BS31368.complete Sequence
6497 bp assembled on 2012-07-27
GenBank Submission: KX800467
> BS31368.complete
GAAGTTATCAGTCGACATGGAAAACTTAAACTTTGCACGCACGCCGCAAT
TTCTGCGCAAAGTTATCTCCGAGGCGCGCAGATCGTTTATAAACAGCGAC
CATTTTTCCGCCTCATCGACAAGGGGACGCTCGGAAACTGAGGAGGAGGC
TATATCCGAAATGGAGCTGGCCCACACTTTGATCCTTAATGAGGATGCTC
TCAAGCAGTTGCCCGAACACAAGCGGCCTGTGTTCGAGTTGGAATGGCTG
CGCTACTTGGAGAAGGCCCTGCCACTGGTGTCCAAAGCGGAGATCAAGGC
GAGCCAGAAGAAGCTGGTGCAGCAGCTCTCTGAAAGAATCCAGGGCGCAC
CAGGTCCGCCCATTCGTAAGCTCATTGCTAGCGCGTTGGCCACGCTATTC
TCCGTTGGTGACACCTTCATGCTCTTCGACACCGTCAACGCCTGCAATGA
CATCCTGAAGAACAAGGACGACTCGCCCAGCTACTTGCCCACAAAGCTTG
CCGCCATTTGTGTGCTGGGCTCTATGTATGAGAAGCTGGGCAGGATGATG
GGCCGCACCTACGAGGATACGGTGCAGATCCTTATTCGAACGCTTCGCAA
CGCTGAGTCGCAGGCGCGGATTGAGATCATGCACACGCTGGAGAAGGTGA
GCGCTGGCATGGGCACAGCCATTGCCAACGTGCACAAGGATATTTACAAG
GCGGCCAAGCATTGCCTGTTGGACCGAGTTATGGCTGTTCGAGTGGCTGC
AGCCCGCTGCATCCTTAAAATGATATACAGTGCACCATTCCTGTACCAAA
CGGAGCTGGAAAGCTTGGGAACATTGTGTTTCCGAGCCTTCGACGGCAGC
AACTATGAAGTGCGATGTGCGGTAGCTCAGCTGCTGGGAACACTTCTAGC
CTATACTCAACAACTGGCAGAAGCGGCAACAAGCAAAAAGAAACAGGGAC
AAGCGGTGGCTATTCAAGCGGGCAAGGGAGCTACCCAACGCTTGGTTTCC
CTGGATGAAGCTCTGGGCATTCTCATGTCAGGTTTCCTTCGTGGTGGCGC
ATCTTTTCTCAAGGGTACCGGAGAGATTATCAAAGGCAGCTCAGGTGTCA
ACCGTGAGGTGCGAGTGGGTGTAACGCATGCATACGTGGTTTTCGTGCAA
TTCATGGGCAGCGTTTGGTTGGAACGACAGTTAAGCACATTTCTGGCACA
CGTTTTGGATCTCGTGGCCAATCCAAAGGCAGCGTGCTCCCACGTAGATG
CAGTGTATTCACGGAAATGCATTAGCTTTATACTCCGATCAACGATTGGA
AAGATGCTAGGCGAGAAGGCGCAGAGCGCTGCCTGCAAGGAACTGGTCCA
TCTGGTAGCCAAACAGATGAACTCAATTGACTTCAATCCCGAGAACGCCA
AGGATTCTAATCAAGAAACACTGTTCAGTCAGCACCTGCTGGTGTGTGCC
CTCCAGGAATTGAGTTCTCTACTTATTGGATTAGGAACCACGGCCCAGAA
CTTGTTGGGAGATCAATCCCTGCAAGCGATCGATGCTACCTGTGCCGTAT
TGGTACATCCCTGCGCCGCTGCCCGTTTGGCTGCCGCTTGGTGCTTACGA
TGCGCTTGTGTGGCGGTTCCTGGGCAAATCACGCCACTAATTGATCGCTT
TGTGGAGGCCATCGAGCAGATGCGATCCTCGCCAGAAGCAATGGCCGGAT
ATAGCTGCGCTTTGGCGGCAATTTTGGGAAGCGTTCGGTACTCGCCATTG
GGCATACCCCACACAAAGGGAAAGGTCGTGTTCAACTGTGCGGAGGAACT
GCTGCGATCTGCTTCCCAGAATAGCCGCATGTCGCTGCACCGTACCCAGG
CCGGCTGGCTATTAATTGGAGCTATAATGACTTTGGGATCGCCGGTAGTC
AAGGGCTTGCTGCCGCGAATGCTGCTACTGTGGCGGAACTCTTTCCCGCG
GTCCAACAAAGAGCTTGAATCGGAAAAGGCGCGCGGCGATGCCTTTACCT
GGCAGGTGACCCTAGAGGGCAGAGCTGGAGCTCTTTCTGTAATGCACAGC
TTCCTGCTTAATTGCCCGGATCTCCTGAACGAAGACATAACCAGACGACT
ACTCACCCCCATCGAAAGCGCCCTGGCCATGTTGGTCAACTTGGCATCTG
TCCTAAAGAGCTATGGAACCCAGCTAAAGGCACCGGCAGCTATGGTGCGG
CTTCGTCTCTTTGAAACGCTGACGCTGCTGCCTGCTAATGCGCTAGAGGC
CTCCTATACCCATCTTCTTCGCATGCTCGTCTCGGAGTTTACTCTTTCGG
ATAACGCGGCCAACACTACAAACTCATTGTTGCGGACGCTTTGTCATGGT
GATGATTCGATCATACTGGGCACCTGGCTGCAAGAAACTAATCATCGCAC
CATTGAGGATCAGCTGCAACCCAATAGCGCCGCGGGATCTGGCGCCTTAG
AGCACGATCCATGCTGTTTGTACCGTCCCAGGTCTGCCCAAGGCAATGGA
TCCAGCTCGAATGGTTCATCAGCAACATCTACTGGTGGAAGCAACGGCGG
TGGAGGAAGCAACATTCAGCAGATCAGCAAGGCCCAACAGTGTCCAGGAC
CATTGCCACTCGGGGTAGCAGTGATCGATATGGCAGTGACTCTGTATGGA
ACCATTTTTCCCAAAGTGGCAAACAAGCATAGGCTGCAAATGCTGGAGCA
CTTTACTGAGTGCATTCGCCAGGCCAAGAGCAGTCGCCAAGAAGCCGTTC
AAATGAATATCTTTACGGCTCTGCTATGCGCTCTAAAAAATCTGACAGAT
AGCAAGACAAGCCTAGGACAGGAGGATGTTCGAAAGAGTGCCACGGCATT
GATAGTTGCTTCGCTGACGAGTGCCAACTCTACCATACGGTGTGCGGCTG
GAGAGGCCTTGGGTCGATTGGCCCAGGTCGTGGGAGATTCTCATTTTACC
GCGGAGTTGGCTCAAAATAGTTTTGATAAACTAAAGTCTGCCAGAGATGT
GGTCACGAGGACGGGACATTCACATGCCCTGGGCTGCCTGCATCGCTATG
TGGGTGGCATGGGCTCGTCGCAGCATCTGAGCACCAGTGTATCTATCCTT
TTGGCCTTGGGTCAAGATAGTGCATCGCCAGTGGTACAGGCTTGGTCGCT
TTATGCTCTAGCGCAGATTGCCGACTCTGGAGGACCAATGTTCCGCGGCT
ACGTGGAGGCAACTTTGACGCTGTGTCTGAAACTTTTACTTACCGTACCC
CACGCTCATGTTGATGTACATCAGTGTGTGGGCCGTGTAGTCAATGCGTT
GATCACCACCGTGGGACCGGAGTTGCAAGGAGGAGGAGGCGCAGTGGCCA
CCATGAGAGGATCATTCCTCTGCTCAGCAGCTCTTCTTCAATCACATTCG
GATCCTCTTGTACAAGCTGAGGCTATTGGCTGCCTGCAGCAGCTACATCT
TTTTGCCAGTAAATCTCTGCAACTAGAGGAGTTGGTACCCACGCTGGTTG
GAATGCTAGCCTGTAACTATTTCATACTTCGCAAGGCCTCCGTTTCCTGC
CTCCGTCAGTTGGCCCATCGAGAAGCTAAGGAAGTGTGTGAATTAGCTTT
AACTATTAACGCCGAACAACTTCCGGATTTGGTAATTACGGAGTATGGAC
TTCCAGGGCTGCTTTTCTCACTGCTCGACACAGAAACGGATGCCGAGATG
CTGAGAAACATTCACGATACACTCACATCAATGCTCCAAATGCTGGCTGC
AGATAATCTCAGCTCCTGGTTGAGTCTTTGCAAGAATGTGTTAACCGTTG
CTGTGGAAGGAGGACTAAATGATGATCCCGCTGCTGGGGAACAAAGCAAG
AGCAAGGAGGCTGGTGGAGAAGATGATGAAGAGGACGAGGAGGAAGAGTA
TGCTGATGATGTAACAGAATACCGAGCAGAGGAGAACACATCCACCCATC
CAGCAGTGCAGCCAAGGTGGCCCACTCGTGTTTTCGCCGCCCAGTGCGTG
CGGCGGATCATAGCCAGCTGTGAGGCTGCCAGTTCAGTGCACTTTGATCT
CCTGCAGGCTAAGGAACAGCAACTTATTCGTTCTCGCGGAGATTACCTCA
TCCTCCATTTAGCGGAACTTATTCGAATGTCCTTTATGGCTGCCACCTCG
GACTCGGATCAATTGAGATTAGAAGGATTGCGCACCCTGCAGGAAATAAT
CGATCGATTTGCTAACGTTCCGGAACCGGAGTTCCCTGGTCACCTACTCT
TGGAGCAGTTCCAGGCTCAGGTGGGAGCTGCCTTGCGCCCTGCTTTCGCG
CCGGATACCCCCTCCCATGTGACAGCTGCTGCTTGTGAAGTTTGCTCAGC
GTGGATTGGATCTGGAGTGGCTCGCGACATAGGAGATCTAAAAAGAGTTC
ACCAGCTGTTAGTCAGTTCCCTTGATAAGCTTTCCTCAAAAACCAACAGC
ACTCAGTTATATAACGAATCCATGGCTACTTTGGAGAAGCTAAGCATTTT
AAAGGCGTGGGCAGAGGTTTATATTGTGGCCATGATAGGAAATGGAAAGG
CTCCGGCTTCCCTACTGAATCTCCAATCCCAACAATCCGGCTTTCAATCC
TTAACCAATCTGGAAACGGACTCGGATGTTCCTGACAGTAGGGGTGAAAG
TCTTTTAGGATTAGTGCAACCTGAGCTCCACAATCTTTCAACACACTGGC
TGAGTGCTATGAAGGATCACGCCTTGCTGCTTCTACCTGCGGAGTTCCAA
TCCCAACTACCGCACGACGGAGGAGCCTTTTACACCACGGACACCATTAA
TTCGTCAAAACCACATTACATGACCAGTTGGCCCCCAATCCTCTATGCCT
CCGCACTATGGTTAAGGGATGAAGGGTTCGCCCGTCATCTAGACACAAGT
GAAGCCGCAGCTGAGTCCAACAATAATCAGATCACTCATGGATCTTTGTC
AGCGGATCGCTTCCATATGATCTTCGGCATCTGCATGGAGGCGCTCTGCA
GCATGAGAAGCTCTGAAAGGCCGAGAAACATTGTGAGCTGCCTTCGCTCA
CTGCACAGCATCTTTGATTCTGATTGGGCTAGGAGGCAGTTGGTCAAGGA
TCGGGCTTTAACCATTGAACTCTGTCATGTTCTACATCGTCAGATACTGA
CGAGAGATGAATTACTCGTACAACTTCTGTGCGTAGAAATTTTAAAGCAA
ACAATCCGCGCTGCTAGGGAAGACTTAGAAAGAAAACGGGACGATAATGC
CAATTCTGAGGACGGAAAGGGTGGAGAGCGACATGGAGAAGATGATTCTA
TGCAGCCAGGAAGCTCGCATGTCTACGCCGTTCTGGAGGTTTGTCTTTGC
CTATTTGTTCGCCAAATACCTACGATGAATCCCACGAGGCAGGGAGCTGG
TGGCTCCGGCTTACAGCTGGACTTTGCCTATGCCAAAATGGCCACTGGCT
CGTCATTCTTCTCGGTGCTCGGCGATGAAAACGGCCTGCTAGTATCCAGC
GGACTGCAGTGCGTCGAACAGTTGATGGATTTGTGTACTCCCAAAGGTGC
CCTTGCAATCCTGCCCACCGTCCTGTATATGACAACCAGTATCGTTAAAG
AAATCGCCAACAAGTCGGCCATAGATAGTACTATCTTGGCAAATACGTGT
GCTGTGAAGTCTGCCCTGCAGTGCTTGCGATCCGTTTGTGTCCACAAGTG
GGCTAAAGTAGAGGAGACAACCGAGGAATGGCAACAGTTACTGCAAAGTG
CACTGGCCACCATTGTGGATCTCACCAAAACGGCTGGCGATAACGAGGAA
AGGAAAGTCGACGAGGTCACTATGCTGCTGGCCATCACTGTTTTTATTCT
ACATACTCCCGCCTCCGTTGTGGCTACACCTTCATTGCAATATCCATGCA
TTAATCACTTCCGGCAGTGCCTGCAGTCGGAGAACCTCTCGGTGAAGCTG
CGCTGCATCGAGACCACGCGATCGATCTTCGCTCGGGCCGAATTGAAGAC
GGCAACACCCTACATCCACGCACTTGCGCCTAGGATAATCGAATCGTTGT
ATGCGGAGTCCAGCAAGGTGCCCACAAGCGAACTGGAGCTACAGGTCACC
CTGGAGAGCATCGTTACCGTGGAGCAGCTTATAGACTTGTCGGAGCCGCA
GAACCATATTCAGATGCTGACTCTGTTGGTCCCTGTGCTCATTGGCTTCC
TAGCGGAACCCAGTCGACTCCGGACGCTGCCAAAGTATCAACGGCAGCTG
CACGACCAGGCGCTGCAGTGGCTACTGAAGATCGGTCCGAAATATCCGCA
GGAGTTTAAGGCCCTGATGGGTCAAACACCGGAACTGCGACAAAAACTAG
AAGCGGCCATTCGCAGCCAACAGCAGTCGATTAACATTGCCCAAAAAGCA
AGCGAGGCGCAGAGGAACCTGCTGGCCAAGCCGCAGAAGCCTACGATCAA
GCTGAAGACGGATTTCAGTAACTTCCAATGAAAGCTTTCTAGACCAT
BS31368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-RC | 6465 | CG2747-PC | 1..6465 | 17..6481 | 32325 | 100 | Plus |
| CG2747-RE | 6486 | CG2747-PE | 1..6486 | 17..6481 | 32080 | 99.7 | Plus |
| CG2747-RD | 6321 | CG2747-PD | 1..6321 | 161..6481 | 31605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-RC | 7026 | CG2747-RC | 334..6798 | 17..6481 | 32325 | 100 | Plus |
| CG2747-RE | 7289 | CG2747-RE | 334..6819 | 17..6481 | 32080 | 99.7 | Plus |
| CG2747-RD | 7016 | CG2747-RD | 146..6546 | 81..6481 | 32005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8018208..8021951 | 6155..2412 | 18720 | 100 | Minus |
| 3R | 32079331 | 3R | 8022953..8024593 | 2139..499 | 8205 | 100 | Minus |
| 3R | 32079331 | 3R | 8024653..8025073 | 498..78 | 2105 | 100 | Minus |
| 3R | 32079331 | 3R | 8016680..8017005 | 6481..6156 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 8022618..8022891 | 2413..2140 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 8026777..8026841 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:52:07 has no hits.
BS31368.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 18:25:44 Download gff for
BS31368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 315..6778 | 17..6480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:57 Download gff for
BS31368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 334..6797 | 17..6480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:32 Download gff for
BS31368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 334..6797 | 17..6480 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:32 Download gff for
BS31368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8016681..8017005 | 6156..6480 | 100 | <- | Minus |
| 3R | 8018208..8021949 | 2414..6155 | 100 | <- | Minus |
| 3R | 8022618..8022891 | 2140..2413 | 100 | <- | Minus |
| 3R | 8022953..8024593 | 499..2139 | 100 | <- | Minus |
| 3R | 8024653..8025069 | 82..498 | 100 | <- | Minus |
| 3R | 8026777..8026841 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:57 Download gff for
BS31368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3842403..3842727 | 6156..6480 | 100 | <- | Minus |
| arm_3R | 3843930..3847671 | 2414..6155 | 100 | <- | Minus |
| arm_3R | 3848340..3848613 | 2140..2413 | 100 | <- | Minus |
| arm_3R | 3848675..3850315 | 499..2139 | 100 | <- | Minus |
| arm_3R | 3850375..3850791 | 82..498 | 100 | <- | Minus |
| arm_3R | 3852499..3852563 | 17..81 | 100 | | Minus |
BS31368.pep Sequence
Translation from 16 to 6480
> BS31368.pep
MENLNFARTPQFLRKVISEARRSFINSDHFSASSTRGRSETEEEAISEME
LAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQKKL
VQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILKNK
DDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLRNAESQA
RIEIMHTLEKVSAGMGTAIANVHKDIYKAAKHCLLDRVMAVRVAAARCIL
KMIYSAPFLYQTELESLGTLCFRAFDGSNYEVRCAVAQLLGTLLAYTQQL
AEAATSKKKQGQAVAIQAGKGATQRLVSLDEALGILMSGFLRGGASFLKG
TGEIIKGSSGVNREVRVGVTHAYVVFVQFMGSVWLERQLSTFLAHVLDLV
ANPKAACSHVDAVYSRKCISFILRSTIGKMLGEKAQSAACKELVHLVAKQ
MNSIDFNPENAKDSNQETLFSQHLLVCALQELSSLLIGLGTTAQNLLGDQ
SLQAIDATCAVLVHPCAAARLAAAWCLRCACVAVPGQITPLIDRFVEAIE
QMRSSPEAMAGYSCALAAILGSVRYSPLGIPHTKGKVVFNCAEELLRSAS
QNSRMSLHRTQAGWLLIGAIMTLGSPVVKGLLPRMLLLWRNSFPRSNKEL
ESEKARGDAFTWQVTLEGRAGALSVMHSFLLNCPDLLNEDITRRLLTPIE
SALAMLVNLASVLKSYGTQLKAPAAMVRLRLFETLTLLPANALEASYTHL
LRMLVSEFTLSDNAANTTNSLLRTLCHGDDSIILGTWLQETNHRTIEDQL
QPNSAAGSGALEHDPCCLYRPRSAQGNGSSSNGSSATSTGGSNGGGGSNI
QQISKAQQCPGPLPLGVAVIDMAVTLYGTIFPKVANKHRLQMLEHFTECI
RQAKSSRQEAVQMNIFTALLCALKNLTDSKTSLGQEDVRKSATALIVASL
TSANSTIRCAAGEALGRLAQVVGDSHFTAELAQNSFDKLKSARDVVTRTG
HSHALGCLHRYVGGMGSSQHLSTSVSILLALGQDSASPVVQAWSLYALAQ
IADSGGPMFRGYVEATLTLCLKLLLTVPHAHVDVHQCVGRVVNALITTVG
PELQGGGGAVATMRGSFLCSAALLQSHSDPLVQAEAIGCLQQLHLFASKS
LQLEELVPTLVGMLACNYFILRKASVSCLRQLAHREAKEVCELALTINAE
QLPDLVITEYGLPGLLFSLLDTETDAEMLRNIHDTLTSMLQMLAADNLSS
WLSLCKNVLTVAVEGGLNDDPAAGEQSKSKEAGGEDDEEDEEEEYADDVT
EYRAEENTSTHPAVQPRWPTRVFAAQCVRRIIASCEAASSVHFDLLQAKE
QQLIRSRGDYLILHLAELIRMSFMAATSDSDQLRLEGLRTLQEIIDRFAN
VPEPEFPGHLLLEQFQAQVGAALRPAFAPDTPSHVTAAACEVCSAWIGSG
VARDIGDLKRVHQLLVSSLDKLSSKTNSTQLYNESMATLEKLSILKAWAE
VYIVAMIGNGKAPASLLNLQSQQSGFQSLTNLETDSDVPDSRGESLLGLV
QPELHNLSTHWLSAMKDHALLLLPAEFQSQLPHDGGAFYTTDTINSSKPH
YMTSWPPILYASALWLRDEGFARHLDTSEAAAESNNNQITHGSLSADRFH
MIFGICMEALCSMRSSERPRNIVSCLRSLHSIFDSDWARRQLVKDRALTI
ELCHVLHRQILTRDELLVQLLCVEILKQTIRAAREDLERKRDDNANSEDG
KGGERHGEDDSMQPGSSHVYAVLEVCLCLFVRQIPTMNPTRQGAGGSGLQ
LDFAYAKMATGSSFFSVLGDENGLLVSSGLQCVEQLMDLCTPKGALAILP
TVLYMTTSIVKEIANKSAIDSTILANTCAVKSALQCLRSVCVHKWAKVEE
TTEEWQQLLQSALATIVDLTKTAGDNEERKVDEVTMLLAITVFILHTPAS
VVATPSLQYPCINHFRQCLQSENLSVKLRCIETTRSIFARAELKTATPYI
HALAPRIIESLYAESSKVPTSELELQVTLESIVTVEQLIDLSEPQNHIQM
LTLLVPVLIGFLAEPSRLRTLPKYQRQLHDQALQWLLKIGPKYPQEFKAL
MGQTPELRQKLEAAIRSQQQSINIAQKASEAQRNLLAKPQKPTIKLKTDF
SNFQ*
BS31368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-PC | 2154 | CG2747-PC | 1..2154 | 1..2154 | 10915 | 100 | Plus |
| CG2747-PA | 2165 | CG2747-PA | 1..2165 | 1..2154 | 10893 | 99.5 | Plus |
| CG2747-PE | 2161 | CG2747-PE | 1..2161 | 1..2154 | 10889 | 99.6 | Plus |
| CG2747-PF | 2172 | CG2747-PF | 1..2172 | 1..2154 | 10867 | 99.1 | Plus |
| CG2747-PD | 2106 | CG2747-PD | 1..2106 | 49..2154 | 10679 | 100 | Plus |
