BS31350.complete Sequence
3710 bp assembled on 2012-07-30
GenBank Submission: KX804949
> BS31350.complete
GAAGTTATCAGTCGACATGAACCACCTGCGGGTGCACAAATTCAAGCTGG
GCGGCAAAGATAATGCCGCCATGGCCGATTTGCCCCAATCGGAAAACACC
ACCAACAATAACAATAATATCGGAAGCAATAATAATCAAAAAGGCGGTGC
AAAAGGATTTCTGGGAAGGATTAAGCGCTACTCAGTGTTGGGAAATAAAC
TGGGACGTCGTAATCTCGGCAGTATGAATTTGAATCCGCCGAATAATGTC
GTTGATAATTCCGTTTCGCCCACTAAACTCCATACTGGAAGCTACAATAT
GACCGGTAGCCATTCCGATGATCATCGCCTGGAAATCGGAGCTCCGATTT
TAATATCGACTACAACATTGGACACCGACCGTTTCGATGTCACGGAGGCG
AGACTCAAACAGATTGGCGGCGGCATAGCCCAGACCTCCAGTATAGTAAG
AACCCTGACGCCCAGGAGTTCGGATGAGGAGGAGTTTGTGGACGCCAGGA
GTAGTCCGCAACAAATGGAAAGGGATGAGGATCTGCAAATCGCTGATGAT
CAGGTCGAAAAGAACGATCGCGATCAGTATGGTCATCAATTTCAGCTTCC
TAAGAAACAACATCGTGAAGAAGAGATGGGGGACTTAAAATATCTAGACG
ATCTGGAGGAACCAGAACAATTTGAGACGCCCAAACACGAGGTGGAGGAA
AAGCTCCTGACTGCCAACCAGGATGTGAAGCGCCCCATAACGCCCATAAC
CATTGCCATAGATCCCCCAATCAGACGACCACGTATTGCCCGCCAGCAAA
GGCAATCGCAATCCGTTCAGAATCTGCATCGCAGCGAACTGAAGGTATAC
CTGCACAAGTCCAACTCCGTGGCGCTGGACATGAATGTCACGGCTCCGGC
AAAGCTGGGCTTGGACTTGAATCTGCCCGAGTTGCCGGAACTCTATGGAG
CCAGCGAGCTCAGTTTGGCGGCCAGTGATAATAAGGAAAATCTGCCAGCG
GTGAAGCCATCCGCTGAGCGATCGCCCATACCAAATGGTGGCTTCATGGC
CCAGCAGCCACATTTCAAGAGCCTAGACTCGTTCCACCTGAACACCCGCT
CCCATTCGAATCAGAGCTCCCAACAGAGTTCCCGCCAAAGCTTGGCCTGC
AGCAGCAGCAATGGGGAATACGACTTTGATCTGAAGTCGGTGAGCTATCA
GAGCCTGAATGCCCAGAATCTGTTCGTTTCGATTGACGAACTGCAGGAGC
TAACGCGTCAGATCAACGAAACGGAGGATTTTGGCAAGGAGATCGATCTG
GAGTACTGCGCGCATCGCGATCAATTGAGACCCAGTGAACGCAGGATCAC
CCTGCTGAAGAACAAAAACCAAACGTTGATCAACTTCAATCACAACAAGG
AGAAGCTGCGTAAGGGCTGGCACGGCATGAAGCACTGGCTGGGCGAGGAG
GGCTCCAAGATTAAGGAGGCAGTGCGTCAACAGACGCCCCTCAAACGTCT
GGCCCAATCACGGAGCAATCTTAACCAGTCAACTGCGGATGCCAGTCGCC
AGTCAATGTCGCCGGAACGCACTCAACGCGATGTAACCGAGAGCTGTGAG
GATGTCACCGAACGCACCGAAATGGAGTCGTCCATGTCGCACCGAAACAG
CGAGGAGGATCTGTCGCCGCATGCCAAGCGGTTCAAGGATGAGGGACAGA
ACGGCTTCGAGGAACTCCGGCGATATGTGAAGCAGGGCGGTGATTTTAGC
AAGGAGCTCATCTTTGTCCTGCAGGAGAGAGCCGATTCGGAGCTGATCTA
CTCCAAGTCGCTATCGAAACTGGCCAACAAGCTGAACAAAGCGGGCAGGG
AAATTCCCGGGAGCGTGGCCGACGCCTGGCGTGGAGTGGCTACGGAGATG
GAGAGCCGCAGCGACATCCATCGCCAGTTGGCAGCCTCGCTAACGGATGA
GCTGGTCAAGCCGCTCAAGATCGTCGTCGAAGGACATCACAAGGCGCGCA
AGGCGGTGGAAAGCAACGTGGACAAGGCGGCGCGAGTACTGGGCGAATGG
CGAGCCAGCGAGGCGAAAGCCAAGAAGGCCTCCCATACGGCGGCGCGCGA
GAACGAGAAGCTGCAGGACGCAATGCTGGACGTGCGCATCCAGAAGTCAC
CATCGATTGCCCTGCTCCACCAGGGACCCAACAAGCAGGCCGCAGAAAAG
GAGCTCAAGTCAGCGGAGAAGGATTGCGTCAAGCTGGATAACAAGCGCAA
GAAGGCCGAGGAGGCGGTGAAGCGTGCGGATGTGGAATACTACACCCTGT
GCGTGCGTTCGGAGCGAGCACGCGTAGACTGGGAGATGGCCGTGCTCCGG
GGAAGTGCCCAACTGCAGAGCAGCGAACAGCAGCGGCTGGGCAATATGCA
CAACTTTGCCCAGCAGTATGCACGCCTCATCTCGGACATGAATCCGATAC
TCGGTGGCCTGAGCACACGCCTGCAGCCGCAACTCGATGCTTGCAATGTG
GCTAAGGATATGCAAGTGGTGCGCCACATCCGCCGCAATTCGGAGGGACC
CAGTGAGCAACTCCTACCGGACTTTTACTGCGAACACACCACGCTGGCCA
TGAATCGGGAGCGTCGCAAGCACGCTCTGATCAAGCTGCTGCAGCTGGTC
AAGACGGATCTGGAGCGGGAGCGACGATCCCGCGACGGATTGAGGGGACT
GTCGCAATCGCTTAACCATCAGGAGCATCAGAACATCACCGATAAGCTGT
ACCACATTCGTTCCATGCTGACCTATTTGGAGGGCGCCCGTCTCAAGCTG
CACTCTGCCCTCTTGGAGCTGGACCACAAGCCCAGAGCCACTCACCCACT
GGCCCAGCACATTCATATCACCCGTGACCGCACTGGTTTGCAGCAGAGCA
TCCTGAAGGTGCCCAACTGGCTGAAGAACAACGACAAGTCGCAGACGCAG
CAATCGACCAGTATGCTGGCCCACGACATCACCGACATAACCACTAACCA
CGAGGATGAGCTTCCCGACGAGAACTGCTCCCACCTGCACAGCAGTAGCC
ATAGCAACAATAATAGCAACGGCTCCTGCACAGATGTCAGTTCGGTGGTG
AAGCCTTTTAACCGAAGCAAAAGCAACATCGAGACCAATTTCACCAGTCA
ACCAAAGATAATCTCGACGACAAATGCCGCGATTGCCGTGTCCGTTAAGT
CCAAAACCCTGGCCAATCTGCAGGATGGCCATCACAATAACCAACAGCAC
CATCATCATCATCATAATCATCACAGCGATCGCGGCCAGGCGGATGGTGG
ATCCAATCAGCAGGACTCTGATTTCGATGAGTTCAGCTCGCAGGACGAGG
ACGACGAGCCGCAGCAGCCGCAGCAACAACCGCAGCCGTTGCAATCGCAG
CAGCAGCAACAGCAGCCGTTGCTGCAAAATCCAACCATCAATGGCCAAGT
GCAGACGCAGCATTTCTATCAGAATGCGCAGGAACTGCAGAAGGGCCAAA
AGAACGGATCCGTTCCGATACTGGGACGCTGCAAGGCACTGTATAGCTAC
ACCCCGAAGCTCTACGACGAGCTGGAACTGAGTCCCGGCGACATCATCGA
GGTGCATGCCAAACAGGACGACGGCTGGTGGCTGGGCGCCCTGCGCAATC
ACATCGGCATCTTTCCGGCCACCTATGTGGAGGAGTGCGCCTAGAAGCTT
TCTAGACCAT
BS31350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RG | 3678 | CG42388-PG | 1..3678 | 17..3694 | 18390 | 100 | Plus |
| CG42388-RE | 3678 | CG42388-PE | 1..3678 | 17..3694 | 18390 | 100 | Plus |
| CG42388-RH | 3993 | CG42388-PH | 316..3993 | 17..3694 | 18390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RG | 5133 | CG42388-RG | 158..3835 | 17..3694 | 18390 | 100 | Plus |
| CG42388-RE | 3916 | CG42388-RE | 197..3874 | 17..3694 | 18390 | 100 | Plus |
| CG42388-RH | 5956 | CG42388-RH | 981..4658 | 17..3694 | 18390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9049259..9050941 | 17..1699 | 8400 | 99.9 | Plus |
| X | 23542271 | X | 9052450..9053277 | 2867..3694 | 4140 | 100 | Plus |
| X | 23542271 | X | 9051467..9052217 | 2005..2755 | 3755 | 100 | Plus |
| X | 23542271 | X | 9051183..9051412 | 1778..2007 | 1150 | 100 | Plus |
| X | 23542271 | X | 9052278..9052388 | 2756..2866 | 555 | 100 | Plus |
| X | 23542271 | X | 9051035..9051122 | 1692..1779 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:11:44 has no hits.
BS31350.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:52 Download gff for
BS31350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RG | 158..3835 | 17..3694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:35 Download gff for
BS31350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RH | 981..4658 | 17..3694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:15 Download gff for
BS31350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RH | 981..4658 | 17..3694 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:15 Download gff for
BS31350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9052278..9052388 | 2756..2866 | 100 | -> | Plus |
| X | 9049259..9050935 | 17..1693 | 100 | -> | Plus |
| X | 9051037..9051122 | 1694..1779 | 100 | -> | Plus |
| X | 9051185..9051410 | 1780..2005 | 100 | -> | Plus |
| X | 9051468..9052217 | 2006..2755 | 100 | -> | Plus |
| X | 9052450..9053277 | 2867..3694 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:35 Download gff for
BS31350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8943292..8944968 | 17..1693 | 100 | -> | Plus |
| arm_X | 8945070..8945155 | 1694..1779 | 100 | -> | Plus |
| arm_X | 8945218..8945443 | 1780..2005 | 100 | -> | Plus |
| arm_X | 8945501..8946250 | 2006..2755 | 100 | -> | Plus |
| arm_X | 8946311..8946421 | 2756..2866 | 100 | -> | Plus |
| arm_X | 8946483..8947310 | 2867..3694 | 100 | | Plus |
BS31350.pep Sequence
Translation from 16 to 3693
> BS31350.pep
MNHLRVHKFKLGGKDNAAMADLPQSENTTNNNNNIGSNNNQKGGAKGFLG
RIKRYSVLGNKLGRRNLGSMNLNPPNNVVDNSVSPTKLHTGSYNMTGSHS
DDHRLEIGAPILISTTTLDTDRFDVTEARLKQIGGGIAQTSSIVRTLTPR
SSDEEEFVDARSSPQQMERDEDLQIADDQVEKNDRDQYGHQFQLPKKQHR
EEEMGDLKYLDDLEEPEQFETPKHEVEEKLLTANQDVKRPITPITIAIDP
PIRRPRIARQQRQSQSVQNLHRSELKVYLHKSNSVALDMNVTAPAKLGLD
LNLPELPELYGASELSLAASDNKENLPAVKPSAERSPIPNGGFMAQQPHF
KSLDSFHLNTRSHSNQSSQQSSRQSLACSSSNGEYDFDLKSVSYQSLNAQ
NLFVSIDELQELTRQINETEDFGKEIDLEYCAHRDQLRPSERRITLLKNK
NQTLINFNHNKEKLRKGWHGMKHWLGEEGSKIKEAVRQQTPLKRLAQSRS
NLNQSTADASRQSMSPERTQRDVTESCEDVTERTEMESSMSHRNSEEDLS
PHAKRFKDEGQNGFEELRRYVKQGGDFSKELIFVLQERADSELIYSKSLS
KLANKLNKAGREIPGSVADAWRGVATEMESRSDIHRQLAASLTDELVKPL
KIVVEGHHKARKAVESNVDKAARVLGEWRASEAKAKKASHTAARENEKLQ
DAMLDVRIQKSPSIALLHQGPNKQAAEKELKSAEKDCVKLDNKRKKAEEA
VKRADVEYYTLCVRSERARVDWEMAVLRGSAQLQSSEQQRLGNMHNFAQQ
YARLISDMNPILGGLSTRLQPQLDACNVAKDMQVVRHIRRNSEGPSEQLL
PDFYCEHTTLAMNRERRKHALIKLLQLVKTDLERERRSRDGLRGLSQSLN
HQEHQNITDKLYHIRSMLTYLEGARLKLHSALLELDHKPRATHPLAQHIH
ITRDRTGLQQSILKVPNWLKNNDKSQTQQSTSMLAHDITDITTNHEDELP
DENCSHLHSSSHSNNNSNGSCTDVSSVVKPFNRSKSNIETNFTSQPKIIS
TTNAAIAVSVKSKTLANLQDGHHNNQQHHHHHHNHHSDRGQADGGSNQQD
SDFDEFSSQDEDDEPQQPQQQPQPLQSQQQQQQPLLQNPTINGQVQTQHF
YQNAQELQKGQKNGSVPILGRCKALYSYTPKLYDELELSPGDIIEVHAKQ
DDGWWLGALRNHIGIFPATYVEECA*
BS31350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-PG | 1225 | CG42388-PG | 1..1225 | 1..1225 | 6353 | 100 | Plus |
| CG42388-PE | 1225 | CG42388-PE | 1..1225 | 1..1225 | 6353 | 100 | Plus |
| CG42388-PH | 1330 | CG42388-PH | 106..1330 | 1..1225 | 6353 | 100 | Plus |
| CG42388-PC | 768 | CG42388-PC | 31..768 | 496..1225 | 3479 | 92 | Plus |
| CG42388-PD | 675 | CG42388-PD | 3..675 | 555..1225 | 3468 | 99.3 | Plus |
