BS31389.complete Sequence
4229 bp assembled on 2012-09-14
GenBank Submission: KX806327
> BS31389.complete
GAAGTTATCAGTCGACATGATGAGCGATGTGGCGGGTGCGGCCGCTCCAG
GTGGTACACCAGGTCAACCGCAGCAGGAGCAGGAACAGTCTTTGGCGGAG
GCTGCTCCGCGTACACCGACGCTTGCGAATCCTCCTCCATCCTCACAGGA
GCTGGGTCGGACCCCCAACCAGGAGAGCCGCCATAACGCAAATTCCCACT
CCCGTCGATCGGGTGGTGGCCAGGTGCCATCGAAAGCCCAGGGTAACACC
GAGTCCCAGTTCTTCTTAGAGGATGGGGTTTTTCGCATTGATCGGCGCGG
TCGCGTCCATTTTGGCTTGGTAACCGCAACGACCGAGACCTATTCCTCCT
CCGAAGAGGAAGATGTCGATTCGCTGTCCAGGGGCGAGGTGCGTGTGGCC
TTCTATCCGGGTGGCAAGGAGATGGTGATGACGGAACAGTCGATTGGTCT
GGCGGATCGCACCCTAATGCCAGGCGATGTGGTGCGGAGGCGTCTGCCAG
GAGAAAACGTTTTGGCTGGCCAGGCGGGCTACGTGCGGGATGTCAATGTA
CGCGCCGATGTTATGGTAATGGGCTCCAGAATGGTCATTAAAAATGTGCC
CGCCGAGCGACTGCGTCCGATATCCGAGTGGAACCAATATGTGCCTCTCT
GCATGGACACCTGGATAGGCACCATCATAGACATTAATGAGTGCGCTGTG
CTCAAATCATCCAACGGTGCCCGTGTGGAAATCACCTCCAACGATTTCCA
CAAGTTTAAGGATGCTGTGTCCGAATGCGATCGCACGGTCTTCAATCCGA
ATGTCTTCTTTCCAGGAAACATTGTAATCGGTCGCATGCCGCCCCCGGAT
CGTGTCAAGAATCTGACCCCGGAGATTACCCATCCCTTAACTCGCAAGGG
TCGTGCTGTGTACACCGTGGAGTCTGTAGAAACTACATCAATTAATGTGG
ATTGGTCCTGCCGTGCAATCGGAAATGCCACGGGCAGCGATGACACAGAC
AGCGATCCTCTAAAGGAGCCAAGGTCCTTGATCAAGGGTGAGGAACTGCA
CAAAGTCAAGCGCCTTAGCCTCTATGAGTCCTACGAGCTGCAAATTCACG
ATCGATTCTACCTCAAATATTCAAAATGTGATCTATTAGTTAAATATGCC
GACTGGGAAAATGAACAAGCGGAGAAGTACATCCCCATTTTTCACGCCCA
GAAAAAAATGCAGCGCAAGGCCAGCAAATTGAACGCATCTGCTTCCACTA
GTGGAAATGCTCGCAGTGTACCAAAGTTCCGCCGCATGCCCAATAAAATC
AGCGGTATGCGACTGCCTCGACCGCCAAGCGACCAGACTCACAATGCTTG
CAAGTCGTCTAAGCGCAGCAAAGAGGATGTGTTGACATCGGAGGATGAGG
ATGAGTTCGAGGAGTTCATGCAGCCACTTGATCAATCGATGACTGCCGAA
AAAGAAGTGGAGGTTGCTGAGGACGCACTGCCTCCGTCCGCTGCTACCAC
AGCTGCAGCCGGTGTCGAAGTCCAGGCTCCCAGAATAACGATGCGATCTG
CTAAGAGGCGACAAGTAAAGAAAAAAATCCGCTCTGTCAAGAAAACAATT
TATTCGCCTTTTAATAAAAAGGAAACCACTCCCAAGGATGGCGATGAAAT
CGTAGTGGAAACGCTGGTCGTTTACAGCTCGGTGACGGTCGTCTGGCAGG
ATGGCACGGTGGAGTCAGGCGTTCACTCCACTCAGCTCTATCCTATTCAT
CATTTGGACAACCATGAATTCTTTCCCGGTGATTTTGTGACCAAAGCCAA
CGATATCAGTACGGGAGCCACAGACTACGGGGTAATTCAGTGCGTGGACC
ATGATGCACGCATAGCCAAGGTCATGTGGTTCAATATCTACACGAATATT
GATAATCCAATCCCTTTGTTCAAAGGATTGGAGGAGCTGAGCGTTTATGA
CATGAAGGATCACACCGATTACCAGTACCGACCCGGCACAGTGGTGATCC
GAGTGTCAAACTTCACGGGTGAGGATGTTAACTCTACTGCTGGTCAGGTG
ATCGACAACTACCCGAATGGTCGTGTGCGTGTTTGGTGGGCGAAGGGCCA
TATCACATTGTGCTACCCTCAGGATCTCTTTCAACCATTTGAACAAGATG
AACAAAATGAACAAGATCAAGATGTCTACGGATCAGATGGATCCGAAGAC
TCGTGGGAGACGGAATCGGAAAACAGCCACATATCGTCATCGGACAACGA
TGACGACATTCTTACGGGCATTGACAGAGCCACAGAGGCAATGAAAGTGC
TAGAAAAGATGTTCCGCGTTTTACATCCCAATCGGAAAGCGGAAGTGCTT
TACGATCTGCTGGATGTGTACAAAAATTGCCGGGCCTTAGACCGTTTGCT
AAATACTAAATTTTTCGACGAGTTTAATTTCAAAGGCATTGTGCGTTGCA
AGCCTATTACCTCTAAAGTTTGTTCTGACAGTGCCACCCATGAGCGCGCA
ACCCCAGAGACCCCAGAGACGTCGGCCGCCGTTCCCAAAGAGTCATCAAC
GCTCCAAGCTGAGTTGGAACCAGTTTTAATGGATCCGTCTGTTCAGTCAT
CATCAAGTCCTACTAAGCGAAAATCCTCTACGGAGATGGATGAAGTTCTA
TGCAAAAAGAGCACGGATGAGATCTCGGAGGAGCAAGATTACCAGGTGGA
GGTAGTAGAGGTAATAGAAGATCCGCCGCTAGTGAGGGAGTATCGCTGCA
AGTACAACGAAATGTTCGCCAACGCACGTAGAAGCATTGCAAAAGCGATT
GAAAATCGTACTAAGAATGATTCTGGCGTACACTCTCGCGGTGAAATCAC
CTCTGACGAGTCTAATAATCATCCAGACAGCGAAAATAAGTTGGACATAA
AGCATCCCACAATAAATGTAATGGATGATTTGGAAATTGAATTGGTTGCA
AGTGGAGATGCTGACGTCTGCGAAGTCTTCTGTTATTTGATCAAGTTTCA
AATGGCCAGAATTCGCAAGACGGTCGCTGTGACGTTGGGCAAGACAAATG
ACAATCCCAAGCAAGAGAAAGAGGATGTTAGCGATGCAGAGGAAGCTATT
GAGGCGGTCAGCCAGGAAGCGGAACTAGCCAATGATGGTGCTACCGAGTG
CAATACAATGGCTGAGGACGAAGCTATGGAAGAGCCATTGAATCTCAACG
CGCTTTCCGAGTCACTGCCGGCTATTGACCAGACAGGTCCCATGGCCTGC
TCCTCACCATCTTGGTCAATAATTCCAGACACGCCCTCCGTGGACGAGAA
TTGTTTCCAAGTGCTGCCCAATGCACCAGCTGCACATAATTTTATTAGCA
ACCTGATTACCCCGGCCAACAAGGCGCAGTATCAGCGAGCTGTGCAGCGG
GAATATCTTATGCTTAAGTCCTCGCTACCTAACGGAGTTGTGGTACGTGC
CTACGAGGATCGCATGGACCTAATGTCTGTAATGATGGTGGGTCCCAAGC
GCACGCCCTACCAGAACGCTCTATTCTTTTTCGACTTTCAATTTGGGCGC
GATTACCCGAAGAGCCCGCCGGTGTGCCACTACATCAGCTACTGCACGGA
TCGTCTCAATCCAAACTTGTACGAGGGTGGCAGGGTATGTGTGTCGCTAC
TTGGCACATGGATGGGACGCGACAACGAAGTTTGGTCGCCCAGCAGCACC
ATGCTCCAGGTGCTCGTCTCCATACAGGGACTCATACTGGTCGATGAGCC
CTACTATAATGAGGCGGGCTACGAAAAGCAAAGAGGCACCCAACTGGGCA
ATGAGAACTCTCGTGTCTACAACGAGATGGCCATCATAAAAATTGCCCAA
TCCACGGTGAAGCAGTTGACAAATCCGCCGCTCATCTTTCGCAATGAACT
TATTGAGCACTTCAAGGAGTTTGGCACCGAGCTGTATGCCCGCATGCGGG
CCTGGTCGGAGTATTCTCTTGAGGCACAGCGCCAAAATATAACCAAAATC
AAGGACATGCCTGTGGAGTACAAGGCGTCTTGCGAGCTACCCGAATTCCC
GCTGCTACCATGCAGTCGAGGCTTTTGCATAGCGGTCAAGCGCGTTTTGA
GCCAACTTCAAAGCGAGCTAACTGCCTTGGGTGCCAATCTGGTTACGGAT
GAACGTAATGGCATTGCGACTGGAATTGGCACTGCCCCGCGCGCTGCTCC
GGAGGAGATCTGAAAGCTTTCTAGACCAT
BS31389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10254-RA | 4197 | CG10254-PA | 1..4197 | 17..4213 | 20985 | 100 | Plus |
| CG10254-RB | 4197 | CG10254-PB | 1..4197 | 17..4213 | 20985 | 100 | Plus |
| CG10254-RC | 4140 | CG10254-PC | 1549..4140 | 1622..4213 | 12960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10254-RA | 4997 | CG10254-RA | 277..4475 | 15..4213 | 20995 | 100 | Plus |
| CG10254-RB | 4827 | CG10254-RB | 107..4305 | 15..4213 | 20995 | 100 | Plus |
| CG10254-RC | 4940 | CG10254-RC | 1827..4418 | 1622..4213 | 12960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23690075..23691047 | 3786..2814 | 4865 | 100 | Minus |
| 3R | 32079331 | 3R | 23691109..23692012 | 2815..1912 | 4520 | 100 | Minus |
| 3R | 32079331 | 3R | 23692071..23692814 | 1911..1168 | 3720 | 100 | Minus |
| 3R | 32079331 | 3R | 23694023..23694450 | 442..15 | 2140 | 100 | Minus |
| 3R | 32079331 | 3R | 23693599..23693862 | 705..442 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 23692889..23693148 | 1169..910 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 23689792..23690012 | 4004..3784 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 23689529..23689738 | 4213..4004 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 23693335..23693539 | 910..706 | 1025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:10:35 has no hits.
BS31389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-14 14:22:34 Download gff for
BS31389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10254-RA | 207..4402 | 17..4212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:45 Download gff for
BS31389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10254-RB | 109..4304 | 17..4212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:41 Download gff for
BS31389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10254-RB | 109..4304 | 17..4212 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:41 Download gff for
BS31389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23689530..23689737 | 4005..4212 | 100 | <- | Minus |
| 3R | 23689792..23690010 | 3786..4004 | 100 | <- | Minus |
| 3R | 23690076..23691045 | 2816..3785 | 100 | <- | Minus |
| 3R | 23691109..23692012 | 1912..2815 | 100 | <- | Minus |
| 3R | 23692071..23692812 | 1170..1911 | 100 | <- | Minus |
| 3R | 23692889..23693147 | 911..1169 | 100 | <- | Minus |
| 3R | 23693335..23693539 | 706..910 | 100 | <- | Minus |
| 3R | 23693599..23693861 | 443..705 | 100 | <- | Minus |
| 3R | 23694023..23694448 | 17..442 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:45 Download gff for
BS31389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19515252..19515459 | 4005..4212 | 100 | <- | Minus |
| arm_3R | 19515514..19515732 | 3786..4004 | 100 | <- | Minus |
| arm_3R | 19515798..19516767 | 2816..3785 | 100 | <- | Minus |
| arm_3R | 19516831..19517734 | 1912..2815 | 100 | <- | Minus |
| arm_3R | 19517793..19518534 | 1170..1911 | 100 | <- | Minus |
| arm_3R | 19518611..19518869 | 911..1169 | 100 | <- | Minus |
| arm_3R | 19519057..19519261 | 706..910 | 100 | <- | Minus |
| arm_3R | 19519321..19519583 | 443..705 | 100 | <- | Minus |
| arm_3R | 19519745..19520170 | 17..442 | 100 | | Minus |
BS31389.pep Sequence
Translation from 16 to 4212
> BS31389.pep
MMSDVAGAAAPGGTPGQPQQEQEQSLAEAAPRTPTLANPPPSSQELGRTP
NQESRHNANSHSRRSGGGQVPSKAQGNTESQFFLEDGVFRIDRRGRVHFG
LVTATTETYSSSEEEDVDSLSRGEVRVAFYPGGKEMVMTEQSIGLADRTL
MPGDVVRRRLPGENVLAGQAGYVRDVNVRADVMVMGSRMVIKNVPAERLR
PISEWNQYVPLCMDTWIGTIIDINECAVLKSSNGARVEITSNDFHKFKDA
VSECDRTVFNPNVFFPGNIVIGRMPPPDRVKNLTPEITHPLTRKGRAVYT
VESVETTSINVDWSCRAIGNATGSDDTDSDPLKEPRSLIKGEELHKVKRL
SLYESYELQIHDRFYLKYSKCDLLVKYADWENEQAEKYIPIFHAQKKMQR
KASKLNASASTSGNARSVPKFRRMPNKISGMRLPRPPSDQTHNACKSSKR
SKEDVLTSEDEDEFEEFMQPLDQSMTAEKEVEVAEDALPPSAATTAAAGV
EVQAPRITMRSAKRRQVKKKIRSVKKTIYSPFNKKETTPKDGDEIVVETL
VVYSSVTVVWQDGTVESGVHSTQLYPIHHLDNHEFFPGDFVTKANDISTG
ATDYGVIQCVDHDARIAKVMWFNIYTNIDNPIPLFKGLEELSVYDMKDHT
DYQYRPGTVVIRVSNFTGEDVNSTAGQVIDNYPNGRVRVWWAKGHITLCY
PQDLFQPFEQDEQNEQDQDVYGSDGSEDSWETESENSHISSSDNDDDILT
GIDRATEAMKVLEKMFRVLHPNRKAEVLYDLLDVYKNCRALDRLLNTKFF
DEFNFKGIVRCKPITSKVCSDSATHERATPETPETSAAVPKESSTLQAEL
EPVLMDPSVQSSSSPTKRKSSTEMDEVLCKKSTDEISEEQDYQVEVVEVI
EDPPLVREYRCKYNEMFANARRSIAKAIENRTKNDSGVHSRGEITSDESN
NHPDSENKLDIKHPTINVMDDLEIELVASGDADVCEVFCYLIKFQMARIR
KTVAVTLGKTNDNPKQEKEDVSDAEEAIEAVSQEAELANDGATECNTMAE
DEAMEEPLNLNALSESLPAIDQTGPMACSSPSWSIIPDTPSVDENCFQVL
PNAPAAHNFISNLITPANKAQYQRAVQREYLMLKSSLPNGVVVRAYEDRM
DLMSVMMVGPKRTPYQNALFFFDFQFGRDYPKSPPVCHYISYCTDRLNPN
LYEGGRVCVSLLGTWMGRDNEVWSPSSTMLQVLVSIQGLILVDEPYYNEA
GYEKQRGTQLGNENSRVYNEMAIIKIAQSTVKQLTNPPLIFRNELIEHFK
EFGTELYARMRAWSEYSLEAQRQNITKIKDMPVEYKASCELPEFPLLPCS
RGFCIAVKRVLSQLQSELTALGANLVTDERNGIATGIGTAPRAAPEEI*
BS31389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10254-PA | 1398 | CG10254-PA | 1..1398 | 1..1398 | 7295 | 100 | Plus |
| CG10254-PB | 1398 | CG10254-PB | 1..1398 | 1..1398 | 7295 | 100 | Plus |
| CG10254-PC | 1379 | CG10254-PC | 1..1379 | 1..1398 | 7170 | 98.6 | Plus |
| Bruce-PC | 4852 | CG6303-PC | 4482..4710 | 1093..1315 | 362 | 38.1 | Plus |
| Bruce-PE | 4865 | CG6303-PE | 4495..4723 | 1093..1315 | 362 | 38.1 | Plus |
