BS31409.complete Sequence
1058 bp assembled on 2012-09-04
GenBank Submission: KX805378
> BS31409.complete
GAAGTTATCAGTCGACATGTATCGCAATATACTCTGCCTGGTGCTGGGCC
TCATCATTGGCATTCAACTGACAGACTTCTTAGAGTACTTTCAGCTGACC
GATAGTCAGTTCGCCAGCACGTCCATTACGCAGCTGGAGGAAGGGGCCAG
CCAGCTGGCGACGGAGGAGGAACTGGCCTTGTGGCTCCATAACGAGACAC
GGGTACTCTGCATGGTGCTAACCCTGCCAAAGAATCACCAATCAAGAGTG
AGACGAGTTAAGGGCACATGGGGCAGGCGCTGCAACAAGCTGATCTTCAT
CAGCAGCCAGGAGGATCGGGAACTGGGCGTCATTGATGTGGGCGTGCCCG
AGGATCGAAACAACCTGTATCTCAAAATGAGGAAGGCCCTAGAGTATGTG
TACCGGAACCATGGAGAAGACTACGACTGGTTCCTCAAGGCAGATGATGA
CACCTTTGTGATAATGGAAAACCTGCGCTTCCTGCTCTATCCCTATGATC
CCGAGGCAGCGCTCTACTTTGGCCACAGATTCCGCACCACCTTTCCGCAG
GGCTACATGTCCGGAGGAGCTGGCTATGTGATGAGTCGGGATGCACTGCG
TCGGCTCAATCTCTTTGCCTTCAACAACAGCCAATTCTGCCCGATTAACA
ACAATTCAGAGGACAGGCAGATTGGCTTCTGCCTGCAAAATGTGGGAGTA
GTTGCAGGGGATTCGCGGGATGAGGAAGGCCGGGATCGGTTTCTGCCCTT
GTCTCTCAAATTTATGCTGCCTACCTTTCCCACCGACAATTGGCTGCCCA
AACTGACATTTTATGAACCAGTGAATGAAACTGGCTCGACTTCGGGAATC
AGCTTTCACTATGTCAAAATCCACGAGTTCGAAATGTATGAATACCTGCT
ATATCGATTGCACATTTTTGGAACTCCCTTGTCCCAGAGAACGCTGCCAC
CCCGACTGGGTCCCGATGAACTGCAGAATCAGCTGAATCAGTGGGCTCAA
GAAAATAGCACGAATTCAAACGCGTGGCTGAAACAAGAATAAAAGCTTTC
TAGACCAT
BS31409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34056-RA | 1026 | CG34056-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
| CG2975-RA | 1158 | CG2975-PA | 317..380 | 264..327 | 185 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34056-RA | 1303 | CG34056-RA | 160..1190 | 12..1042 | 5140 | 99.9 | Plus |
| CG2975-RA | 1884 | CG2975-RA | 843..906 | 264..327 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 896110..896551 | 12..453 | 2195 | 99.8 | Plus |
| 3L | 28110227 | 3L | 896608..896976 | 454..822 | 1845 | 100 | Plus |
| 3L | 28110227 | 3L | 897030..897251 | 821..1042 | 1110 | 100 | Plus |
| 2L | 23513712 | 2L | 2841313..2841376 | 264..327 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:55:47 has no hits.
BS31409.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-04 11:55:43 Download gff for
BS31409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34056-RA | 165..1182 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:22 Download gff for
BS31409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34056-RA | 165..1182 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:04 Download gff for
BS31409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34056-RA | 165..1182 | 17..1034 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:04 Download gff for
BS31409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 896608..896974 | 454..820 | 100 | -> | Plus |
| 3L | 897030..897243 | 821..1034 | 100 | | Plus |
| 3L | 896115..896551 | 17..453 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:22 Download gff for
BS31409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 896115..896551 | 17..453 | 100 | -> | Plus |
| arm_3L | 896608..896974 | 454..820 | 100 | -> | Plus |
| arm_3L | 897030..897243 | 821..1034 | 100 | | Plus |
BS31409.pep Sequence
Translation from 16 to 1041
> BS31409.pep
MYRNILCLVLGLIIGIQLTDFLEYFQLTDSQFASTSITQLEEGASQLATE
EELALWLHNETRVLCMVLTLPKNHQSRVRRVKGTWGRRCNKLIFISSQED
RELGVIDVGVPEDRNNLYLKMRKALEYVYRNHGEDYDWFLKADDDTFVIM
ENLRFLLYPYDPEAALYFGHRFRTTFPQGYMSGGAGYVMSRDALRRLNLF
AFNNSQFCPINNNSEDRQIGFCLQNVGVVAGDSRDEEGRDRFLPLSLKFM
LPTFPTDNWLPKLTFYEPVNETGSTSGISFHYVKIHEFEMYEYLLYRLHI
FGTPLSQRTLPPRLGPDELQNQLNQWAQENSTNSNAWLKQE*
BS31409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34056-PA | 341 | CG34056-PA | 1..341 | 1..341 | 1819 | 100 | Plus |
| CG34057-PA | 355 | CG34057-PA | 21..355 | 1..335 | 900 | 49.6 | Plus |
| CG34057-PB | 344 | CG34057-PB | 55..344 | 47..335 | 837 | 51.7 | Plus |
| C1GalTA-PA | 388 | CG9520-PA | 20..376 | 3..333 | 669 | 40.9 | Plus |
| C1GalTA-PC | 388 | CG9520-PC | 20..376 | 3..333 | 669 | 40.9 | Plus |
