Clone BS31355 Report

Search the DGRC for BS31355

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:313
Well:55
Vector:pDNR-Dual
Associated Gene/Transcripte(y)3-RA
Protein status:BS31355.pep: full length peptide match
Sequenced Size:6053

Clone Sequence Records

BS31355.complete Sequence

6053 bp assembled on 2012-07-27

GenBank Submission: KX801802

> BS31355.complete
GAAGTTATCAGTCGACATGAATGATTTACGTCAGCAGCAGATGGTAGCAG
CGACATCGTCATCAGGATCGGAATCGGGAACAGCGGTAGAATCGGCAGCC
GCCACGTCCACAGCAGGATCAGCCGGAGCAGCAGGTCGCCCCCAGTCTAA
CTGTAGCGCTAATAGCAACGCCAAGTCAGTGGCAGCGAGCAGCACGAGCG
AGGAGGAGCAGCGAGTTAGCTCCACGTCGTCGCCAGCCCAGCGGGATCAG
CAGCTGAATGCAGATCGGGACCGGGAACAGGAGCCAGAGCCACAGCAGCA
GCAGCAGCGGGAGGAGGCACTGCAGCACCAGCATAATCAGCCCGGCCATA
TAACCAGCACCACAGCGTCGCCTCCGCCGACGCTGCCACCGCCGACGACG
CCGTGCGACGATGCCCCAAGCACAACTGGAGCATCTGCATCGGCCAGCTC
AGCATCCGGAGAAGCACCATCAGCAGCATCAGCAGCGGGAGCAGCAGGTG
GACCGATGGCCGCTACGGCGCTTGAGGTAGAGAGCGAGGAGCGGGATGGA
CATAAGATCATCCTGAAGCTCTCCAAGCACGCCAATCCCAACTCAAACGC
AAATGAATCTCAGCCGGGCGGAGATGAGAGGCGCGTGGAGCCCCTGCGCA
TTCAGCTGCCCTGCGGCGGAGCGGAAGGAGGCTTGGTTGCGAAGCAGCAA
GATGCCTTCGATGCGGACGCCTCTTCCTGCTCCTCGTCGTGCGCCGAGGA
CGAGGTGGCTACCACCCTCGGCCAACAACTACGAAACACCCCGCACATTG
TGCCAAAGCTGACCATCCGCGCCGCGAACGAGAGGCGCGTAGGCAGCGTG
GTGCCTAAGCTGACCATCAAGTTGCCTGAGAATCCGGCTGCTTCCGGCTC
CAACTCCAACTCTGGATCGTGCTCAGCAGCTGTGAGTGGCGCCCAGTCAG
CTATGCCCGCCAAGAACGATGCCCACCTGTCCAGCCTCTCGCCCGCATCC
GCCTCGTCTTCATCTGCCTCGTCCTCCTCCTCATCGTCGTCGTCGTCCTC
ACTGGCGGAGATGCAGACGGTGCCCAAGCTGATGATCAAGACAACGCTAG
CCGGTAGTAGCTGCATCAGCAGCAGTGAGGAGCTTCCGCAGCAGCAGCAG
CAGATACCAAAGTTAACAATCAAGACAGGTGGCGGCGGTCAGGAGCACGT
GCACACGGTCATAATGACGCACGACCTAAACAACGCCCAGAGCATCCCCA
AACTCACCATTAAAACCAAATCCATAGAGATGATCGAGGACGAACAGGCG
GCTAAGCTGGAGCAGCAATTGCAGCCGCTGCCCAAGCTGACCATCAAGAA
CTTATGCTCACCGAAGCACAAGGTGCGTGCAGTGCTCGAGGAGAAGCCAC
CAACGGCGGCCTCCAAGCTGGCTATCCCAAAACCCACGCCCAATCCCACG
CCGGCTCCCATGACGAATGGCGGCGAGTCGAACAGCAGTAGTCAGGAATT
CTGCGGCTTCTCCGACCCAGACGCAGATATAGCTGCGCCAGCCTCGGACG
ACGTTCGCCGCAATTCGGACGACATGGTGATCGACGATTCGCTCTCCAAG
GAGCACGATCCCAAGATTTTTCACAATCTACCGCCCATGCCCGCCAGCAA
CGGCATAGCCAGCGGTGGGAGTAAGGCCAGTAAAGCCAGCAAGTCTGCCC
AATCCCAGCACAACGTTGTGGACATGGTGGACCTGACCTCGTCACCGTCG
CCGGGCTCTTCGCCAACGCATGTGCCTAACAACTTCACGGGACGCATTTC
GCCGAAAGGGTTGCTCATCGACTGCCTGCGGATGCAAACTGCGATCGGCT
GTTATGTGCCCGAGGAGGCCGACAGTCGCGTTAGGCCAGCTGCGTCGCCC
AATTCGAACATATTGCTTAGCCAGCTGACGGCACCGGCTAAAAGCTTCAC
AACGACCACGCCTAAAAGCAAATCCAGCAAGTATCCCCAGCTAACGGAGC
GCCTGATGGCGAATGGAAGCGGTACCGGTGGGGGATCTGTTATTGCTGCA
GAAAGCGAGGCAGTCGTTGGTCCCTTGCCCGCCGCGAATCCCGCCCAATC
CATAATCGAGTCCATTGAAATCCTGGACACGCCTGATGGCAGCCCGAGGG
TAGCCTACATGGACGAGGATTCTAACCCGATGCTCAACAAACATCTCCAA
ACTATTCACAAGCTCGCAATGGATCACGGAGTGGAACAGCGTATGGATAC
CCAGGACAACAACAACGAGAACCACTTGAAACGCACTAACAGCGAGGGAA
ACGAATCTCCCAGCAGTAGACTCCCTCCCAGCAAACAGCGACGTCTGGAC
AACGACGAGAACGACCAGCAGACGCAGAATTGCCACGATCCCGCCAGAAA
GTGCAGTGAATCACTGCAGGCGCTTCCGCCGTCACATCGCTCGCGCAAGC
AGAAGCACGAGCGAATCCTGAACACAGATCTGGAGGGTTCGCTTTTTCCA
CCCACCCAACAGCAGTCGATTTCAACGCCGGATCAAAATGGAGCCTTGTC
CTCGGAGGTCGAAGGCGAGGACGCAAAGGCGCAAGATCCGCTAGAACCGG
CGACGCCTCAGCCCCCACCGGTAGCGACGCCGGCAGGAACGGGCAAGAAG
CGTGGGCGGCCGAAGCGTATCCAAAACCAGAGCTCGCCGGATGGTGGAGG
TGCAGTTACTCCCAAACCCGGCACTCCACAGGAGGAGGCCAACAGCGCTG
TCAAGTCGCGTCGCGTACAACTGCTGCGCAAGCGACTGGCCATCGACATG
GTGAGCGTGGGCCAAGAGCAGGCGGACATGAAAGCTAAGGAAAAGGAGTC
GTCTGTGGGCGTGCCAAATGCAAGAGTTGAAGACGGGCTTGCCGAAACTC
TGGAATCTCCAAAGACTCGCGACCATCGCCCCCTGAGAGCCACGCGCCGC
ACCACGACCAGCACAAACACCAACCTGCAGCCCACGCCCAAGTCCACAAG
GAAGCGCCAGAGCAAGGCCAGTGTCCAACAAAGCCAGTTGCCGCCGCCGA
CGATGGCTCAGTTCGGTAGTTCGGAGTCCGAGTCCAACAACAACAATAAT
AGCAGCATATCCTTTGCCCTGAGCGCGCAGATCGACCTCACAATGTGCTC
GTCCAGTTCGTCGACCTCCTCTGGCGCTGCCGCCAACCAGCAGGTGATCG
GTGGAAGTGGCAGCAGCTCGATGCTACCTCCGACGACGATTCTGTCTTCT
TCGGATCCGCTGCCCGATGTCATCTTCCAGCCAAATGACTTCTCCTCTAT
CATGGCCACCCAGCAGCTGCGCTCCTCGCGCCCCTCAAGCATCAGCTGTG
GCAGTACCGGCGGTAGCCAGCCGGACTGTCACGACGAGGACAACTACACC
AGCGCGCTGGACAATTCCGGAGACGAAACTGCGTTGCCTATGCCCCCCAC
GCGGGGACGTGGTCGTGGCCGGCGATCCAGGGGAGGCCGCGGTAGAGGAT
CTTCTTCGGTGGATCGGGCTGTCAGCGTCGGAGGCACAGCCTCCACAACG
CCCGCCACGCAGCCTAGGGCCCCGCGAATGAGCCGAGGAGCAAGTGCCGT
AGCAAAGGCCATCGCCATGAGTCGACCACGATGCGTGGGCGGCCTCAAGC
ACCAGCCCGATCCCGAGAGACTTAAAGGCTTGTTCAGTCCGTCGCCGCAA
GTGTTTGAGGAGGACACGCGTATGAGCGCCGATCTTAGCAACAGCAATCA
GTCGATGGCCAGCCTGATGGAACCCCCGCTAACGCCACAGAAGCAACCCG
ACTTCCTCAACAACGAGGAGTCACAGTCGTCCATGGTGAGCAATGTGAGC
ATGATGGACTCCAACCAGGGTCAGTCCGCCGACGCGATTCTGGGTTCTGC
TCTCAAACGTCCAAAGAAGAAGAAGATGGAAACTTGCGTGGCCGAAGACA
CCGACTACAGCGCCTCCAGCATCGCCGAGTACGACTGGCCACCGCCTAAA
GGTTGCTGCCCATCAAAGAATCGGGACACCTTCATGATTCAAGAGCAGGT
GGCGCTCTATCTGGGCATTACCAGCTTTAAGCGCAAGTACCCGGATCTGC
CACGCCGATCGGTCGACATGGAGGAGCGCAATTGGCTGCAGGAGAAGGGG
CTGGTTAGCGAGAAGTTGTGCGACCTGGGCATCACCGCTGTGTGGGCCTC
CGACATATTGGACATCATGTACGCGGACTTTTTCGACAAGTACGAAGAGT
ACAAGGAGTACATTCGCAGAAAGCATTTGCGCGAGATCGAGGCTAAGCAG
AAGGCCCTAGGACTCACAGTCGGGGCCGGACGAGGTCTGCAAGCTCGCGA
CCGTGCCATGCTTTCGGCCACCAAGTGGAACGCTTACTTCAACAAGTCCC
GTAAGGATGAGCGCCAGTCCTGCATGGACCTGCAGACCTTCACGATAAAT
CAGCCGCAGCCAAGGACCGCGCCCACCTGTACACGCCTAGAGCGCTCCAC
TTCGGATTTGATACGGGCAGTGGCAGAAGAGGCGAATATCCCGGCACCGC
CTAATCTCCTGCCACCCCGCGACTATGACGAGGCCTTCCGCAACTCAGAC
TACGCTTATCCACTCACGGTGGTACCGGACCAGTTCTCAATGGCCTACCG
CCAGTTTGAGCCCGCCGAGCTCAGAGCCTACCCACTGGACACGGCGCTGG
ACAAGCCGCCGACCGATCTGATGGCTCAGCTGCTACAGGCAAAATCCGAA
GCTGTAGGCAGCGATGAAATCAAAACGTCCGCCCCGGCCCCCAAGGATCT
GGGGCAAGAGCAGTCCGCCATCAAATCCGTAACGGTAACGGCGCCCGTCC
GACGCAGCAGAAGGTCCACACGCCAGCAGACGGACAAGGTTCGCACGGCT
AGCAGCTCCAGCACGTCCTCCGCTCAATCGGTCTCATCCGCGTCCAGCGG
CAACGGGAGCAGCAGTGATACGGAAAGCGGCGATGAAAGCGACTTTAGCA
GCACATCGAGCTGCAGCAGTTCGACGGGTGCCTCAAGTGGAGCAGGCAGC
GAGGACGAGGATGGGAACGAGTGCTCATCGTCGGTCAGGCTGTCCACCTG
CGGCGTCTGTCTGCGCAGTCAGCATCGCAATGCTAGGGACATGCCGGAGG
CTTTCATCCGCTGTTACACATGCCGAAAGCGCGTCCATCCCAGCTGCGTT
GATATGCCACCGCGCATGGTGGGTCGCGTGAGGAACTACAATTGGCAGTG
CGCCGGGTGCAAATGCTGCATCAAGTGCCGTAGCAGCCAACGTCCAGGAA
AGATGCTCTATTGCGAGCAGTGCGACCGAGGCTACCACATCTACTGCTTG
GGCCTCAGGACAGTCCCAGATGGGCGCTGGAGCTGTGAGCGCTGCTGTTT
CTGCATGCGATGCGGGGCCACCAAGCCGGAGGGTCTGCCCCAGGTGGCCG
CTCTGTCCCAGGCGTCCGGAGGACCGTCGGCCAACGGGGATCGCTCAAAG
GCAGCGCGCAATAAGCGCTTGAAATGGGTGCACGAGTACCGCATCGATCA
TGTGACGAAGATCCGGGAGCACGCCGCCATGTTCTGCGTACCATGTGCGC
GAAACAAGCCCGCCAAGCGGCAGTCGGCGGCGGGTGCGGCCGGTGCGGCA
GCAGTTACTCCTGTCTTGGAGGCCACTTCCGCGCAAACGGATGACAGTCC
GATGCCCAGTCCCGGCCTGACAACCAACGGAGGACGCGCCCTTTCGCCAA
CGGCGGCACTGAGTCCAAAGGCAGCTGTGCCCGTGGCATCGCTGCCGCCC
GTTCTTGAAGCGACGACGGTGACCACAAATATTGCGGGAACGATAGGCAG
ACGGCAGGCGGGTAATGCTGTCAATATTACAACGATGCAGTGCAGCAGCA
GCAGCAGCAGCAACTTCAGCGGGAACGGAGTCACCGAGGACGCGGCGAAT
GTCACTGCAACGGGAACGGCTACGGCGGCCGCAGGAGCACCCGCTGCCAC
TCCAATAGGCATAGCTCCGCCGCCCGTTGTTGCCTGAAAGCTTTCTAGAC
CAT

BS31355.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)3-RE 6021 CG12238-PE 1..6021 17..6037 30105 100 Plus
e(y)3-RB 6021 CG12238-PB 1..6021 17..6037 30105 100 Plus
e(y)3-RA 6021 CG12238-PA 1..6021 17..6037 30105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)3-RE 6531 CG12238-RE 379..6399 17..6037 30105 100 Plus
e(y)3-RB 7784 CG12238-RB 213..6233 17..6037 30105 100 Plus
e(y)3-RA 6937 CG12238-RA 785..6805 17..6037 30105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19634134..19636437 2320..17 11520 100 Minus
X 23542271 X 19632970..19634071 3422..2321 5510 100 Minus
X 23542271 X 19628099..19628764 6037..5372 3330 100 Minus
X 23542271 X 19630237..19630686 4398..3949 2250 100 Minus
X 23542271 X 19629515..19629816 4973..4672 1510 100 Minus
X 23542271 X 19629874..19630149 4674..4399 1380 100 Minus
X 23542271 X 19632637..19632907 3691..3421 1355 100 Minus
X 23542271 X 19629150..19629361 5183..4972 1060 100 Minus
X 23542271 X 19628902..19629092 5373..5183 955 100 Minus
X 23542271 X 19630745..19630900 3948..3793 780 100 Minus
X 23542271 X 19630965..19631067 3793..3691 515 100 Minus
Blast to na_te.dros performed 2014-11-28 11:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2881 29..529 301 54.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2293..2535 248..486 232 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6898 324..497 186 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2392 422..496 170 72 Plus

BS31355.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 18:25:43 Download gff for BS31355.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 768..6787 17..6036 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:54 Download gff for BS31355.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 785..6804 17..6036 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:30 Download gff for BS31355.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 785..6804 17..6036 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:30 Download gff for BS31355.complete
Subject Subject Range Query Range Percent Splice Strand
X 19630237..19630686 3949..4398 100 <- Minus
X 19630745..19630900 3793..3948 100 <- Minus
X 19628100..19628763 5373..6036 100 <- Minus
X 19628903..19629091 5184..5372 100 <- Minus
X 19629150..19629360 4973..5183 100 <- Minus
X 19629516..19629813 4675..4972 100 <- Minus
X 19629874..19630149 4399..4674 100 <- Minus
X 19630966..19631066 3692..3792 100 <- Minus
X 19632637..19632905 3423..3691 100 <- Minus
X 19632970..19634071 2321..3422 100 <- Minus
X 19634134..19636437 17..2320 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:54 Download gff for BS31355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19524270..19524719 3949..4398 100 <- Minus
arm_X 19524778..19524933 3793..3948 100 <- Minus
arm_X 19522133..19522796 5373..6036 100 <- Minus
arm_X 19522936..19523124 5184..5372 100 <- Minus
arm_X 19523183..19523393 4973..5183 100 <- Minus
arm_X 19523549..19523846 4675..4972 100 <- Minus
arm_X 19523907..19524182 4399..4674 100 <- Minus
arm_X 19524999..19525099 3692..3792 100 <- Minus
arm_X 19526670..19526938 3423..3691 100 <- Minus
arm_X 19527003..19528104 2321..3422 100 <- Minus
arm_X 19528167..19530470 17..2320 100   Minus

BS31355.pep Sequence

Translation from 16 to 6036

> BS31355.pep
MNDLRQQQMVAATSSSGSESGTAVESAAATSTAGSAGAAGRPQSNCSANS
NAKSVAASSTSEEEQRVSSTSSPAQRDQQLNADRDREQEPEPQQQQQREE
ALQHQHNQPGHITSTTASPPPTLPPPTTPCDDAPSTTGASASASSASGEA
PSAASAAGAAGGPMAATALEVESEERDGHKIILKLSKHANPNSNANESQP
GGDERRVEPLRIQLPCGGAEGGLVAKQQDAFDADASSCSSSCAEDEVATT
LGQQLRNTPHIVPKLTIRAANERRVGSVVPKLTIKLPENPAASGSNSNSG
SCSAAVSGAQSAMPAKNDAHLSSLSPASASSSSASSSSSSSSSSSLAEMQ
TVPKLMIKTTLAGSSCISSSEELPQQQQQIPKLTIKTGGGGQEHVHTVIM
THDLNNAQSIPKLTIKTKSIEMIEDEQAAKLEQQLQPLPKLTIKNLCSPK
HKVRAVLEEKPPTAASKLAIPKPTPNPTPAPMTNGGESNSSSQEFCGFSD
PDADIAAPASDDVRRNSDDMVIDDSLSKEHDPKIFHNLPPMPASNGIASG
GSKASKASKSAQSQHNVVDMVDLTSSPSPGSSPTHVPNNFTGRISPKGLL
IDCLRMQTAIGCYVPEEADSRVRPAASPNSNILLSQLTAPAKSFTTTTPK
SKSSKYPQLTERLMANGSGTGGGSVIAAESEAVVGPLPAANPAQSIIESI
EILDTPDGSPRVAYMDEDSNPMLNKHLQTIHKLAMDHGVEQRMDTQDNNN
ENHLKRTNSEGNESPSSRLPPSKQRRLDNDENDQQTQNCHDPARKCSESL
QALPPSHRSRKQKHERILNTDLEGSLFPPTQQQSISTPDQNGALSSEVEG
EDAKAQDPLEPATPQPPPVATPAGTGKKRGRPKRIQNQSSPDGGGAVTPK
PGTPQEEANSAVKSRRVQLLRKRLAIDMVSVGQEQADMKAKEKESSVGVP
NARVEDGLAETLESPKTRDHRPLRATRRTTTSTNTNLQPTPKSTRKRQSK
ASVQQSQLPPPTMAQFGSSESESNNNNNSSISFALSAQIDLTMCSSSSST
SSGAAANQQVIGGSGSSSMLPPTTILSSSDPLPDVIFQPNDFSSIMATQQ
LRSSRPSSISCGSTGGSQPDCHDEDNYTSALDNSGDETALPMPPTRGRGR
GRRSRGGRGRGSSSVDRAVSVGGTASTTPATQPRAPRMSRGASAVAKAIA
MSRPRCVGGLKHQPDPERLKGLFSPSPQVFEEDTRMSADLSNSNQSMASL
MEPPLTPQKQPDFLNNEESQSSMVSNVSMMDSNQGQSADAILGSALKRPK
KKKMETCVAEDTDYSASSIAEYDWPPPKGCCPSKNRDTFMIQEQVALYLG
ITSFKRKYPDLPRRSVDMEERNWLQEKGLVSEKLCDLGITAVWASDILDI
MYADFFDKYEEYKEYIRRKHLREIEAKQKALGLTVGAGRGLQARDRAMLS
ATKWNAYFNKSRKDERQSCMDLQTFTINQPQPRTAPTCTRLERSTSDLIR
AVAEEANIPAPPNLLPPRDYDEAFRNSDYAYPLTVVPDQFSMAYRQFEPA
ELRAYPLDTALDKPPTDLMAQLLQAKSEAVGSDEIKTSAPAPKDLGQEQS
AIKSVTVTAPVRRSRRSTRQQTDKVRTASSSSTSSAQSVSSASSGNGSSS
DTESGDESDFSSTSSCSSSTGASSGAGSEDEDGNECSSSVRLSTCGVCLR
SQHRNARDMPEAFIRCYTCRKRVHPSCVDMPPRMVGRVRNYNWQCAGCKC
CIKCRSSQRPGKMLYCEQCDRGYHIYCLGLRTVPDGRWSCERCCFCMRCG
ATKPEGLPQVAALSQASGGPSANGDRSKAARNKRLKWVHEYRIDHVTKIR
EHAAMFCVPCARNKPAKRQSAAGAAGAAAVTPVLEATSAQTDDSPMPSPG
LTTNGGRALSPTAALSPKAAVPVASLPPVLEATTVTTNIAGTIGRRQAGN
AVNITTMQCSSSSSSNFSGNGVTEDAANVTATGTATAAAGAPAATPIGIA
PPPVVA*

BS31355.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)3-PE 2006 CG12238-PE 1..2006 1..2006 10312 100 Plus
e(y)3-PB 2006 CG12238-PB 1..2006 1..2006 10312 100 Plus
e(y)3-PA 2006 CG12238-PA 1..2006 1..2006 10312 100 Plus
e(y)3-PD 2011 CG12238-PD 1..2011 1..2006 10296 99.8 Plus
e(y)3-PC 2012 CG12238-PC 1..2012 1..2006 10295 99.7 Plus