BS31365.complete Sequence
4838 bp assembled on 2012-09-14
GenBank Submission: KX804559
> BS31365.complete
GAAGTTATCAGTCGACATGATGACGCCAGAATCGAAAGCAATACAGCCGG
CAGCAGCAACAACAAAGCAAACAGCAGAAGCAACAGCAACAACAACAATG
GCTCACACACAACAAAAGTCGCAGTTGTCAACGTTGGCGAAAACAACAAC
GACAACGGCAACGAATAAGGCGGCCAAAAGCGTTGTCAGCAATGCAAATA
GCAGTGGCAACAATTCGAGCAAAAAGCTGGCTTTGTCTCAGTCTCAGAAA
ACAACAACAACAACAACACCACCAACGACGACGACAACAACAACAGCAGC
AGCAGCAGCAGAGGCAACAACTAATGCTGATAAAATGCAAAAGCAACAGC
AACTGAAGCAGCAACTTTTCGCTGCCTGCAGCATTAAAGTAAAAAGTGAA
AACACATTAGCAACTACTGCGAATGCAGCATTAGCAGCAGCAACAACCAC
AACAACAACAGCAACACCAGCACTTGCCACCGGCAAAGCAGCAAAAACAA
TATTAGAAAACGGCATAAAGAAGGAATCCACGCCTCCGGCTGTCGAATCC
GTTGAGGCCTCCTCCTCATCGTCATCCTCCTCCTCGTCCTCCTCATCATC
ATCGTCCTCGTGGCCGACGACAAGGAGAGCCACTTCAGAGGACGCCAGCA
GCAATGGTGGCGCCTCCGCCGACGAGGAGAAGTCGGAGGAGGACCCAACG
GCAGCTGTGGCTGCGTCTTCAACGGCGACAACGACTTCCGATTTGGCCAC
AACTTCAAGGCCACGCCCCGTCCTTCTAACGGCCGTCAATCCGCACATCA
TCTGTCACCTGTGCCAGGGATATCTGATCAATGCCACCACCATCGTCGAG
TGTCTGCACTCCTTCTGCCACAGTTGCCTCATTAATCACCTGCGAAAGGA
GCGATTCTGCCCGCGCTGCGAGATGGTCATCAACAACGCCAAGCCGAACA
TCAAATCGGACACCACGCTCCAGGCGATAGTGTACAAGCTCGTGCCGGGC
CTTTACGAACGGGAACTGATGCGCAAAAGGGCCTTCTACAAGGATCGTCC
CGAGGAGGCAGCTTTGGCCACGCCCGAGCAACGAGGCGATGATACGGAGC
ATCTGATCTTTAGTCCCTCGGATGATATGTCTTTGTCGCTAGAATATGCC
GAATTGGGGGAACTGAAAACCGATTCCGAGCCTGAGTTGGTGGACACACT
GCGTCCGCGGTACCTTCAATGCCCGGCCATGTGCCGTGTGAGCCACTTGA
AGAAGTTCGTCTACGACAAATTTGAGATTGATGCCCAGCGTTTTAGTATC
GACATTATGTACAAGGTCAAGACAATCGTTCTGCTTGACTACTACACGCT
AATGGACATTGCCTACATCTACACGTGGAAACGGGATGCACCCATGCGGT
TTTACTACCGTGTTTATGAGTCGCCCCAGCCGCTGGTGAAGCCGGCTCCT
CGTCGAGTGCTGCCACTAAAGCTGGAGAAGCAGGAGAGGGAGAATCAAGA
GCAACAGCTGGCAGTTGAAGTCGCGTCTTCGAAGGTGGAACCTGTGTCCC
TGCCCGAGGACCAAAAAGCCGAAGCTTCCATTAAAGTGGAGGAGCAGGAG
AGCACTAGAGAAATTGTGAAAGAAGTGATCAAAGATGTGGCAGCCACACC
CCCGACAGAGACACTGAAGCTGGTGATCAACCGAAATATGCTGGACAAGC
GTGAAAAGAGTCACTCTCCACAGATGAGCTCCAAATCGTCGTCGAAAAGT
TCTCCCTGCACTCCCGTTTCGTCACCCTCGGAGCCCAATATCAAGCTGAA
AATCGATCTGTCCAAGCAGAACAGTGTCACCATTATCGATATGTCCGATC
CCGAGCGCAGAGAGATTGTTAAACCCCTAAAGCCCGAGAAGGAGTCACGT
TCGAAGAAGAAGGACAAGGACGGAAGTCCCAAATCGTCGAGCAGCTCCAG
TTCCTCTTCAAGTGGAGAGCGCAAGCGTAAGAGTCCCAGCCCGTTGACGG
TTCCTCCATTGACCATTCGCACAGAGCGCATCATGAGTCCAAGCGGCGTG
AGCACCCTGAGTCCAAGAGTAACCAGCGGAGCTTTCTCGGAGGATCCCAA
GTCGGAGTTCCTCAAGTCGTTTGCACTGAAACCCATCAAGGTGAAAGTTG
AATCACCGGAAAGGACGTTAAACAACAGAGCCATCACCCCGCCTTCGCCT
TCAGTGCAACAGTCCGCTTCACCCAAATCGAAGGGTAACAACCTGGACGA
CAGTATTCTTATGAAACCGCCCAGCTGCATGCCTCCCAAATCCATTGCAT
CTTCGAAGAGAAAGAGCAAAGAACCAGTTAAGGCGGTGTCCAAGAAGCAA
AAACTATCGCCGCCCCTTCCAACGGTGGACTTTAAGATACGCCTGCCCGT
CACCAATGGCAATTCTTCAGGCACTGCATCTCCAAAGATAGAAAAACCGC
TGATGCCACCGCCGGCAAAGCCGCCAATGTTGGCTCCCCGGAAACTCCAG
CCCTCCGCTCAGTTTGCGCCGCCTCCATCGCCGATACATCATCATGCCGG
TGTGCAGATGTCAGCTCCTGGTAATCGAACACCCATCGCCAAACGCTATC
AGCCAATTTTACCCAAAGCTTCGCGACCAAATCCCTTTGCCAATATACCA
AACGATGTGAATCGATTGCTCAAAGATGCTGGTACCGAAATCAAGTCGAT
TGGTGGAGGATCAGTGGAGAACAACAGTAACGCTGCCCAAAAGCCACATC
TGTACGGACCCAAGGGAGAAAGTAAGATGGGACCCCCGGCCTTACCTGCA
ACCACCCCATCTCAGGGTAACAAAAACGTTGGAAAGCAGGCAGGCAATTT
GCCGATGTCAGCGCCGCCCAATAAGGGTAACAGTTCGAACAACTATCTGA
ATCTGGCGCTGTTCAATTCCAGTAAGTGCAAGGGCAAGGAGGCGCCTCCT
GGCTGCCGCACTCCCATGTACACGCCAAATTCGCCGATATACTCGCCCAG
TTCGCCGCAGTATGTGCCCAGCTACAATATTCCAACAATGCCCACCTATA
AGTATACACCGAAACCAACTCCAAATTCTGGTAGTGGTAACGGAGGCTCT
GGGAGCTATCTGCAGAATATGTTGGGAGGCGGAAATGGTGGATCTCTTGG
CGGATTATTCCCCTCACCGCCCACCAAGTCGGATCAGAATACTAATCCAG
CTCAAGGAGGAGGAGGTTCATCTTCAGCTACTCAAAGTGGAGGTAATAAT
GGCATTGTGAATAACAATATCTATATGCCCAATGAAGATGCGCCCGAAAA
GCAGCAGGTGAAGGTCAAGTCTCTGCTCAACTCGTGCAACATCAATATTC
CCTCCTCGCTATCGATCACCATCTCTCGGGATAATGGAGATTCTTCATCA
CCCAATAACGGACAGCATCCTAAGCACAAAAGTCCGGTCAACAATTACAT
TGAGATTGTTAAGCTGCCCGATCAGCCGCAGGATCAGGTCCAGGCTGCCA
AGGAGGCTCAGAAACGGCAGTCACCACCTGCTGCCGTTCCAGGACATCTA
GCCGCAAAGTTGCCCCCGCCGCCACCATCCAAAGCTATTCCTTCGCCGCA
GCATTTGGTGTCGCGTATGACGCCGCCACAGTTACCCAAAGTGGCCACTC
CACCGCCTCCAAGTTCTCCTCGCGTGATCACGCCACCAAAAACATCACCA
CCTGCCAATGCCGCAAAGGTAACGCCTTTGAAGCCAGTGCTCACGCCAAC
GCAGGTGGATAAGAAGACACCCAGCCCGGAGAAGCGAACCGCCGCCCAGA
TGGGCAGTCATTCACCAACTGCCAGTGAAAACAAGTCGCCCAAGGGCGGA
CCTGCAGGAGTGGCAAATTCGACTGGTGGCGCTCAGAATGGCGATCCAGC
GGCCAAGAAGTTCCGACCCATTCTGCCCCGCCAGAATGGCATGCCTGAGT
TGGCACCCAAGCTGCCAACACTGGCGCCCTTCGTTGGTTTCAACCCACTG
CAAAATCCAGCCGCTGGCAAGAAGGTGCCGCCCAGCAAGAAGTCACCGAA
TGCCGGAGCAGCTGCCCACCAGAGCGGCCAACAAAAGCTGGTCAATGGTG
GACAGTCGCAGCCGGCTCAACAGAAAACTAGCCCACCAGCCCAGAAGAAT
CAACAGCAGGTGAAGAAGGTGTCCAAGAATCCGACTCCACCGCCACCATC
CTTGCCGGCAGTCGGCAAAATGATGCCCCATCCCGTCATGCACAGTCAGA
ATGCTCCACTAAGCATCGCCTCCAGCGCCAGTGCTGCGGCAGTCGCCTCC
GGGCAATTGGACCTGAGCAACTTCCTCAAGGAGAACCTGAGGCGGGTGCA
TGCCGCGCAAGCGGCGCAGGCTGCCCAGGTGGCGGCCGCTGCCAACCAGT
CGAATATGATGTACAATCTGGCCCAAATGGGTCACATGACGCCAGCGATG
TACAACTACCAGCAGGCATATTTCAGGGAGCAGTTGTCGCGGATGCAGCG
CGTCGGAAACGAGGTTTTCAACGATTACCTGCAAAAGCTGAAGACTGCAG
CAGCGACCGGAGGAGGTGGTCCGGTAGAAGGAGAGCTTAAGCCCATGCTG
CCCACCGTCACGTTGCCCAGTCCAGGAGCTACTCCGCCGGCAGCCAGTCC
GAAAACATCACCCCTGCCAGCTGGAAAACTCACGGCAGCAGCTACGGCAC
CCCAAACCAAGGGAAACAGCAGCAGTGGAGCGGCTAATGCACGGCAGCAG
ACGGCGGCCACCGGCAACAACGGAGCAACAGTGCCCGCCGCCTCCTTGCC
ACCGGCCACCAAAAGCAAGTGAAAGCTTTCTAGACCAT
BS31365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psc-RC | 4806 | CG3886-PC | 1..4806 | 17..4822 | 24030 | 100 | Plus |
| Psc-RB | 4806 | CG3886-PB | 1..4806 | 17..4822 | 24030 | 100 | Plus |
| Psc-RA | 4806 | CG3886-PA | 1..4806 | 17..4822 | 24030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psc-RC | 6332 | CG3886-RC | 1006..5812 | 17..4823 | 24035 | 100 | Plus |
| Psc-RB | 5671 | CG3886-RB | 670..5476 | 17..4823 | 24035 | 100 | Plus |
| Psc-RA | 6007 | CG3886-RA | 1006..5812 | 17..4823 | 24035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12966517..12970182 | 4823..1158 | 18330 | 100 | Minus |
| 2R | 25286936 | 2R | 12977317..12978163 | 863..17 | 4235 | 100 | Minus |
| 2R | 25286936 | 2R | 12970321..12970525 | 1159..955 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 12974504..12974594 | 954..864 | 455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..632 | 55..161 | 140 | 63 | Plus |
BS31365.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-14 14:04:12 Download gff for
BS31365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psc-RA | 1001..5805 | 17..4821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:43 Download gff for
BS31365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psc-RA | 1006..5810 | 17..4821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:38 Download gff for
BS31365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psc-RA | 1006..5810 | 17..4821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:38 Download gff for
BS31365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12966519..12970181 | 1159..4821 | 100 | <- | Minus |
| 2R | 12970322..12970525 | 955..1158 | 100 | <- | Minus |
| 2R | 12974504..12974594 | 864..954 | 100 | <- | Minus |
| 2R | 12977317..12978163 | 17..863 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:43 Download gff for
BS31365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8857827..8858030 | 955..1158 | 100 | <- | Minus |
| arm_2R | 8862009..8862099 | 864..954 | 100 | <- | Minus |
| arm_2R | 8854024..8857686 | 1159..4821 | 100 | <- | Minus |
| arm_2R | 8864822..8865668 | 17..863 | 100 | | Minus |
BS31365.pep Sequence
Translation from 16 to 4821
> BS31365.pep
MMTPESKAIQPAAATTKQTAEATATTTMAHTQQKSQLSTLAKTTTTTATN
KAAKSVVSNANSSGNNSSKKLALSQSQKTTTTTTPPTTTTTTTAAAAAEA
TTNADKMQKQQQLKQQLFAACSIKVKSENTLATTANAALAAATTTTTTAT
PALATGKAAKTILENGIKKESTPPAVESVEASSSSSSSSSSSSSSSSSWP
TTRRATSEDASSNGGASADEEKSEEDPTAAVAASSTATTTSDLATTSRPR
PVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPR
CEMVINNAKPNIKSDTTLQAIVYKLVPGLYERELMRKRAFYKDRPEEAAL
ATPEQRGDDTEHLIFSPSDDMSLSLEYAELGELKTDSEPELVDTLRPRYL
QCPAMCRVSHLKKFVYDKFEIDAQRFSIDIMYKVKTIVLLDYYTLMDIAY
IYTWKRDAPMRFYYRVYESPQPLVKPAPRRVLPLKLEKQERENQEQQLAV
EVASSKVEPVSLPEDQKAEASIKVEEQESTREIVKEVIKDVAATPPTETL
KLVINRNMLDKREKSHSPQMSSKSSSKSSPCTPVSSPSEPNIKLKIDLSK
QNSVTIIDMSDPERREIVKPLKPEKESRSKKKDKDGSPKSSSSSSSSSSG
ERKRKSPSPLTVPPLTIRTERIMSPSGVSTLSPRVTSGAFSEDPKSEFLK
SFALKPIKVKVESPERTLNNRAITPPSPSVQQSASPKSKGNNLDDSILMK
PPSCMPPKSIASSKRKSKEPVKAVSKKQKLSPPLPTVDFKIRLPVTNGNS
SGTASPKIEKPLMPPPAKPPMLAPRKLQPSAQFAPPPSPIHHHAGVQMSA
PGNRTPIAKRYQPILPKASRPNPFANIPNDVNRLLKDAGTEIKSIGGGSV
ENNSNAAQKPHLYGPKGESKMGPPALPATTPSQGNKNVGKQAGNLPMSAP
PNKGNSSNNYLNLALFNSSKCKGKEAPPGCRTPMYTPNSPIYSPSSPQYV
PSYNIPTMPTYKYTPKPTPNSGSGNGGSGSYLQNMLGGGNGGSLGGLFPS
PPTKSDQNTNPAQGGGGSSSATQSGGNNGIVNNNIYMPNEDAPEKQQVKV
KSLLNSCNINIPSSLSITISRDNGDSSSPNNGQHPKHKSPVNNYIEIVKL
PDQPQDQVQAAKEAQKRQSPPAAVPGHLAAKLPPPPPSKAIPSPQHLVSR
MTPPQLPKVATPPPPSSPRVITPPKTSPPANAAKVTPLKPVLTPTQVDKK
TPSPEKRTAAQMGSHSPTASENKSPKGGPAGVANSTGGAQNGDPAAKKFR
PILPRQNGMPELAPKLPTLAPFVGFNPLQNPAAGKKVPPSKKSPNAGAAA
HQSGQQKLVNGGQSQPAQQKTSPPAQKNQQQVKKVSKNPTPPPPSLPAVG
KMMPHPVMHSQNAPLSIASSASAAAVASGQLDLSNFLKENLRRVHAAQAA
QAAQVAAAANQSNMMYNLAQMGHMTPAMYNYQQAYFREQLSRMQRVGNEV
FNDYLQKLKTAAATGGGGPVEGELKPMLPTVTLPSPGATPPAASPKTSPL
PAGKLTAAATAPQTKGNSSSGAANARQQTAATGNNGATVPAASLPPATKS
K*
BS31365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psc-PC | 1601 | CG3886-PC | 1..1601 | 1..1601 | 8225 | 100 | Plus |
| Psc-PB | 1601 | CG3886-PB | 1..1601 | 1..1601 | 8225 | 100 | Plus |
| Psc-PA | 1601 | CG3886-PA | 1..1601 | 1..1601 | 8225 | 100 | Plus |
| Su(z)2-PB | 1368 | CG3905-PB | 33..535 | 261..796 | 400 | 27.1 | Plus |
| Su(z)2-PA | 1368 | CG3905-PA | 33..535 | 261..796 | 400 | 27.1 | Plus |
