BS31423.complete Sequence
3599 bp assembled on 2012-09-14
GenBank Submission: KX804588
> BS31423.complete
GAAGTTATCAGTCGACATGGCCGATTGTTCATATGTGAGATGTCAGCAAG
AGCGTCGGCTCATCAAAAAGAAGCTATTGAAATGGTCCACAGATATGCTG
CATATTGTGGCCCTAGAACGCGTTGCTGAAGAATGTATGGGTCGCAGGCA
ATGGAAACATTATCAAGACAAACTGACGTGCAGCCACTTGAATATCGAGG
AGCAACAGCCCATAGCAATAGCCGGTTCCGAGGACGAGCCATCGCAATAC
AACCACAGCAGCAAGGAGATCAGCCAGAGCAATCCCAACCACTGTAAGAC
AGAGAACCACCGTCTGGAGCAGCAACACAACGGCAGCCAGCTATTGGAAG
AAGAAGATTCTGAGAACAACCAAACATCACACGATTCATCACGTACACCA
ACACCGGGAGCCACCAGTACACCATCACCACCGCCAGAACCCATCGATTG
GAGACCGTCGGCCAAGTGCAACTTCTGTGTTAACGGTCGCCTGCTAACGG
TTAACGCCCAGGGCAAGTTGGTGGCCGAGTCAGCAGCAACTGCCACTAGT
AGTAGCACTAGTAATAGTCACATTCATCAGCACGACAGTGACAGCAACTC
GAGTGCATCACTGCCCCACCACATCAGCAGCAGCAGCAGCAGCAACAACA
ATAGCAGTGGCAACAGGGCACGCCACATTGCTGCTGCAAGTGCAAGAGCA
ACACCAGCAGCGGCCACACCCGCCAACTCCCTTGAACTCTACAAGCTGCT
GACCCAGCGGGCAGCCAAAATGACATCGATGGACTCGATGGCCGCCCAGC
TGGCGCAATTCTCACTGCTGGCCGACTTCAATCTGATCAACTCGCTGGCC
AGCCAACAGCAGCAGCAGCAGCAGCAACAGATCGCTAGTGCGGTAACGCC
AACTACCTCAGAAGTATCTGCAGCCGCAATCAGTCCCGCACTCAAAGATA
CACCCAGTCCCAGTGTGGATGCACCGCTCGATCTTAGCAGCAAACCATCG
CCGAACTCATCGATTAGCGGCGATGTGAAGTCCGTCAGAGCCTGTGCCAC
GCCCACGCCGTCGGGAAGAAGGGCGTACAGTGAAGAGGATCTGAGCCGGG
CCCTACAGGATGTGGTGGCCAACAAGCTAGATGCCCGGAAATCGGCTAGC
CAGCACCATGAGCAGCGCTCCATTCTGGACAACCGGCTGTTCAAGATGAA
ACACCATGACCAGGAGCAGGATCATGATGGCGACGAGCTCGAGGACTCCA
ACGATGATGCTGAGGCGGAAGTGGACAGCAATGCGTCGACACCGGTGTAT
CCGGCAGAGTTTGCAAGGGCACAACTGCGCAAACTGAGCCACCTGTCCGA
GCACAATGGCAGCGATCTGGGCGAGGATGTGGATCGTGGATCGCCGAAAA
TGGGGCGACATCCGGCCTGTGGCAATGCCAGTGCCAATCAGGGCGCACCG
CCATCCATTCCGCTGGATGCCAATGTCCTGCTGCACACTCTGATGCTGGC
TGCTGGGATTGGTGCAATGCCGAAGCTGGATGAAACGCAAACGGTGGGCG
ACTTTATCAAGGGTCTGCTGGTGGCCAACAGTGGTGGCATAATGAACGAG
GGACTGCTAAATCTGCTGTCCGCCAGTCAGGAGAACAGCAATGGCAATGC
CTCGCTGCTGCTGCAACAGCAACAGCATCAGCAACACCATCAGCAACACC
ATCAGCAGCAGCAGCAGCAGCAACATGTCGCCGCCTACCGGCATCGCCTG
CCCAAGTCGGAGACTCCGGAAACGAACTCCTCGTTGGATCCGAACGATGC
CAGCGAGGATCCCATACTGAAGATTCCGTCCTTCAAGGTCAGCGGTCCGG
CCAGCAGCAGCAGCCTGTCGCCGGGCGGACTGGTTGGTGGTCACCACCAT
CCGCTGAACAACAACAACAGCCTCAGCATCAGCAACAACAGCAACCACAG
CAGCAACAGCCATCGGAACGGCAGCAATCGCAGCCCGCATTCCGCATCGC
CCATGCTGGCCGCGGCCGTGGCCCAAGGTGGCTACTCCGCCGGCAACAGT
TTGCTGACCTCATCCTCGTCTAGCATACAGAAGATGATGGCCAGCAATAT
CCAGCGCCAGATCAACGAACAGAGTGGCCAGGAGAGTCTCAGGAACGGAA
ATGTTAGCGATTGCAGCAGCAACAATGGCGGCTCCTCCTCGCTGGGATAC
AAGAAGCCGAGCATTTCGGTGGCCAAGATCATTGGCGGAACGGACACCTC
ACGGTTCGGAGCCTCGCCCAATCTGCTGTCCCAACAGCACCATTCGGCTC
ACCACCTGACCCACCAGCAACAGCAGCAACAGCTGAGCGCCCAGGAGGCA
TTGGGCAAGGGAACGCGACCAAAGAGGGGCAAGTATCGCAACTATGACCG
CGACAGTTTGGTGGAGGCGGTCAAGGCGGTGCAGAGAGGTGAAATGTCGG
TTCATCGAGCGGGTAGCTACTACGGCGTACCGCATTCCACGCTGGAGTAC
AAGGTCAAGGAACGTCACCTGATGCGACCGCGCAAGCGAGAGCCCAAGCC
GCAGCCCGATCTCGTCGGCCTGACCGGACCAGCCAACAAGCTGCAGCTGG
ACAAACTGAAGGCGGGACCACATGGTGGCTCCAAGCTGAGCAATGCCCTC
AAGAACCAAAACAATCAGGCGGCTGCGGCGGCGGCGGCGGCAGCAGCAGC
AGCGGCCGCTGCCACGCCCAACGGCCTGAAACTGCCCCTTTTCGAGGCGG
GTCCACAGGCGTTATCCTTTCAGCCGAACATGTTCTGGCCCCAGACGAAC
GCCACGAATGCCTACGGCCTGGACTTCAATCGCATCACGGAGGCGATGCG
GAATCCCCAGGCCTCCAATCACCACGGCCTGATGAAGAGTGCCCAGGACA
TGGTGGAGAACGTGTACGATGGCATCATCAGGAAGACGCTGCAGGCGAGC
GAGGGCAATGGCAGTGCGGCGGGTAATGGCAGCAACGGTAGCAATGGCAA
CGGGCATGGGCACGGGCATGGCCATGGACACGCCCTGCTCGATCAGCTGC
TGGTGAAGAAGACCCCCTTGCCGTTCACCAACCATCGGAACAATGACTAC
GCCGCCACCTGTTCGAGTGCCAGCGGGGAGAGCGTAAAGCGGTCGGGCAG
TCCCATGGGCAACTATGCAGACATCAAGCGGGAGCGCCTGAGCGCCGACA
GCGGCGGCAGCAGCGATGAGGAGCACTCGGCCAGCCACATCAACAACAAC
AACAGCGATTTGGCGCACAACAAGAACAAGAGCGGCGGCGGCGGCGGCGG
CGGCGGCAATGGCCAGACCAATGGGAACGGCAGGAGCAGCCGGATGACGT
CGCGGGATGATTCCGAAACGGATGCCAGCAGCTTGAAGAGCGGCGAAAGT
GGCGGCCAGCAAAACCACAAAATGATGGATCTCAATGGCGGCAGCAGCAG
CAGCAGTCACATCAAGTGCGAATCGGAGGCGGCCACCGGACATCACAGTC
CTGGACACCACACCACGTCCATACTGCACGAGAAGCTGGCCCAGATCAAG
GCCGAGCAAGTGGACCAGGCGGATCAGTTATAGAAGCTTTCTAGACCAT
BS31423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip93F-RB | 3567 | CG18389-PB | 1..3567 | 17..3583 | 17835 | 100 | Plus |
| Eip93F-RC | 3567 | CG18389-PC | 26..3502 | 111..3587 | 17370 | 100 | Plus |
| Eip93F-RA | 3498 | CG18389-PA | 26..3498 | 111..3583 | 17365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip93F-RB | 4438 | CG18389-RB | 573..4143 | 17..3587 | 17840 | 100 | Plus |
| Eip93F-RC | 12020 | CG18389-RC | 513..3989 | 111..3587 | 17370 | 100 | Plus |
| Eip93F-RA | 12020 | CG18389-RA | 513..3989 | 111..3587 | 17370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22003957..22006508 | 1036..3587 | 12745 | 100 | Plus |
| 3R | 32079331 | 3R | 21996328..21996787 | 579..1038 | 2300 | 100 | Plus |
| 3R | 32079331 | 3R | 21995519..21995771 | 110..362 | 1265 | 100 | Plus |
| 3R | 32079331 | 3R | 21995837..21996055 | 362..580 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 21960814..21960907 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2552 | 531..728 | 285 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2979 | 1834..1984 | 194 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6865 | 1892..1983 | 187 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2469 | 1891..1984 | 184 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2511 | 3177..3340 | 177 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2295..2521 | 3223..3464 | 175 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6887 | 1892..1984 | 174 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2483 | 3155..3333 | 171 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2476 | 3293..3464 | 156 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6911 | 1892..1984 | 154 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5597..5668 | 2260..2331 | 126 | 63.9 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 621..755 | 3181..3313 | 121 | 56.6 | Plus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 1530..1558 | 2305..2333 | 118 | 89.7 | Plus |
BS31423.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-14 10:36:22 Download gff for
BS31423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip93F-RB | 573..4139 | 17..3583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:21 Download gff for
BS31423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip93F-RB | 573..4139 | 17..3583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:58 Download gff for
BS31423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip93F-RB | 573..4139 | 17..3583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:58 Download gff for
BS31423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21960814..21960907 | 17..110 | 100 | -> | Plus |
| 3R | 21995520..21995771 | 111..362 | 100 | -> | Plus |
| 3R | 21995838..21996055 | 363..580 | 100 | -> | Plus |
| 3R | 21996330..21996787 | 581..1038 | 100 | -> | Plus |
| 3R | 22003960..22006504 | 1039..3583 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:21 Download gff for
BS31423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17821242..17821493 | 111..362 | 100 | -> | Plus |
| arm_3R | 17821560..17821777 | 363..580 | 100 | -> | Plus |
| arm_3R | 17786536..17786629 | 17..110 | 100 | -> | Plus |
| arm_3R | 17822052..17822509 | 581..1038 | 100 | -> | Plus |
| arm_3R | 17829682..17832226 | 1039..3583 | 100 | | Plus |
BS31423.pep Sequence
Translation from 16 to 3582
> BS31423.pep
MADCSYVRCQQERRLIKKKLLKWSTDMLHIVALERVAEECMGRRQWKHYQ
DKLTCSHLNIEEQQPIAIAGSEDEPSQYNHSSKEISQSNPNHCKTENHRL
EQQHNGSQLLEEEDSENNQTSHDSSRTPTPGATSTPSPPPEPIDWRPSAK
CNFCVNGRLLTVNAQGKLVAESAATATSSSTSNSHIHQHDSDSNSSASLP
HHISSSSSSNNNSSGNRARHIAAASARATPAAATPANSLELYKLLTQRAA
KMTSMDSMAAQLAQFSLLADFNLINSLASQQQQQQQQQIASAVTPTTSEV
SAAAISPALKDTPSPSVDAPLDLSSKPSPNSSISGDVKSVRACATPTPSG
RRAYSEEDLSRALQDVVANKLDARKSASQHHEQRSILDNRLFKMKHHDQE
QDHDGDELEDSNDDAEAEVDSNASTPVYPAEFARAQLRKLSHLSEHNGSD
LGEDVDRGSPKMGRHPACGNASANQGAPPSIPLDANVLLHTLMLAAGIGA
MPKLDETQTVGDFIKGLLVANSGGIMNEGLLNLLSASQENSNGNASLLLQ
QQQHQQHHQQHHQQQQQQQHVAAYRHRLPKSETPETNSSLDPNDASEDPI
LKIPSFKVSGPASSSSLSPGGLVGGHHHPLNNNNSLSISNNSNHSSNSHR
NGSNRSPHSASPMLAAAVAQGGYSAGNSLLTSSSSSIQKMMASNIQRQIN
EQSGQESLRNGNVSDCSSNNGGSSSLGYKKPSISVAKIIGGTDTSRFGAS
PNLLSQQHHSAHHLTHQQQQQQLSAQEALGKGTRPKRGKYRNYDRDSLVE
AVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPDLV
GLTGPANKLQLDKLKAGPHGGSKLSNALKNQNNQAAAAAAAAAAAAAAAT
PNGLKLPLFEAGPQALSFQPNMFWPQTNATNAYGLDFNRITEAMRNPQAS
NHHGLMKSAQDMVENVYDGIIRKTLQASEGNGSAAGNGSNGSNGNGHGHG
HGHGHALLDQLLVKKTPLPFTNHRNNDYAATCSSASGESVKRSGSPMGNY
ADIKRERLSADSGGSSDEEHSASHINNNNSDLAHNKNKSGGGGGGGGNGQ
TNGNGRSSRMTSRDDSETDASSLKSGESGGQQNHKMMDLNGGSSSSSHIK
CESEAATGHHSPGHHTTSILHEKLAQIKAEQVDQADQL*
BS31423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip93F-PB | 1188 | CG18389-PB | 1..1188 | 1..1188 | 6153 | 100 | Plus |
| Eip93F-PC | 1188 | CG18389-PC | 8..1165 | 31..1188 | 5988 | 99.8 | Plus |
| Eip93F-PA | 1165 | CG18389-PA | 8..1165 | 31..1188 | 5988 | 99.8 | Plus |
