BS31373.complete Sequence
5555 bp assembled on 2012-07-27
GenBank Submission: KX802995
> BS31373.complete
GAAGTTATCAGTCGACATGAAGGCGCCACATAGTGCAACATATCAGGATA
ACTATGCTGATGCGGCCATGACAGCCAGGACACGGCCAAGCATGGACATG
GATCAGCAGCGAAATCGAAATCAGGCGGAGCTGAGGCTCCTGCCCGCCCA
GCGCACCTCCACCTCCGCCTTTGAATCCCCCGACTTGCGGTTCAACAAGG
CTCGCCGCCGGCGGAGAAGCGAGCAAGTGCCTCCCGTGGTCGTGGAATAC
CGTCGCTCCTACCGCGTGCTCATCGTCAGCGCCCTGCTGGTCAGTCTGGC
GGCCAGTTTCGTGACGCTCAGCGCCGGATTCCAGCTAGATGGATCGCAAA
ACTCCTTCTACACCTTCCGCAAGTGGTACACCGGACTGAATGGGACCCTC
GAACTGGAGTTCAAAACGGAACAGCCCAACGGATTGGTTCTCTACACCGA
CGACGGCGGCACCTACGACTTCTTCGAACTGAAGCTGGTGGAAGGAGCAC
TGCGGCTGAGATATAACCTTGGTGGCGGAGCTCAAATCATCACCGTGGGT
CGGGAACTGCACGACGGCCACTGGCACAAGGTGCAGGTCCTGCGGAACGA
TGAGCAGACATCGCTCATCGTGGACGGCGTCTCCCAGCAGCGATCGACCA
AGGGGAAGGAGTTCCAGTTCGGCAAGTTCGCGAGCAACTCGGACGTCTAT
GTGGGCGGTATGCCCAACTGGTACAGCAGCAAGCTGGCCCTGCTCGCCCT
GCCATCCGTTATCTTCGAACCGCGTTTCCGTGGCGCCATCCGCAATCTGG
TCTACGCGGACCAGCCGGGCGGCTCCACCAGGCGCCAGGAGATCAAGCAG
CAGCGCGACATCAAGTGCGGCGATGTGCCCTGCGATCACGGAGAGCTGCC
CGCCCGTGAAAGGCCGCTCAGGGGTGTTCGGGGTGGCAACACAACCGATG
CCTGTGAACGGAATGATCCTTGCCAGCACGGCGGCATCTGCATATCCACT
GATTCCGGTCCAATTTGCGAGTGTCGAAACCTCGAGTACGATGGCCAGTA
TTGTGAGAAGGAGAAGGCGCCATCGGAAGCAACGTTCCGCGGTACACAGT
TCCTCTCCTACGACTTGGGCCAGACGGGCGCCGAGCCGATAGTGAGCGCC
CAGGATGCCATATCCTTCTATTTTCGCACCCGCCAGCCGAACGGTCTGCT
TTTCTACACTGGCCACGGCACGGACTATCTAAATCTGGCGCTGCGTGATG
GAGGCGTCTCCCTGACCATGGGTCTGGCTAATGGCAAGCAGGAGATGCAC
ATAAAGCCCTCAAAGGTGCGCTTCGACGACCACCAGTGGCACAAAGTCAC
CGTGCACCGTCGCATTCAGGAGATCTCCTCCATAACCAGCTTCTGTCGGC
TGGTTACCGTGGTGGATGATGTCTATACGGATCACTCCCACATTGCTGGC
AAGTTCACCATGCTCTCCTCCTCGCGGGTTTACGTTGGTGGTGCTGTTAA
TCCTCGAGCGCTTTTGGGTGCCCGTGTGCACACTAACTTCGTGGGCTGCC
TGCGCAAGGTGGAGTTCTCAGCGGATACGCTTAATCTGAACCTCATAGAC
CTGGCCAAGAGCGGTTCCAAGCTGATCCAGGTTGCTGGCAATCTGGAATA
TCAGTGCCCCAGTGGCGATCCACAGGATCCCGTGACCTTCACCACTCGCG
AATCGCATTTGGTCCTTCCTCCCTGGGAAACTGGCAAGCAGAGTTCTATA
AGCTTCAAATTTCGCACCAAAGAACCGAATGGCATCATTGTCCTGGCCAC
AGGATCCAAGCAACCACGGGCCAAAAACCCCGTTTTGATTGCCATTGAGC
TGCTGAATGGGCACATCTACATCCATTTGGACCTCGGATCCGGAGCCTCC
AAGGTGCGAGCCTCGCGACGTCGCGTGGACGATGGCGACTGGCATGACCT
GATTCTTCGGCGGAATGGACGCGACGCCAAGGTGAGCGTGGATGGGGTGT
GGAACGACTTCCGGACGCCCGGTGACGGCACCATCCTCGAGCTGGACGGG
CACATGTACCTGGGCGGAGTGGGTCCCGCCTACAATAGCGTGTCCTGGCC
GGCGGCCATTTGGACGGCCACGCTGCGCCAGGGATTCGTAGGCTGTTTGC
GTGACCTGGTGCTGAGTGGCAAGGCGATCGATATAGCGGCATTTGCACGT
GTCCAGGATTCGGCCTCCGTGAAGCCATCATGCCATGTGCAGGCCAACGT
TTGCAACGGCAATCCCTGCCTGAACGGAGGCACCTGCCTGGAGGGCTGGA
ATCGACCTATTTGCGACTGCTCGGCCACGCTGTACGGAGGACCCACCTGT
GGACGGGAACTCGCCACGCTGGCCTTCAACGGCAGCCAGCACATGACCAT
CTGGCTGGGCAATGGACAAGGCACCAAGACGCAGACCGAGGAGCTGGTCA
TCCGCTTCAAGACCTCGCGTCCGGCAGGACTCCTGCTGTTGACCAGCGCG
GAGTCCAACTCGCCGGATCGTCTGGAGATCGCTCTGGTGGCGGGAAGGGT
GCGGGCCAGTGTGCGGTTGAGCGATCGTGAGAAGAACTTGCTGGCCGGCC
AGTCGGTGCTCAACGACAACAACTGGCACACGATCCGCTTCTCGCGCAGA
GCCTCCAATCTGCGGCTGCAAGTCGACGGGGCTCCCCCCGTCAGGGGTAT
GTTATCCGAAACGATTCTGGGTCGCCACAGTACCATGGAGATTCGCTCGG
TTCACCTGGGTGGTCTCTTCCACGCCGAGGAGGAGATCCAGATGACCTCC
ACCATGCCGAACTTTGTGGGTCAGATGCAGGGCTTGGTGTTCAATGGCCA
GCGCTATTTGGATATTGTCAAGAGTCTGGGACCGGAGCTCTCGGCTCTGC
CCAGTGCCACCTTCAAGTTGACTGCCCGCTTCGTGAACTCTCCGGCCGGA
CAGCCCTACCATGCAGCCACGTTCCGCTCCAAGCACTCATACGTGGGTCT
GGCCATGTTGAAGGCCTACAACAGCATTTCCATTGATTTCCGCTTCAAGA
CCGTGGAACCCAATGGTCTGCTCGTCTTCAATGGCGGACGACGCAACGAT
TTCGTGGCAGTGGAACTGGTCAATGGTCACATCCACTACACTTTCGATCT
GGGAGATGGTCCAGTGACGATGAGGGACAAGTCGCGCATCCACATGAACG
ACAACCGCTGGCATCAGGTCAGCATCAGGCGCCCGGGACCCAAGACGCAT
ACCCTAACCGTGGATGACTCCTTCGAGATTATCAGTCTGACTGGAAACAA
TATGCACTTGGAGCTGGCGGGTATCCTGTACATCGGAGGCGTCTTCAAGG
ACATGTACTCGAAGCTGCCGGCCTCGATCTCGTCGAGGTCCGGATTCGAA
GGCTGTCTGGCATCCCTGGACCTGGGCGATGCCTCTCCCTCGCTGACCAG
CGATGCAGTGGTGCCCAGCTCACTGGTGGTCAGTGGCTGCGAGGGACCCA
CCAAGTGTAGCCAGAATGCGTGCGCCAACCGAGGAAACTGCGTGCAGCAA
TGGAATGCCTATGCCTGCGAATGTGACATGACTTCCTACACAGGACCCAC
TTGCTATGATGAATCGATTGCCTACGAATTTGGCAACAACAAGGGCATGG
TGCAATACACATTCCCGGAAAACGCACAAGCTGACACGGAGGAGGATAAT
ATAGCACTGGGCTTCATAACCACCAGGCCGGATGCAGTGCTACTGCGGGT
GGAGAGTGCCACCACGCAGGACTATATGGAGCTGGAGATAGTGGAGGGCA
ACATCTTCATGGTGTACAACATTGGAAGCGTCGATTTGCCGCTGGGCGAG
ATCGGAACGAAGGTCAACGACAACGCCTACCATGTGGTGCGGTTCCAGCG
CAAGGGAGGCAATGCCACGCTCCAACTGGACGACTACAATGTGCAGGCAC
TGACGCCACAGAGCCACCACTCCACCGTGTTCAATACCATGTCCAACGTT
CAGGTCGGCGGCAAGTTCAGCCGGAACGGTCGCAATCGAATCGAGCGGCC
GTTCGCCGGCGTGATTGCCGGACTTTCGGTGAACAAGTTACGCATCTTGG
ACTTGGCCGTCGAACGCGACCCCCATATCACCATCCGTGGAGATGTTCAA
TTGGTAACTGGAGTATTAGATAGAAATGATCTGCAGAGAATGCAGCAGAC
GCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAG
CCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTC
GAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCAC
CAAGCAGACAACCACGTCCCAGCAGGGGAATAGCTTGAGTACCGGCGGGA
GCAGCAGCGGCGGTGTCATCACCAATGGCACGGAGCGTGCCTGCGACGAC
GAGGATTGCGTCCATGGATCCGGGGATTACGGCGAGACCACGGAACAGTT
CACCTCGACGAGCACCGCCCGCGGTTCAGAGTCCAACAACGAGATGGTGA
CCATTACCACCACGGGACGCAGCGATGTGACCACGGAGCAGCACCAAGGC
AGCAGTAGCAGCAGTAGCAGCGGCAGCACTCCGTCCTACGCAACCACGCA
GTCGAGCAGCAGCAGCAGCAGCGGCGGATCGGCAGCCAGCACGCCGGGTC
AGGTGAGCACGACCAGCAGCGTGGCCACATCGTCCACGCAACGGGCGACT
AGCAGCAGCACCAGCACGAGCAGCAGTACAACTTCGACGACCACGACAAC
GACCACCACTCAAGCCACACCGCCACCGGAGATCCGGAGTACGGTCACCG
AGCGGGAAACCACGCCCTATGATATTTATATAGCTGGTGGCGGCATGGGT
GGGTCCGGGCGAAATGATCACGATCGCATGCAGCTGCCGGACGAGCACCA
CCCACTGCCACCGTTGCCGCCACCCATTCCGCCGCAAGATCCACCTCCGT
ACGGACCTTATGGCGGCAACACGTACAACACCAACATGAACAACTACCGT
CCAAAGGGTAAGGGCGGCAGAATTAACTCGATCGAGGAGGAGCGTACCGC
CATGATAATCGGCATAGTGGCGGGCATACTGATCGCAGTGGTGCTGGTCA
TCCTGCTGGTCCTGTGGCTCAAGTCGAATGGCGATCGTGGCTACAAGACG
GAGAGCGAGAAGGCGGCCGCCTACGGTTCCCACAATCCGAATGCTGCACT
CCTGGGAAATACTAGCACCAATGGATCGTACCACCAGCAGCGGCAGCACC
ATATGCATGGTGGCGGAGGCGGTGGAGGTGCAGGGCAACAGCAGCATCAT
GCCCAACAGCAGATGCACAATGGGCACAATGGTAATGGAAATGGAGGAGG
CGGCGGCGGTGGCGGCATGATGTCCAGCGGAAGTGGGTCACTTGGCTATG
GCAGCGATGGGCGACCCCAGATGGCGGGCCTGGTGCAGCCGAAGGCCAAG
AAACGCGACTCCAAGGACGTCAAGGAGTGGTATGTGTAAAAGCTTTCTAG
ACCAT
BS31373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-1-RI | 5523 | CG7050-PI | 1..5523 | 17..5539 | 27615 | 100 | Plus |
| Nrx-1-RH | 5523 | CG7050-PH | 1..5523 | 17..5539 | 27615 | 100 | Plus |
| Nrx-1-RD | 5523 | CG7050-PD | 1..5523 | 17..5539 | 27615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-1-RI | 9643 | CG7050-RI | 1008..6530 | 17..5539 | 27615 | 100 | Plus |
| Nrx-1-RH | 9353 | CG7050-RH | 1008..6530 | 17..5539 | 27615 | 100 | Plus |
| Nrx-1-RD | 6628 | CG7050-RD | 1008..6530 | 17..5539 | 27615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22482844..22483856 | 4527..5539 | 5065 | 100 | Plus |
| 3R | 32079331 | 3R | 22470485..22471391 | 17..923 | 4535 | 100 | Plus |
| 3R | 32079331 | 3R | 22478287..22479045 | 2853..3611 | 3795 | 100 | Plus |
| 3R | 32079331 | 3R | 22471518..22471999 | 922..1403 | 2395 | 99.8 | Plus |
| 3R | 32079331 | 3R | 22472609..22472993 | 1829..2213 | 1925 | 100 | Plus |
| 3R | 32079331 | 3R | 22473068..22473439 | 2213..2584 | 1860 | 100 | Plus |
| 3R | 32079331 | 3R | 22479102..22479454 | 3611..3963 | 1765 | 100 | Plus |
| 3R | 32079331 | 3R | 22480793..22481126 | 4196..4529 | 1670 | 100 | Plus |
| 3R | 32079331 | 3R | 22472060..22472374 | 1399..1713 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 22479530..22479765 | 3963..4198 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 22478080..22478227 | 2706..2853 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 22473636..22473758 | 2583..2705 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 22472436..22472553 | 1711..1828 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:52:13 has no hits.
BS31373.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 18:25:44 Download gff for
BS31373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-1-RB | 646..6166 | 17..5537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:59 Download gff for
BS31373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-1-RB | 646..6166 | 17..5537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:34 Download gff for
BS31373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-1-RD | 1008..6528 | 17..5537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:34 Download gff for
BS31373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22478080..22478227 | 2706..2853 | 100 | -> | Plus |
| 3R | 22473069..22473439 | 2214..2584 | 100 | -> | Plus |
| 3R | 22473638..22473758 | 2585..2705 | 100 | -> | Plus |
| 3R | 22472609..22472993 | 1829..2213 | 100 | -> | Plus |
| 3R | 22470485..22471390 | 17..922 | 100 | -> | Plus |
| 3R | 22471519..22471995 | 923..1399 | 100 | -> | Plus |
| 3R | 22472061..22472372 | 1400..1711 | 100 | -> | Plus |
| 3R | 22472437..22472553 | 1712..1828 | 100 | -> | Plus |
| 3R | 22478288..22479045 | 2854..3611 | 100 | -> | Plus |
| 3R | 22479103..22479453 | 3612..3962 | 100 | -> | Plus |
| 3R | 22479530..22479765 | 3963..4198 | 100 | -> | Plus |
| 3R | 22480796..22481126 | 4199..4529 | 100 | -> | Plus |
| 3R | 22482847..22483854 | 4530..5537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:59 Download gff for
BS31373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18296207..18297112 | 17..922 | 100 | -> | Plus |
| arm_3R | 18297241..18297717 | 923..1399 | 100 | -> | Plus |
| arm_3R | 18297783..18298094 | 1400..1711 | 100 | -> | Plus |
| arm_3R | 18298159..18298275 | 1712..1828 | 100 | -> | Plus |
| arm_3R | 18298331..18298715 | 1829..2213 | 100 | -> | Plus |
| arm_3R | 18298791..18299161 | 2214..2584 | 100 | -> | Plus |
| arm_3R | 18299360..18299480 | 2585..2705 | 100 | -> | Plus |
| arm_3R | 18303802..18303949 | 2706..2853 | 100 | -> | Plus |
| arm_3R | 18304010..18304767 | 2854..3611 | 100 | -> | Plus |
| arm_3R | 18304825..18305175 | 3612..3962 | 100 | -> | Plus |
| arm_3R | 18305252..18305487 | 3963..4198 | 100 | -> | Plus |
| arm_3R | 18306518..18306848 | 4199..4529 | 100 | -> | Plus |
| arm_3R | 18308569..18309576 | 4530..5537 | 100 | | Plus |
BS31373.pep Sequence
Translation from 16 to 5538
> BS31373.pep
MKAPHSATYQDNYADAAMTARTRPSMDMDQQRNRNQAELRLLPAQRTSTS
AFESPDLRFNKARRRRRSEQVPPVVVEYRRSYRVLIVSALLVSLAASFVT
LSAGFQLDGSQNSFYTFRKWYTGLNGTLELEFKTEQPNGLVLYTDDGGTY
DFFELKLVEGALRLRYNLGGGAQIITVGRELHDGHWHKVQVLRNDEQTSL
IVDGVSQQRSTKGKEFQFGKFASNSDVYVGGMPNWYSSKLALLALPSVIF
EPRFRGAIRNLVYADQPGGSTRRQEIKQQRDIKCGDVPCDHGELPARERP
LRGVRGGNTTDACERNDPCQHGGICISTDSGPICECRNLEYDGQYCEKEK
APSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFYTGH
GTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQWHKVTVHRRI
QEISSITSFCRLVTVVDDVYTDHSHIAGKFTMLSSSRVYVGGAVNPRALL
GARVHTNFVGCLRKVEFSADTLNLNLIDLAKSGSKLIQVAGNLEYQCPSG
DPQDPVTFTTRESHLVLPPWETGKQSSISFKFRTKEPNGIIVLATGSKQP
RAKNPVLIAIELLNGHIYIHLDLGSGASKVRASRRRVDDGDWHDLILRRN
GRDAKVSVDGVWNDFRTPGDGTILELDGHMYLGGVGPAYNSVSWPAAIWT
ATLRQGFVGCLRDLVLSGKAIDIAAFARVQDSASVKPSCHVQANVCNGNP
CLNGGTCLEGWNRPICDCSATLYGGPTCGRELATLAFNGSQHMTIWLGNG
QGTKTQTEELVIRFKTSRPAGLLLLTSAESNSPDRLEIALVAGRVRASVR
LSDREKNLLAGQSVLNDNNWHTIRFSRRASNLRLQVDGAPPVRGMLSETI
LGRHSTMEIRSVHLGGLFHAEEEIQMTSTMPNFVGQMQGLVFNGQRYLDI
VKSLGPELSALPSATFKLTARFVNSPAGQPYHAATFRSKHSYVGLAMLKA
YNSISIDFRFKTVEPNGLLVFNGGRRNDFVAVELVNGHIHYTFDLGDGPV
TMRDKSRIHMNDNRWHQVSIRRPGPKTHTLTVDDSFEIISLTGNNMHLEL
AGILYIGGVFKDMYSKLPASISSRSGFEGCLASLDLGDASPSLTSDAVVP
SSLVVSGCEGPTKCSQNACANRGNCVQQWNAYACECDMTSYTGPTCYDES
IAYEFGNNKGMVQYTFPENAQADTEEDNIALGFITTRPDAVLLRVESATT
QDYMELEIVEGNIFMVYNIGSVDLPLGEIGTKVNDNAYHVVRFQRKGGNA
TLQLDDYNVQALTPQSHHSTVFNTMSNVQVGGKFSRNGRNRIERPFAGVI
AGLSVNKLRILDLAVERDPHITIRGDVQLVTGVLDRNDLQRMQQTPASGY
PGALDDLIFSGAGSGCRGDDEDECTPPFESGSGDDLITPVYVPPTKQTTT
SQQGNSLSTGGSSSGGVITNGTERACDDEDCVHGSGDYGETTEQFTSTST
ARGSESNNEMVTITTTGRSDVTTEQHQGSSSSSSSGSTPSYATTQSSSSS
SSGGSAASTPGQVSTTSSVATSSTQRATSSSTSTSSSTTSTTTTTTTTQA
TPPPEIRSTVTERETTPYDIYIAGGGMGGSGRNDHDRMQLPDEHHPLPPL
PPPIPPQDPPPYGPYGGNTYNTNMNNYRPKGKGGRINSIEEERTAMIIGI
VAGILIAVVLVILLVLWLKSNGDRGYKTESEKAAAYGSHNPNAALLGNTS
TNGSYHQQRQHHMHGGGGGGGAGQQQHHAQQQMHNGHNGNGNGGGGGGGG
MMSSGSGSLGYGSDGRPQMAGLVQPKAKKRDSKDVKEWYV*
BS31373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-1-PI | 1840 | CG7050-PI | 1..1840 | 1..1840 | 9682 | 100 | Plus |
| Nrx-1-PH | 1840 | CG7050-PH | 1..1840 | 1..1840 | 9682 | 100 | Plus |
| Nrx-1-PD | 1840 | CG7050-PD | 1..1840 | 1..1840 | 9682 | 100 | Plus |
| Nrx-1-PB | 1840 | CG7050-PB | 1..1840 | 1..1840 | 9682 | 100 | Plus |
| Nrx-1-PF | 1847 | CG7050-PF | 1..1847 | 1..1840 | 9664 | 99.6 | Plus |
