BS31353.complete Sequence
2177 bp assembled on 2012-07-30
GenBank Submission: KX803909
> BS31353.complete
GAAGTTATCAGTCGACATGCAGTGGCTTACACTTATTTTGGTGGGGCTGT
TTGCCTCGTTCTTATCAATATCGATGTGCGTGGCTGTGCAGCCGCCCGAT
GATGGAAAATTGCGTGTTTGTGTGGTGGAATCGCGTGGCGTTTATCGGAA
AACCCCCAAGTTCTGTCCGCTGCTGGAGGCGAAGAGCAACATCGAGTGCG
TCATCGGCGTGGATCGATTGGATTGCGTGAGGCGTATCCACAAGGGCACC
GCCCACTTTGGAGTGCTCACCTCGGAGGATCTGGTGGCCGCACGCTGGGC
CAGCGTTGAGATCCTGGTGGCCAGCGAGTTGCGCTCCCATGAGTCGCACT
TTGAGTACGAAATTGTGGCGGTGGTGGACAACCACGCCAATATCCATACT
GTTCATGATCTTCGAGGTGCAAGGCTGTGCCATCCTGGCTACGGTCTGGG
CAATCACTGGACGGAGGTCCTGGCTAATTACTTTGAAGCTGCCATGGTCT
CGAAGACTTGTGATCCCGAAATGACCGTCACGGAGGATCGGATAGCATCC
ACAGCCAAGTACTTTGGTCCCAGTTGCAAGGCTGGTCCTTGGGTGCCCGA
TCCCAAGCAGGATCGCATCCTAAAGAACCGATATCCCTCGCTGTGCGAGA
TGTGCTACGAACCGGATAGCTGTGACCAGACCGACAAGCATTGGGGACGC
CGCGGAGCTCTCTATTGCCTGACCAGTGGTGGCGGGAATGTGGCCTGGGC
TCGTCTGGATGATGTGCGCAGTCATTTTGGTTTCTCTGGCATTCCGGCCC
AGTCGAATCCCTCGGACTTCAGCTATCTCTGCCCGGATGGTCATCTGCAG
CCATTGAACGCCAGTCAACCATGTGTCTGGGTGGCCAAGCCGTGGCCCGT
GGTGGCTGCCCGTCGCAGCCATGCCGCTCAAGTGCAGCGTCTCGTCACTG
GACTCAATCATGATGAGCCAGATAGTTGGCAGAATGCGCTGCTTAGCCTG
CTGGAGACATATCACGTTTTCACTGTGCCACTGGATAATGTGATAGCTAT
TGATGACTATCTGGACCAGGCCACCGCATTCCAGTCCGCCTACAGCTTCC
CGGAATGCAATCCACCGCGTTCCATTGTATTCTGCACCACGTCCATCATC
CAGCACATCAAGTGCTCCTGGCTGCAGGAGGCTTCTCAAGTTTATGGTGT
GCAACCGAACATTCAGTGCGTCCGCACCATGGATGAGCAACAGTGCCTGG
ATAATACCAAGTTCAAGGAGACAGATGTGGTGTTGGTGGATCAGGAAATG
CGCGTGAAAGCTCAGCGGGATTACAATCTAGTGCCATTGCTATACGAGTT
CGCAGCGGATATGCATGATCGGTATGTGACTATTGCACTCGTACACAAGG
ATGCCAAGTTCGAGAGCTTTAGGGATCTCAAAGGAGCCAGAGCCTGCTTG
CCATCCTTCGAGGGAGCTGCGCATTTGTCCGTTCAGGAGACTATTGTGAA
TGCGACTGGCAAGGTGCAATCGCTGCACTCCTACTTCCACCGCGACTCCT
GTTTGTGGAATCTACAGAGCGGACGCAAGTGTCCTCTTCACTACCAGGGC
GACGAAGGTGCTCTGCGTTGCCTTTCCGAGGGCGCCGATGTGGCCTTCCT
CAGCTCGGATGTGTACAAGAAGTATGTCGTCGGCAATCTCACCTCAAATT
GGTTGACTCCTGGAAATCACAAGGATTTCCGGGTGTTGTGCCCATACGGT
GGCATTGAGAAGCGCTCCAACTTCGAGTACTGCTACCTGCATTGGACCAC
CCGTGGCCACCTGATGACGCACAACTCTTCGCTGACGCGACGCAATGAGA
TATATAACTCTTTGCGCGATATGGATCAGTTGTTTGGTAGAAAGTACAAG
AGTGAGACGCGTCCATTTACCCTATACGGCATCTTCGATAAAAGGAACAA
TGTGTTGTTCCGTGACGACACCGATGGCCTACTGGGCCTCCAGGAGCTGC
ACCGCGACAATGCCAAGCGGGTGATGGAGCACATCTACGATCGGTATGCC
AATACCCAGTACTACAGGAATTTCGACGAGAGTGGAGCCATGAAATCCAG
TCATAACTTATGGATATTGCTTGTCTGCTTATTATTTGTAGTGGGTCAGC
CGTTTGGCTAGAAGCTTTCTAGACCAT
BS31353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf3-RA | 2145 | CG3666-PA | 1..2145 | 17..2161 | 10725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf3-RA | 2377 | CG3666-RA | 143..2288 | 17..2162 | 10730 | 100 | Plus |
| CG15706-RF | 2419 | CG15706-RF | 394..487 | 110..17 | 470 | 100 | Minus |
| CG15706-RD | 2578 | CG15706-RD | 642..721 | 110..31 | 400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16228400..16229780 | 782..2162 | 6905 | 100 | Plus |
| 2R | 25286936 | 2R | 16227592..16227959 | 111..478 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 16228028..16228330 | 479..781 | 1515 | 100 | Plus |
| 2R | 25286936 | 2R | 16226643..16226736 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:11:49 has no hits.
BS31353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:53 Download gff for
BS31353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf3-RA | 118..2262 | 17..2161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:37 Download gff for
BS31353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf3-RA | 143..2287 | 17..2161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:17 Download gff for
BS31353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf3-RA | 143..2287 | 17..2161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:17 Download gff for
BS31353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16226643..16226736 | 17..110 | 100 | -> | Plus |
| 2R | 16227592..16227959 | 111..478 | 100 | -> | Plus |
| 2R | 16228028..16228330 | 479..781 | 100 | -> | Plus |
| 2R | 16228400..16229779 | 782..2161 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:37 Download gff for
BS31353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12114148..12114241 | 17..110 | 100 | -> | Plus |
| arm_2R | 12115097..12115464 | 111..478 | 100 | -> | Plus |
| arm_2R | 12115533..12115835 | 479..781 | 100 | -> | Plus |
| arm_2R | 12115905..12117284 | 782..2161 | 100 | | Plus |
BS31353.pep Sequence
Translation from 16 to 2160
> BS31353.pep
MQWLTLILVGLFASFLSISMCVAVQPPDDGKLRVCVVESRGVYRKTPKFC
PLLEAKSNIECVIGVDRLDCVRRIHKGTAHFGVLTSEDLVAARWASVEIL
VASELRSHESHFEYEIVAVVDNHANIHTVHDLRGARLCHPGYGLGNHWTE
VLANYFEAAMVSKTCDPEMTVTEDRIASTAKYFGPSCKAGPWVPDPKQDR
ILKNRYPSLCEMCYEPDSCDQTDKHWGRRGALYCLTSGGGNVAWARLDDV
RSHFGFSGIPAQSNPSDFSYLCPDGHLQPLNASQPCVWVAKPWPVVAARR
SHAAQVQRLVTGLNHDEPDSWQNALLSLLETYHVFTVPLDNVIAIDDYLD
QATAFQSAYSFPECNPPRSIVFCTTSIIQHIKCSWLQEASQVYGVQPNIQ
CVRTMDEQQCLDNTKFKETDVVLVDQEMRVKAQRDYNLVPLLYEFAADMH
DRYVTIALVHKDAKFESFRDLKGARACLPSFEGAAHLSVQETIVNATGKV
QSLHSYFHRDSCLWNLQSGRKCPLHYQGDEGALRCLSEGADVAFLSSDVY
KKYVVGNLTSNWLTPGNHKDFRVLCPYGGIEKRSNFEYCYLHWTTRGHLM
THNSSLTRRNEIYNSLRDMDQLFGRKYKSETRPFTLYGIFDKRNNVLFRD
DTDGLLGLQELHRDNAKRVMEHIYDRYANTQYYRNFDESGAMKSSHNLWI
LLVCLLFVVGQPFG*
BS31353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf3-PA | 714 | CG3666-PA | 1..714 | 1..714 | 3868 | 100 | Plus |
| Tsf1-PC | 641 | CG6186-PC | 55..454 | 54..444 | 450 | 28.1 | Plus |
| Tsf1-PA | 641 | CG6186-PA | 55..454 | 54..444 | 450 | 28.1 | Plus |
