BS31414.complete Sequence
3371 bp assembled on 2012-09-14
GenBank Submission: KX801681
> BS31414.complete
GAAGTTATCAGTCGACATGTCGGCGAAAGCAATCACCGAGGCCTCCGGCA
AGGACATCCTGAACCGCCATCTCAACACCCATGGCGCCGGCGCGGCCACT
TGCCGTTTTTCCACAGTAAATTCCACGACAGATTGGTCCAAGCTCGCCGT
TGACCATCCCTGGCTGCTGACCACGCCGCTGGTGTGCAAGCCCGATCAAC
TTATCAAGCGCCGTGGAAAGCTGGGACTAATTGGCGTCAAGAAGAACTTT
GAGCAGGTGAAGCAGTGGATTGGCGAGCGCCTCAACAAGGACCAGAAGAT
CGGAAATGCCGTGGGAAAGCTCAGGAACTTTATCATCGAACCTTTTGTGC
CCCACACCGATGCTGAGGAGATGTACGTGTGCATCTACTCGCACCGCGCC
GCAGACACCATTCTGTTCTACCACCAGGGTGGCGTGGATATTGGCGATGT
GGATGCTAAGGCCGTGAAGTTGGACGTACCTGTGAACTCTTCTCTGTCGT
TAGCCGACGTGAAGAGCAAGCTGTTGAAGGAGGTCAAGGACGCGGGCACC
AAGGAGCGCATTGCCAAGTTTGTCAGCGCCTTGTACACGACCTATGTAGA
CCTGTATTTCACATATCTGGAGATTAACCCTCTGGTGGTGACAGCCGACA
ATTTGTACATCTTGGATTTGGCGGCCAAGTTGGATTCGACAGCTGATTTC
ATCTGCCGTCCCAAATGGGGCGAGATTGACTATCCACCTCCGTTTGGTCG
AGATGCATATCCCGAGGAGGCCTACATCGCCGACTTGGACGCCAAGAGTG
GAGCTTCGCTGAAGCTGACGATCCTTAATCGTAATGGTCGTATCTGGACG
ATGGTGGCGGGCGGTGGCGCCAGTGTCATTTACTCGGACACCATCTGCGA
TTTGGGTGGAGCCTCCGAGCTGGCCAATTATGGCGAATACAGTGGGGCTC
CATCGGAACAGCAGACGTACGAGTACGCAAAGACGATTCTCAACCTGATG
ACCTCCTCGCCAAAGCATCCCGATGGCAAAGTGCTGATTACCGGAGGGGG
CATTGCGAACTTTACCAATGTGGCTGCGACCTTCCAAGGCATCATCACCG
CCCTGCGCGAATTCCAGCCGAAGCTAGTCGAGCACAATGTATCGATCTTT
GTGCGCCGCGCTGGACCCAACTATCAGGAGGGTCTTCGAAAGATGCGCGA
CTTTGGCAGCACCCTGGGCATCCCACTGCACGTTTTTGGACCTGAGACCC
ACATGACCGCTATTTGCGGAATGGCGCTGGGCAAGCGACCCATTCCCCAA
ACGGCAAGCGTTGAGTTCTCGACGGCCAACTTCCTGCTGCCCGGTGGACA
GCAGGCCCAGGCCGATCTCAAGGCGGCCAGCGATGCCTCTGAGGCGTTGG
GCTCCGGTTCCGCTCTGAGCCCGACCGCAGCTAAACCGATTAAACTACCA
CCTATCTCAGCAGATGAGGCCGACAGCGCGGGCATTTCCGGTGCTCAGCG
CAACGGATCGAGTCTTAACCGAAAGTTCTTCTCCAACACCACCAAGGCGA
TTGTGTGGGGAATGCAGCAGCGGGCGGTGCAGTCGATGCTCGACTTTGAT
TTTATCTGCAGACGCGATGAGCCTTCTGTGGTGGCAATGGTATATCCATT
CACCGGCGATCATAAGCAGAAGTACTACTGGGGTCACAAGGAAATTCTGA
TTCCTGTCTACAAGAAAATGTCGGACGCCATTCATAAGCACAAAGAGGTG
GACGTTATGGTCAACTTTGCTTCCATGCGCAGTGCGTACGAATCGACGCT
AGAGGTGCTCGAATTCCCCCAGATCCGGACGGTGGCCATCATCGCTGAAG
GTATTCCGGAAAACATGACTCGCAAGCTTATTATTGAGGCGGATAAGAAG
GGAGTGGCAATCATTGGACCCGCAACCGTGGGTGGCGTTAAGCCCGGTTG
CTTTAAGATTGGCAACACCGGCGGTATGCTGGATAACATCCTGCACTCGA
AACTGTACCGTCCAGGCAGTGTTGCGTATGTTTCGCGCTCCGGAGGAATG
TCCAATGAGCTGAACAATATTATCTCAAAGGCCACCGACGGCGTGATTGA
GGGCATTGCCATTGGAGGAGATAGGTACCCAGGCTCCACCTTTATGGATC
ACATTCTGCGGTATCAAGCCGATCCGGAAACCAAGCTGATTGTCCTTTTA
GGAGAGGTTGGTGGAACCGAGGAGTACGACGTTTGTGCCGCTCTGAAGGA
CGGACGTATTACCAAGCCTCTGGTGGCCTGGTGCATTGGTACCTGCGCCA
GCATGTTTACTTCGGAAGTCCAGTTTGGCCATGCCGGATCCTGCGCGAAC
TCCGACCGAGAGACGGCTACGGCCAAGAACAAGGGTCTGCGAGATGCCGG
CGCCTACGTTCCTGATTCGTTCGACACGCTGGGTGAACTCATCCACCACG
TGTACGGCGAGCTGGTTAAGACTGGTCGAGTAGTGCCGAAGGAGGAGGTG
CCACCACCAACTGTGCCCATGGATTATTCGTGGGCCCGCGAGCTGGGTCT
TATTCGCAAGCCCGCGTCATTCATGACGTCGATCTGCGACGAGCGTGGCC
AGGAGCTTATCTACGCAGGAATGCCGATCAGCGAGGTCCTTAGCAAGGAC
GTCGGCATTGGCGGTGTCATCTCACTGCTATGGTTCCAGCGCTGCCTGCC
TTCATACGTGTGCAAGTTCTTCGAGATGTGCCTGATGGTTACTGCGGATC
ACGGTCCCGCAGTTTCTGGAGCTCACAACACCATTGTGTGCGCCCGTGCT
GGCAAGGACCTGGTGTCCTCAGTCGTCAGCGGTCTTCTGACCATCGGGGA
TCGATTTGGAGGCGCCCTGGACGGATCGGCTCGACAGTTCTCTGAGGCAT
ACGACACCAACCTGCACCCAATGGAGTTCGTAAACAAGATGCGCAAAGAG
GGCAAGCTTATCCTGGGTATTGGCCACCGTGTAAAGTCCATTAATAACCC
CGATGTGCGCGTGAAGATCATTAAGGAATTCGTACTGGAGAACTTCCCTG
CGTGTCCACTTCTCAAATACGCCTTGGAGGTTGAGAAGATTACCACCAAC
AAGAAACCGAATCTTATCCTCAATGTGGACGGTGTGATAGCCACCGCATT
TGTGGACATGCTGCGTAACAGCGGCTCATTTACCAGTGAGGAAGCACAGG
AGTACATTAATGTCGGCGCAATCAACTCGTTGTTCGTTCTGGGCCGCAGC
ATAGGATTTATTGGCCATTACATGGATCAGAAACGTCTCAAACAGGGCCT
GTACCGTCATCCGTGGGACGACATCTCATACGTCATTCCCGAGCAGTACA
ACTAAAAGCTTTCTAGACCAT
BS31414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPCL-RE | 3339 | CG8322-PE | 1..3339 | 17..3355 | 16695 | 100 | Plus |
| ATPCL-RD | 3339 | CG8322-PD | 1..3339 | 17..3355 | 16695 | 100 | Plus |
| ATPCL-RG | 3291 | CG8322-PG | 1396..3291 | 1460..3355 | 9480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPCL-RE | 4146 | CG8322-RE | 110..3449 | 16..3355 | 16700 | 100 | Plus |
| ATPCL-RD | 3874 | CG8322-RD | 110..3449 | 16..3355 | 16700 | 100 | Plus |
| ATPCL-RG | 3916 | CG8322-RG | 1596..3491 | 1460..3355 | 9480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15994864..15996101 | 2846..1609 | 6190 | 100 | Minus |
| 2R | 25286936 | 2R | 15997276..15998003 | 1089..362 | 3640 | 100 | Minus |
| 2R | 25286936 | 2R | 15994462..15994802 | 3186..2846 | 1705 | 100 | Minus |
| 2R | 25286936 | 2R | 15996895..15997220 | 1412..1087 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 15996167..15996366 | 1611..1412 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 15998066..15998253 | 362..175 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 15994228..15994399 | 3355..3184 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 15999805..15999964 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:09:31 has no hits.
BS31414.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-14 10:36:28 Download gff for
BS31414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPCL-RE | 81..3417 | 17..3353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:32 Download gff for
BS31414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPCL-RD | 111..3447 | 17..3353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:22 Download gff for
BS31414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPCL-RD | 111..3447 | 17..3353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:22 Download gff for
BS31414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15994230..15994396 | 3187..3353 | 100 | <- | Minus |
| 2R | 15994462..15994802 | 2846..3186 | 100 | <- | Minus |
| 2R | 15994865..15996098 | 1612..2845 | 100 | <- | Minus |
| 2R | 15996167..15996365 | 1413..1611 | 100 | <- | Minus |
| 2R | 15996895..15997218 | 1089..1412 | 100 | <- | Minus |
| 2R | 15997277..15998003 | 362..1088 | 100 | <- | Minus |
| 2R | 15998067..15998252 | 176..361 | 100 | <- | Minus |
| 2R | 15999805..15999963 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:32 Download gff for
BS31414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11881735..11881901 | 3187..3353 | 100 | <- | Minus |
| arm_2R | 11881967..11882307 | 2846..3186 | 100 | <- | Minus |
| arm_2R | 11882370..11883603 | 1612..2845 | 100 | <- | Minus |
| arm_2R | 11883672..11883870 | 1413..1611 | 100 | <- | Minus |
| arm_2R | 11884400..11884723 | 1089..1412 | 100 | <- | Minus |
| arm_2R | 11884782..11885508 | 362..1088 | 100 | <- | Minus |
| arm_2R | 11885572..11885757 | 176..361 | 100 | <- | Minus |
| arm_2R | 11887310..11887468 | 17..175 | 100 | | Minus |
BS31414.pep Sequence
Translation from 16 to 3354
> BS31414.pep
MSAKAITEASGKDILNRHLNTHGAGAATCRFSTVNSTTDWSKLAVDHPWL
LTTPLVCKPDQLIKRRGKLGLIGVKKNFEQVKQWIGERLNKDQKIGNAVG
KLRNFIIEPFVPHTDAEEMYVCIYSHRAADTILFYHQGGVDIGDVDAKAV
KLDVPVNSSLSLADVKSKLLKEVKDAGTKERIAKFVSALYTTYVDLYFTY
LEINPLVVTADNLYILDLAAKLDSTADFICRPKWGEIDYPPPFGRDAYPE
EAYIADLDAKSGASLKLTILNRNGRIWTMVAGGGASVIYSDTICDLGGAS
ELANYGEYSGAPSEQQTYEYAKTILNLMTSSPKHPDGKVLITGGGIANFT
NVAATFQGIITALREFQPKLVEHNVSIFVRRAGPNYQEGLRKMRDFGSTL
GIPLHVFGPETHMTAICGMALGKRPIPQTASVEFSTANFLLPGGQQAQAD
LKAASDASEALGSGSALSPTAAKPIKLPPISADEADSAGISGAQRNGSSL
NRKFFSNTTKAIVWGMQQRAVQSMLDFDFICRRDEPSVVAMVYPFTGDHK
QKYYWGHKEILIPVYKKMSDAIHKHKEVDVMVNFASMRSAYESTLEVLEF
PQIRTVAIIAEGIPENMTRKLIIEADKKGVAIIGPATVGGVKPGCFKIGN
TGGMLDNILHSKLYRPGSVAYVSRSGGMSNELNNIISKATDGVIEGIAIG
GDRYPGSTFMDHILRYQADPETKLIVLLGEVGGTEEYDVCAALKDGRITK
PLVAWCIGTCASMFTSEVQFGHAGSCANSDRETATAKNKGLRDAGAYVPD
SFDTLGELIHHVYGELVKTGRVVPKEEVPPPTVPMDYSWARELGLIRKPA
SFMTSICDERGQELIYAGMPISEVLSKDVGIGGVISLLWFQRCLPSYVCK
FFEMCLMVTADHGPAVSGAHNTIVCARAGKDLVSSVVSGLLTIGDRFGGA
LDGSARQFSEAYDTNLHPMEFVNKMRKEGKLILGIGHRVKSINNPDVRVK
IIKEFVLENFPACPLLKYALEVEKITTNKKPNLILNVDGVIATAFVDMLR
NSGSFTSEEAQEYINVGAINSLFVLGRSIGFIGHYMDQKRLKQGLYRHPW
DDISYVIPEQYN*
BS31414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPCL-PE | 1112 | CG8322-PE | 1..1112 | 1..1112 | 5785 | 100 | Plus |
| ATPCL-PD | 1112 | CG8322-PD | 1..1112 | 1..1112 | 5785 | 100 | Plus |
| ATPCL-PG | 1096 | CG8322-PG | 1..1096 | 1..1112 | 5679 | 98.6 | Plus |
| ATPCL-PF | 1095 | CG8322-PF | 1..1095 | 1..1112 | 5674 | 98.5 | Plus |
| CG6255-PA | 342 | CG6255-PA | 82..305 | 563..795 | 214 | 30 | Plus |
