BS31336.complete Sequence
1208 bp assembled on 2012-07-30
GenBank Submission: KX804347
> BS31336.complete
GAAGTTATCAGTCGACATGGAACAAATGTCGGGAGAACTGCACGCTGCCT
CGTTGCTTTACATGCGGCGACTGATGAAGTGTTTGGGAATGCTGCCTTTC
GGTCAGAATCTGTTCTCGAAAGGGTTTTGCTATGTGCTACTCTTTGTGTC
ACTGGGATTTTCGAGCTACTGGCGCTTCAGCTTCGATTATGAATTTGACT
ATGATTTCCTAAACGATCGATTCTCCAGCACCATCGACCTGAGCAACTTT
GTTGCCCTAGTTTTGGGTCATGCTATTATCGTATTGGAGCTATTGTGGGG
AAATTGCAGCAAGGATGTGGATAGGCAACTGCAGGCGATCCATTCCCAAA
TAAAACTGCAACTGGGTACTTCGAATAGCACGGATCGTGTGCGGAGATAC
TGCAATTGGATCTATGGATCCCTAATCATACGATGGCTAATATTTATCGT
GGTGACTATATATAGTAATCGTGCTCTTACCATTAACGCCACCTACTCGG
AATTGGTTTTCCTGGCTCGTTTTTCCGAGTTCACACTGTACTGTGCTGTG
ATTTTGTTTATTTATCAAGAACTTATCGTTGGAGGCTCCAATGTTCTGGA
TGAATTGTACAGAACCCGATATGAGATGTGGTCCATACGCCGTTTATCCC
TGCAGAAATTGGCCAAGTTACAGGCAATCCATAACTCTTTGTGGCAGGCT
ATCCGTTGTCTGGAGTGCTACTTTCAACTGAGCCTGATCACACTGCTCAT
GAAGTTCTTCATCGATACTTCTGCTTTGCCATACTGGCTCTACCTCAGCA
GAGTTGAGCACACAAGGGTGGCTGTGCAGCACTACGTCGCTACGGTTGAG
TGCATCAAACTCTTAGAGATTGTAGTGCCCTGCTATCTCTGCACGCGATG
TGATGCAATGCAGCGAAAGTTCCTATCGATGTTCTACACAGTCACTACCG
ATCGACGTAGTAGTCAACTAAATGCAGCTCTAAGAAGTCTAAACCTTCAG
TTGAGTCAGGAGAAATATAAATTTAGTGCCGGAGGAATGGTGGACATAAA
CACAGAAATGCTGGGAAAGTTCTTTTTTGGAATGATCAGCTATATTGTAA
TCTGCATTCAGTTCAGCATCAACTTCAGGGCCAAAAAAATGAGCAATGAG
CAAATGAGTCAAAACATCACATCCACAAGTGCCCCCATTTAAAAGCTTTC
TAGACCAT
BS31336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr98a-RA | 1176 | CG13976-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr98a-RA | 1919 | CG13976-RA | 280..1456 | 17..1193 | 5885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27488206..27489022 | 17..833 | 4085 | 100 | Plus |
| 3R | 32079331 | 3R | 27489090..27489325 | 834..1069 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 27489380..27489505 | 1068..1193 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:10:27 has no hits.
BS31336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:49 Download gff for
BS31336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr98a-RA | 280..1453 | 17..1190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:10 Download gff for
BS31336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr98a-RA | 280..1453 | 17..1190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:42 Download gff for
BS31336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr98a-RA | 280..1453 | 17..1190 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:42 Download gff for
BS31336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27488206..27489022 | 17..833 | 100 | -> | Plus |
| 3R | 27489090..27489325 | 834..1069 | 100 | -> | Plus |
| 3R | 27489382..27489502 | 1070..1190 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:10 Download gff for
BS31336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23313928..23314744 | 17..833 | 100 | -> | Plus |
| arm_3R | 23314812..23315047 | 834..1069 | 100 | -> | Plus |
| arm_3R | 23315104..23315224 | 1070..1190 | 100 | | Plus |
BS31336.pep Sequence
Translation from 16 to 1191
> BS31336.pep
MEQMSGELHAASLLYMRRLMKCLGMLPFGQNLFSKGFCYVLLFVSLGFSS
YWRFSFDYEFDYDFLNDRFSSTIDLSNFVALVLGHAIIVLELLWGNCSKD
VDRQLQAIHSQIKLQLGTSNSTDRVRRYCNWIYGSLIIRWLIFIVVTIYS
NRALTINATYSELVFLARFSEFTLYCAVILFIYQELIVGGSNVLDELYRT
RYEMWSIRRLSLQKLAKLQAIHNSLWQAIRCLECYFQLSLITLLMKFFID
TSALPYWLYLSRVEHTRVAVQHYVATVECIKLLEIVVPCYLCTRCDAMQR
KFLSMFYTVTTDRRSSQLNAALRSLNLQLSQEKYKFSAGGMVDINTEMLG
KFFFGMISYIVICIQFSINFRAKKMSNEQMSQNITSTSAPI*
BS31336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr98a-PA | 391 | CG13976-PA | 1..391 | 1..391 | 2020 | 100 | Plus |
| Gr98d-PA | 412 | CG31061-PA | 176..405 | 157..387 | 176 | 25.6 | Plus |
| Gr98b-PA | 403 | CG31059-PA | 148..403 | 129..377 | 159 | 22.4 | Plus |
