BS31334.complete Sequence
3575 bp assembled on 2012-07-30
GenBank Submission: KX803356
> BS31334.complete
GAAGTTATCAGTCGACATGGTGATAAGCAAACCCGATGGAACGGCGCCCA
ATGGAGCGGCGGGAGGAGCGGAAGCCGCTGCCCCAACTGGCCTTGATGCC
ACCGGGAACAGTCTGGCGCATCCTTCGGGAATACCGCAGGATCAGATAGA
CAACATCATGAGCGGCATCGCCAACACGGGCAATGTCAAAATGAACAATC
ACCGCAAGAAGTTGCGACAAAGATTTGATATTATTAAGAAACTAGGACAA
GGCACTTACGGCAAGGTGCAGTTAGGTATTAATAAGGAAACCGGCCAGGA
GGTGGCTATCAAAACCATCAAGAAGTGCAAGATCGAGGCCGAGGCGGATT
TGGTGCGCATCCGTCGCGAGGTGCAGATTATGAGCTCAGTGCATCATCCC
AACATCATCCACATCTACGAAGTATTTGAGAATCGTGAGAAAATGGTGCT
AGTCATGGAATTTGCCGCTGGCGGCGAGCTCTACGACTATCTGTCTGAAA
GGAAGGTTCTCACCGAGGAGGAGGCGAGACGCATCTTCCGCCAGGTGGCC
ACCGCCGTCTACTACTGTCACAAGCACAAGATCTGCCATCGCGATCTCAA
GCTGGAGAACATCCTGCTGGACGAGAAGGGCAATGCTAAGATTGCTGATT
TTGGGTTGTCGAATGTGTTTGATGACCAGCGACTGCTGGGCACCTTTTGC
GGTTCCCCACTCTATGCCTCGCCGGAAATTGTGGAAGGCACACCATACCA
GGGACCCGAGGTGGACTGCTGGTCACTGGGCGTGCTGCTCTACACGCTGG
TCTACGGCTCTATGCCCTTCGATGGGTCCAATTTCAAGCGACTGGTGAAG
CAGATCAGCCAGGGTGATTACTACGAGCCAAGGAAACCTTCGCGAGCCTC
TACTCTCATCCGGGACATGCTGACCGTGTGTCCGAGGAAACGGGCCAGTA
TCGAGCAAATCTGCTCGCACTGGTGGGTCAACGAGAACGATAATGTGTCC
TGTCTGGATCTGGCCGAGGATCTGGCCAATCAGACCCCAGTGCGATTGGA
TGTCCTGCTTTCCCTTACGCCAGCCACAATCACCGCGGATCAGTTGGTGG
TGCCATCGGCGGAGGGAGCAGCTGCTGCCAAGGCGGCGGCCAATGAACGC
GTTCCTCGCTCGCATTCGGTGGGCTCGATCCGGGACATGGGACCGCCGAA
CACGGAGGCGGAACGTCGCATCCTGGACATGGTGGCCGCTGGAGGAGAAG
CCGCCTTGATGCCCTCACCCACCAGGACCATAACCCCCGCCCAGAGTCCG
GTGCAGACGAAGAGGAAACTGCAGCCCACTGTTTCTACGGAGAATGCAGC
CGGAACTACAGCCAAAAAGAAGGAGAAGCCGGCCAATAGCTCGTTTGTGA
TCAGCAAGGATGGTGCACCACTGACTGAAGCGCCACCGACCATCATCGAA
CCGCAAGCTACGCTCATGGAGGCGGAGACGATTGCCAATATACCCGAGGA
GGTTCCTGTTCCCAGTTACTCCCAGAAAGACATGCAAGCGGTGGGTGATA
TTTGCGATCTGCTGATGGGCACCGCCACAACTCCAGCCCCTGCACCACCG
GCACCCACACCTGTTGCTCGCCAGCCCACCAGGGGAAAACTGGATGCCGT
TGTTGAAACTCCTGAGGAAAAGGATGCCACCAAAGTGATCAAGAAGTTTG
TGAACAAGCACAAGACCGCGGATCTGGTAAATGCCATCAATGAAAGTGCC
TCCAAGGCCGCAGCGCCGGTGAGCGCAGTGGCCCCTCCACCCTTCGTCCG
CAAGTGCAGCTTGCAGGATGAGTCCACACTGAATAAATTCAATGCGGAGC
GTCGGAAATCGCGAATCCTAGAAACTGCAGAGAAGTTCCAGCCACCGCCA
CCAGTTGCTGCAGCACCTCCCGAAAAACCCAAGAAGCTCAGCATACCGGG
TGTCAGTGTGGGCAGTTTTAAGAAGGAGTTCGAGAAGAAGGCCACCAATC
CACCGGCTGCAGAGGGACCTACGCCCGGTGAATTAAGGGCTCAGGAGCAG
GTTGCAGCAGCTGCAGCGGCCGCCCAGGAAGCCGAAACCTTAAGCACCCC
GCCACCATCGCCAGTGGTGGCCCAATCGCTAGAGGGCAGCGATTCCAAGA
ACTCTGTGGCCTCTATTTCGCTGGACGAGGCTCGCCGCTCCATGGAGAAC
TCCATTGCCTTGCTGCTCCAGGCACAAAACGAGTCCAGCAAGGAGGTGGA
CCAGTTGTGTGCCCAAACGGAGACCATTGGCGTCAGTGAACCGGCTACTC
AGCAGGAGCGCGAGCGTAAGTTGAAGAACGCCCGCGCCATAATCGGAAAT
GCCATACAACCAGCTTCACCGGGTGCAGAAGGACCGCCAACTCCTCCCGG
AGCGGTGAAGACATCGACGGCTTCGATTACCCTGAAATCGGCCACCCTGC
CGCGTCGCAAGATTAACGCCAAGGCGGAGGTTCAGCTGGACATTAAGCCG
CGAATCCCGGAACAAGGAGCCCCACCCCAGCCGGCCATGCGATTCAGCAC
CGAGATGCAACATCCGGTGGCCGATCTGCGCAGTGCCCCGCCCCGCGAGG
GCCCCATCCCCTACAGTCCCATCAAGACAACGCTGCAGGCGAGGGCCACT
AGTCTGGAGCCCAAGGAGCACGTCATCACCATCCAGCGACCGCCCACGCA
GCATGCCTATGGGCGAACCAGTTCCAACACAACCACGCGTTCCGGCTCGC
TGTCACGGCAGTCGACGGTGGAATCCGAGTCTGAGGGGACAACCACGGCC
ACGAACATGTCGCAGGCCACCATTACGAGCACCTCGCAGCCCATCAAGAA
GAGTCCGCGGGAGTTTATCATCCCGATTGCCGTCGAGGGAGGCGGCTTCA
TTACGCCCCGGGAACGCAGCGTGGAGCCATCGGAATCGAGCCACACCACC
AGCAGCCGCTCCACGTTCACCCGCCTGCGTCCTTCCCGTCGCATTGGCTC
ACTGTTAAGCGAGGCAGGCTTCGATGAGGGCTCGCCATTCCAAAAGATGC
GCACCACGTCGATAACCCGGGATGGCGTCAGCGGAGGAGCCGAGGAGGAG
GCGCGCTTCACTCCGCACCGACTCAGAAGCTCAAGACCTGTCAAGAAAAT
TAGTCAAGACAACGATTCGCAAAGCTCCAACGAGGAGGACGATGACGACG
ATGATGGCTTCGAGATACTCACGGCGGAGAATCTGTTCTCGACTTTGCTG
CAGCGGGTGCGGGCCCTGACGAATCGCCTGAATGTCAACAGTGACCTGAC
GGCCGGATTCCCCAGCCATTCTAGTCGCCTGCTCACGGACATTTCGCGGC
AGGCCCAAAGTCACAGTCCATTCTGGAGCCCGGGCAGTCCCTTTGCCAGC
CGCCTGAACAGCAGCAACAGCAGCGGACTGGGAGCTCCGTGGCGGCACAG
CATGTCCCGGGATCTGGGCAGCGACATGGAATCGATGTTCTCGCGCACGG
GGGCCACTCTGCCAAGAGGTGAATATCACAGAATAAAGAGTAAATACCTA
GATCAGTAGAAGCTTTCTAGACCAT
BS31334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43143-RD | 3543 | CG43143-PD | 1..3543 | 17..3559 | 17715 | 100 | Plus |
| CG43143-RE | 7614 | CG43143-PE | 1..3503 | 17..3519 | 17515 | 100 | Plus |
| CG43143-RI | 7671 | CG43143-PI | 1..3383 | 17..3399 | 16915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43143-RD | 5997 | CG43143-RD | 721..4263 | 17..3559 | 17715 | 100 | Plus |
| CG43143-RE | 8836 | CG43143-RE | 233..3735 | 17..3519 | 17515 | 100 | Plus |
| CG43143-RI | 9381 | CG43143-RI | 721..4103 | 17..3399 | 16915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10293193..10294318 | 1238..2363 | 5630 | 100 | Plus |
| 3R | 32079331 | 3R | 10292114..10292713 | 639..1238 | 3000 | 100 | Plus |
| 3R | 32079331 | 3R | 10296731..10297109 | 2361..2739 | 1895 | 100 | Plus |
| 3R | 32079331 | 3R | 10297439..10297697 | 2739..2997 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 10291835..10292054 | 421..640 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 10291247..10291452 | 17..222 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 10291571..10291772 | 221..422 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 10299631..10299793 | 3397..3559 | 815 | 100 | Plus |
| 3R | 32079331 | 3R | 10298448..10298591 | 3256..3399 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 10298243..10298377 | 3124..3258 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 10297768..10297897 | 2997..3126 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:10:21 has no hits.
BS31334.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:48 Download gff for
BS31334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11870-RD | 721..4263 | 17..3559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:08 Download gff for
BS31334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43143-RD | 721..4263 | 17..3559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:40 Download gff for
BS31334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43143-RD | 721..4263 | 17..3559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:40 Download gff for
BS31334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10291247..10291456 | 17..222 | 98 | -> | Plus |
| 3R | 10291573..10291772 | 223..422 | 100 | -> | Plus |
| 3R | 10291837..10292054 | 423..640 | 100 | -> | Plus |
| 3R | 10292116..10292713 | 641..1238 | 100 | -> | Plus |
| 3R | 10293194..10294318 | 1239..2363 | 100 | -> | Plus |
| 3R | 10296734..10297109 | 2364..2739 | 100 | -> | Plus |
| 3R | 10297440..10297697 | 2740..2997 | 100 | -> | Plus |
| 3R | 10297769..10297897 | 2998..3126 | 100 | -> | Plus |
| 3R | 10298246..10298375 | 3127..3256 | 100 | -> | Plus |
| 3R | 10298449..10298591 | 3257..3399 | 100 | -> | Plus |
| 3R | 10299634..10299793 | 3400..3559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:08 Download gff for
BS31334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6123491..6123619 | 2998..3126 | 100 | -> | Plus |
| arm_3R | 6123968..6124097 | 3127..3256 | 100 | -> | Plus |
| arm_3R | 6124171..6124313 | 3257..3399 | 100 | -> | Plus |
| arm_3R | 6125356..6125515 | 3400..3559 | 100 | | Plus |
| arm_3R | 6117559..6117776 | 423..640 | 100 | -> | Plus |
| arm_3R | 6116969..6117178 | 17..222 | 98 | -> | Plus |
| arm_3R | 6117295..6117494 | 223..422 | 100 | -> | Plus |
| arm_3R | 6122456..6122831 | 2364..2739 | 100 | -> | Plus |
| arm_3R | 6117838..6118435 | 641..1238 | 100 | -> | Plus |
| arm_3R | 6118916..6120040 | 1239..2363 | 100 | -> | Plus |
| arm_3R | 6123162..6123419 | 2740..2997 | 100 | -> | Plus |
BS31334.pep Sequence
Translation from 16 to 3558
> BS31334.pep
MVISKPDGTAPNGAAGGAEAAAPTGLDATGNSLAHPSGIPQDQIDNIMSG
IANTGNVKMNNHRKKLRQRFDIIKKLGQGTYGKVQLGINKETGQEVAIKT
IKKCKIEAEADLVRIRREVQIMSSVHHPNIIHIYEVFENREKMVLVMEFA
AGGELYDYLSERKVLTEEEARRIFRQVATAVYYCHKHKICHRDLKLENIL
LDEKGNAKIADFGLSNVFDDQRLLGTFCGSPLYASPEIVEGTPYQGPEVD
CWSLGVLLYTLVYGSMPFDGSNFKRLVKQISQGDYYEPRKPSRASTLIRD
MLTVCPRKRASIEQICSHWWVNENDNVSCLDLAEDLANQTPVRLDVLLSL
TPATITADQLVVPSAEGAAAAKAAANERVPRSHSVGSIRDMGPPNTEAER
RILDMVAAGGEAALMPSPTRTITPAQSPVQTKRKLQPTVSTENAAGTTAK
KKEKPANSSFVISKDGAPLTEAPPTIIEPQATLMEAETIANIPEEVPVPS
YSQKDMQAVGDICDLLMGTATTPAPAPPAPTPVARQPTRGKLDAVVETPE
EKDATKVIKKFVNKHKTADLVNAINESASKAAAPVSAVAPPPFVRKCSLQ
DESTLNKFNAERRKSRILETAEKFQPPPPVAAAPPEKPKKLSIPGVSVGS
FKKEFEKKATNPPAAEGPTPGELRAQEQVAAAAAAAQEAETLSTPPPSPV
VAQSLEGSDSKNSVASISLDEARRSMENSIALLLQAQNESSKEVDQLCAQ
TETIGVSEPATQQERERKLKNARAIIGNAIQPASPGAEGPPTPPGAVKTS
TASITLKSATLPRRKINAKAEVQLDIKPRIPEQGAPPQPAMRFSTEMQHP
VADLRSAPPREGPIPYSPIKTTLQARATSLEPKEHVITIQRPPTQHAYGR
TSSNTTTRSGSLSRQSTVESESEGTTTATNMSQATITSTSQPIKKSPREF
IIPIAVEGGGFITPRERSVEPSESSHTTSSRSTFTRLRPSRRIGSLLSEA
GFDEGSPFQKMRTTSITRDGVSGGAEEEARFTPHRLRSSRPVKKISQDND
SQSSNEEDDDDDDGFEILTAENLFSTLLQRVRALTNRLNVNSDLTAGFPS
HSSRLLTDISRQAQSHSPFWSPGSPFASRLNSSNSSGLGAPWRHSMSRDL
GSDMESMFSRTGATLPRGEYHRIKSKYLDQ*
BS31334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43143-PD | 1180 | CG11870-PD | 1..1180 | 1..1180 | 6014 | 100 | Plus |
| CG43143-PG | 1199 | CG43143-PG | 1..1199 | 1..1180 | 5984 | 98.4 | Plus |
| CG43143-PE | 2537 | CG43143-PE | 1..1175 | 1..1176 | 5954 | 99.6 | Plus |
| CG43143-PI | 2556 | CG43143-PI | 1..1194 | 1..1176 | 5924 | 98 | Plus |
| CG43143-PH | 1551 | CG43143-PH | 1..979 | 1..931 | 3993 | 83.7 | Plus |
