAGGG
AGGAGGTGGCTCTCTCAGCAGTACAGTGAAGCCGGTGGCGGACATCCTCG
AAAGCCTGGGCATTGTGTCGGGCGGTAAAAGCGATTCTGCCCACAAGAGG
TATGCGTTGGACGACTATTACCCCGCGGAGAGCGCTCCCCAGCCGTCGGT
GGTAGCGGTGGCGGATCTACGGGGTCTCCATGGGGCTCGAATCCGACCGG
AGGCATACTCAAACTTTAAGCCCCTGAATATTGGCGAAGAGCTGCGCGTG
AAGCCCGAAGTCGAAGGTTACCTGACCCGCTTTGGTATTGTACGGAAGGC
TCCAAAGGCACTAAAGAAGGAGGCAAAGCCCACGGAGGAACCAACTGGTG
CTCACACGGAACTGTCGACGGCGACGGCCCGTTTGCCGCCCACGGGAAAC
GCGGAGTTGGCCAAGCTCTTGGAAAATCTGCAGGAACTTGAGCGCCTTCA
ATCGCAGCCTAAGAGAAAGACTCCAAAGAGCACCACAACCAGCACCACTA
CTACCACAACGAGCACCACCACCACTACCACACCTGCTCCAGTGCCGCTC
ATCACCCACGGGGAACCTCTACTCATTGAGGCCAAGAAGCCGCGCAGGCG
AATCGATCCGAACATAGACATTAACTTTGCCAACGGGGGAAACCAACAAG
CTACACCTACAGGTTCCGATGAGTTGTCCAAGTTGTTGCAAAATCTCCAG
GAACTCGAAAAGCTTAAGATCAATCCAGAAAATGTTATTAAGGCAGCCAG
TCCGGGCGTTCAATCGTTGAGCAGTCGTTTCTCCACCACGAGCACGAGCA
CCAGCACGACGACCACCACCACCACCACCCCCTCGCCTTCGCAGAACGAA
GCACGAGAGCTGCAGCGAATCCTTAAACAGCTCCAGCAGTTGGATCAATC
CAGCAGAACCACAACGAGCACAACCAGCACCACCGCAAAGCCATTGAGAA
ATCAGGCTCTGGGCTTGGGAGTGGGACAAGGCAACTCTCTAGGTGCTGCC
GATCTTCTGCAGCTGCAACGCCTCTTAAGTGACGATCGGGAGTTGGAGAA
GTTATACGAGCAGGCCAGGAACAGCAAAAAGAAACAGCACCCGAAAACCA
CCTCCTCCACCACATCAACCACGAGTACAACCACGACGCCCAGGCCCACG
CCCTCAGTGGATCATGCTCAGTTTGAGGCACTGATTACCCGTGTCCAGCA
GTTGGAGCAACTGCAGCAGCCCACAACGCAGCCTAATTTCCTCACAAGAA
ACGTGGCTGGTTCCAGGCCGGTAATTAGCTTGCCTAGCAACGATTATGCC
CACCTGCAGGAACTATCGCCGACCTCAGCTTCCCTCCTTCCAGGTGGAGG
AACTGTAGAGATCTCCACGGCTGCTTCCACCACCAAGCAGAGACCCTTAA
GCCAATTTGAAAGGACCAATGGGCTGCTTCGGGAAGAGGTGCATCCACAG
GACTACGTGCAGTTGCAAAAGCTGTTGAGCAAAGTCCAGGAGCTAGAGAG
AGTACAACTCCGAACGGAACACGTGACCCATCCCCATTCGCAGCTGGTCA
CCGCGGCCTCGATCCGCAGTCCTAATGTAAAAACTGTCAATGGAGCTCAC
ATTGTCTATGCTCAGCCAGCCAGGGATCAGGTGGTGGAGCTGGAACCAGA
GCTTAAACTAGACTTGCCCGTCTACGAGAAGCCTGTAACCATGGCCACGC
CTTCCCAATCTTCCAGCGAGGAGCTCCGCGAACTGGCCATGAGTCAGCCC
GCCCATCCGCAGCGCGGATCCTCAGCAGACTTTGGTCAGTTCCAGCAGTT
TTTCGGTAGCCTGGAGGACACGGGCGAGCGTCAGAGCTATCAGCACATGC
AGCCCATCTATAAGACAGTGCAGAACCAGCCACCGACCACGCCGGCTGCT
CCTCGTTTCGTGCCCGCAAGGAGGGCTCCCACTACGCCCAGCTCTGGGCC
CCGAAAGGGGGATCTGGAGGAGCTGCAGAAACTGCTCTACAATACCCAAC
AGTTGCAGAAGCTAGGCGTCGCTCTGCCCCACGAGCTGTCGCAACAGCTC
GAAAGCCAGCTGCAGGCTACCTCGTCCTCCACTTCATCCACCACCACCAC
CACGACTAGCACCACTCCGGCTCCCGCTCAAGTGCATGACACCTCCTCGC
CGGCCGTATTTTCGCTCACCACTAGCCGTCCGAGGGTGCGCCCGATTCCG
GAAGCCAAACCCACCACGGAGAGCAGCCTCCAGCTGCCCGTTTTCAGTGC
GACCAAAATTATCGAGGCGGCCATTAAGCGAGCGGCCAACAGGATTGGTG
TAAGCACTGAACTAGCGCCCAAACAGGGACTGCCCAGTGAATTGGCCAAG
GGACTGGGCGTGGGCAGTGGCTTCCGGCGGCGCAGCGATGAGGGCGACGC
AGAAGATTTGAATGAGGGCGACGAGAGGGAGGGTGAGCTCGATGGCGACC
TCATGGCAGAGTTCAGTGAGTTTAATTACCAGCTAGCGAAGCCGGAGCCC
GAGGCACCCAAGGAAAAAAGGGATGACTCCAAAAGCAATCTCAGCGAGCT
GCAGCGCCTGATCAGCAATCTCCAAGAACTGCAACAGCTCAATGTGAGCT
TGGACCAGGTAACCACAGCGACATCAAGTCCAAGGCCCAATCCAGACGCC
GCCTATCTGCAGTCCCTTCAGAGTGGCCAAGATGAGACTCTGAAAGAAAG
GCGTCAGAGCGTGGAAAATGTCACCACCGAGAGTGGCAAGCAGAAAGATG
GCGATGATCCGCCACCGACCACCCAGTCCCCCACCAAGATTAGTCTGAGT
CTGGGCTTAGACGACATCGATGGAGACACCAAAGGAGCAGTTGGAGAGGA
CGACAGCAGCAGCACTAGTACCACTACCACCACCGAGGAGCCCCGGAATG
GATCTCTCGACGACTTGGCAGACTCATTTGGACCTGATCCTGTCAGCGAG
GAGCCACCGCCGCCCAAGAAGAAGAATGGATTTTACTTCCTGGCCGACTG
GAACTCGTTCCTCGAAGTGGGTGACGGCGATGACCAGGTGGTGGTTCGAC
TCAGTCCCAAGATCGGGGATCCGCGCCTATTTCTGCCCGTTAAGATTCCC
TCGTAGAAGCTTTCTAGACCAT
BS31330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11409-RC | 3840 | CG11409-PC | 1..3840 | 17..3856 | 19200 | 100 | Plus |
| CG11409-RB | 3840 | CG11409-PB | 1..3840 | 17..3856 | 19200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11409-RC | 4397 | CG11409-RC | 285..4124 | 17..3856 | 19200 | 100 | Plus |
| CG11409-RB | 4457 | CG11409-RB | 345..4184 | 17..3856 | 19200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1329791..1333437 | 3856..210 | 18235 | 100 | Minus |
| X | 23542271 | X | 1333503..1333696 | 210..17 | 970 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 642..710 | 636..705 | 131 | 67.1 | Plus |
| gtwin | 7411 | gtwin GTWIN 7411bp | 2170..2277 | 3447..3553 | 123 | 58.3 | Plus |
BS31330.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:50 Download gff for
BS31330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 1..3840 | 17..3856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:20 Download gff for
BS31330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 345..4184 | 17..3856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:53 Download gff for
BS31330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 345..4184 | 17..3856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:53 Download gff for
BS31330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1329791..1333436 | 211..3856 | 100 | <- | Minus |
| X | 1333503..1333696 | 17..210 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:20 Download gff for
BS31330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1223824..1227469 | 211..3856 | 100 | <- | Minus |
| arm_X | 1227536..1227729 | 17..210 | 100 | | Minus |
BS31330.pep Sequence
Translation from 16 to 3855
> BS31330.pep
MLRECLALIALLQLGGVTRALPTIQGGNARQQLDKSFFQPPEIEQTIDEV
QKILANDPALPRLTRGEIEELYEKVTREEYEKSLEAGDMSRADSMRALML
VLPFNTDNNTEENLQELYTRPPVTRVIDAYTPPDPVKFLTADPSALPRST
VPGGNPAVAATTYKPAYSLLHGQANPLQQQFRPMPQATTYHPPAPPPVVY
QDFKPVTAASQPSANPAAAPSAARFSSHYSAKNAQFLRKPKPSEGGGGSL
SSTVKPVADILESLGIVSGGKSDSAHKRYALDDYYPAESAPQPSVVAVAD
LRGLHGARIRPEAYSNFKPLNIGEELRVKPEVEGYLTRFGIVRKAPKALK
KEAKPTEEPTGAHTELSTATARLPPTGNAELAKLLENLQELERLQSQPKR
KTPKSTTTSTTTTTTSTTTTTTPAPVPLITHGEPLLIEAKKPRRRIDPNI
DINFANGGNQQATPTGSDELSKLLQNLQELEKLKINPENVIKAASPGVQS
LSSRFSTTSTSTSTTTTTTTTPSPSQNEARELQRILKQLQQLDQSSRTTT
STTSTTAKPLRNQALGLGVGQGNSLGAADLLQLQRLLSDDRELEKLYEQA
RNSKKKQHPKTTSSTTSTTSTTTTPRPTPSVDHAQFEALITRVQQLEQLQ
QPTTQPNFLTRNVAGSRPVISLPSNDYAHLQELSPTSASLLPGGGTVEIS
TAASTTKQRPLSQFERTNGLLREEVHPQDYVQLQKLLSKVQELERVQLRT
EHVTHPHSQLVTAASIRSPNVKTVNGAHIVYAQPARDQVVELEPELKLDL
PVYEKPVTMATPSQSSSEELRELAMSQPAHPQRGSSADFGQFQQFFGSLE
DTGERQSYQHMQPIYKTVQNQPPTTPAAPRFVPARRAPTTPSSGPRKGDL
EELQKLLYNTQQLQKLGVALPHELSQQLESQLQATSSSTSSTTTTTTSTT
PAPAQVHDTSSPAVFSLTTSRPRVRPIPEAKPTTESSLQLPVFSATKIIE
AAIKRAANRIGVSTELAPKQGLPSELAKGLGVGSGFRRRSDEGDAEDLNE
GDEREGELDGDLMAEFSEFNYQLAKPEPEAPKEKRDDSKSNLSELQRLIS
NLQELQQLNVSLDQVTTATSSPRPNPDAAYLQSLQSGQDETLKERRQSVE
NVTTESGKQKDGDDPPPTTQSPTKISLSLGLDDIDGDTKGAVGEDDSSST
STTTTTEEPRNGSLDDLADSFGPDPVSEEPPPPKKKNGFYFLADWNSFLE
VGDGDDQVVVRLSPKIGDPRLFLPVKIPS*
BS31330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11409-PC | 1279 | CG11409-PC | 1..1279 | 1..1279 | 6497 | 100 | Plus |
| CG11409-PB | 1279 | CG11409-PB | 1..1279 | 1..1279 | 6497 | 100 | Plus |
| Mur2B-PB | 1144 | CG14796-PB | 494..1028 | 400..987 | 198 | 21.8 | Plus |
| Mur2B-PC | 1795 | CG14796-PC | 494..1028 | 400..987 | 198 | 21.8 | Plus |
| Mur2B-PA | 1795 | CG14796-PA | 494..1028 | 400..987 | 198 | 21.8 | Plus |
