BS31393.complete Sequence
1163 bp assembled on 2012-07-13
GenBank Submission: KX805425
> BS31393.complete
GAAGTTATCAGTCGACATGGGAAGGCGATTGCCCAGCTTTTGGCTGCTGC
TCCTGCAGAGCGTGTGTTTCAGCCAGGCCAGCTTTTCGGAGCTAAACAAT
TCGGATCCCAAGTTCAGCGGTCCAATCAACAACTCAACAGTTCCCGTGGG
ACGGGATGCCCTACTCACGTGTGTTGTCCACGACCTGGTTAGCTTCAAGG
TGGCCTGGCTGCGAGTGGACACGCAGACGATACTGAGCATCCAGAACCAC
GTCATCACCAAGAACCATCGCATCTCCATCTCCCACACGGAGCATCGGAT
CTGGCAGCTAAAAATACGCGATGTTCAGGAATCGGATCGCGGATGGTACA
TGTGCCAAATCAACACGGATCCCATGAAGAGCCAAATGGGCTACCTGGAT
GTGGTGGTGCCGCCAGACATTGTAGACTATCAAACCAGTCAGGATGTGGT
TCGTTCCACGGGACAGAACGTAACACTCACTTGCAGTGCAACGGGAGTGC
CCATGCCCACCATCACCTGGCGTCGCGAGGAAGCGACTCCGATACTGATT
TCAGACGACGGCGATCGGGAAGTGTTCAGCGTGGAGGGTCAGAATCTCAC
CCTGTGGCAGGTGCAGCGCTCCCACATGGGCGCCTATCTCTGCATCGCCT
CCAACGGAGTGCCACCCACAGTGAGCAAACGCGTCATGCTGGTGGTGAAT
TTTGCGCCCACGATCTGGACACGCTACGATACCATCTACGTGGGCCTGGG
CCAGAAGCTGACGCTGGAGTGCATCACAGAATCGCAGCCGGCATCGGTGA
ACTTCTGGCTGAGGGATTCGCAATTGCTGCAAGGAGGTTCCTACGAGTCG
GTCTCAGTGGACCACGTCTTCCGGATCGTGATGCGGATCACCCTGCGTCC
AATAACGAAAAGAGATTTCGGAGAGTACATATGCAGGGCAAAGAATGCGA
TGGGTCAGACAGATCGGATTATAACCGTGCACCATAAGGCCAAGAAGCAT
GGACAGCACTCGCATCAAACTTCCTCCCGCGAAAGTCAGTTCATTGTCAT
CGAAGAATACATCGCAAATATGTCTGATAAGAGCTGCAGTTTCCAACCGC
TTTGGATAATGTTTCTATGTTTCGTCAATAAAGTGTCACTTTTGTGAAAG
CTTTCTAGACCAT
BS31393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11320-RB | 1131 | CG11320-PB | 1..1131 | 17..1147 | 5655 | 100 | Plus |
| CG14010-RB | 1353 | CG14010-PB | 364..451 | 344..431 | 290 | 88.6 | Plus |
| CG14010-RD | 1353 | CG14010-PD | 364..451 | 344..431 | 290 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11320-RB | 1327 | CG11320-RB | 191..1321 | 17..1147 | 5655 | 100 | Plus |
| CG14010-RB | 2988 | CG14010-RB | 748..835 | 344..431 | 290 | 88.6 | Plus |
| CG14010-RD | 2335 | CG14010-RD | 748..835 | 344..431 | 290 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6617760..6618116 | 701..345 | 1785 | 100 | Minus |
| 2L | 23513712 | 2L | 6617420..6617706 | 988..702 | 1420 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6618173..6618418 | 347..102 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 6617140..6617233 | 1147..1054 | 470 | 100 | Minus |
| 2L | 23513712 | 2L | 6621426..6621510 | 101..17 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 6617293..6617364 | 1055..984 | 360 | 100 | Minus |
| 2L | 23513712 | 2L | 5611028..5611090 | 407..345 | 255 | 93.7 | Minus |
| 2L | 23513712 | 2L | 5640292..5640349 | 402..345 | 215 | 91.4 | Minus |
| 2L | 23513712 | 2L | 5635667..5635733 | 690..624 | 185 | 85.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:45:11 has no hits.
BS31393.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-13 13:56:34 Download gff for
BS31393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11320-RB | 191..1320 | 17..1146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:31 Download gff for
BS31393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11320-RB | 191..1320 | 17..1146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:35 Download gff for
BS31393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11320-RB | 191..1320 | 17..1146 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:35 Download gff for
BS31393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6617141..6617231 | 1056..1146 | 100 | <- | Minus |
| 2L | 6617293..6617364 | 984..1055 | 100 | <- | Minus |
| 2L | 6617425..6617706 | 702..983 | 100 | <- | Minus |
| 2L | 6617760..6618115 | 346..701 | 100 | <- | Minus |
| 2L | 6618175..6618418 | 102..345 | 100 | <- | Minus |
| 2L | 6621426..6621510 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:31 Download gff for
BS31393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6617141..6617231 | 1056..1146 | 100 | <- | Minus |
| arm_2L | 6617293..6617364 | 984..1055 | 100 | <- | Minus |
| arm_2L | 6617425..6617706 | 702..983 | 100 | <- | Minus |
| arm_2L | 6617760..6618115 | 346..701 | 100 | <- | Minus |
| arm_2L | 6618175..6618418 | 102..345 | 100 | <- | Minus |
| arm_2L | 6621426..6621510 | 17..101 | 100 | | Minus |
BS31393.pep Sequence
Translation from 16 to 1146
> BS31393.pep
MGRRLPSFWLLLLQSVCFSQASFSELNNSDPKFSGPINNSTVPVGRDALL
TCVVHDLVSFKVAWLRVDTQTILSIQNHVITKNHRISISHTEHRIWQLKI
RDVQESDRGWYMCQINTDPMKSQMGYLDVVVPPDIVDYQTSQDVVRSTGQ
NVTLTCSATGVPMPTITWRREEATPILISDDGDREVFSVEGQNLTLWQVQ
RSHMGAYLCIASNGVPPTVSKRVMLVVNFAPTIWTRYDTIYVGLGQKLTL
ECITESQPASVNFWLRDSQLLQGGSYESVSVDHVFRIVMRITLRPITKRD
FGEYICRAKNAMGQTDRIITVHHKAKKHGQHSHQTSSRESQFIVIEEYIA
NMSDKSCSFQPLWIMFLCFVNKVSLL*
BS31393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11320-PB | 376 | CG11320-PB | 1..376 | 1..376 | 1981 | 100 | Plus |
| CG14010-PB | 450 | CG14010-PB | 42..335 | 30..322 | 892 | 57.8 | Plus |
| CG14010-PD | 450 | CG14010-PD | 42..335 | 30..322 | 892 | 57.8 | Plus |
| CG31646-PA | 606 | CG31646-PA | 130..421 | 31..323 | 871 | 56.5 | Plus |
| CG31814-PB | 643 | CG31814-PB | 74..363 | 31..316 | 737 | 49.8 | Plus |
