BS31461.complete Sequence
3911 bp assembled on 2012-09-14
GenBank Submission: KX804974
> BS31461.complete
GAAGTTATCAGTCGACATGAACACTTGTTTGGAAGGCAACTGCGAGTCGC
TGCCCAACTATGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGC
GATTTCCCCGATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCA
GTCTCGTCAGCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAAC
CGTTTGTGCTCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTAT
CCCTATGACAACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGAC
TCCGGATGATCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACC
ATCCGATTATGAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGT
ATCACCAACGGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTT
TAACTATGCGTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCT
GCAAGTATCCGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAG
GCATCCCTGCTGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCT
GGTGACCGATGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGG
CTGGACTAGAGGAGAAACCCATGCGCACTTCCAAACGTGGCGAATACTGG
AGGCTTTTGACCCCGGGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTA
CCAGACCAGTGCCCCGCAACAGGTCCGGGTGACCAACGATAACCAGGAGG
CCTTGCGCCTGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGC
AACTTCCGGAAAGTAAAGGTCGAGCGCTCTGAGCCTCCACAGAAGCTCAA
GAAGCAGTTCAATGGGTTCTTGACCCCGACTAAATACGAACACCACAACT
TTACGGCAATGGAGAGCTATCTGAGGGCGATTAGCAGCAGCTATCCTTCC
CTTACACGCCTCTACAGCATCGGTAAAAGCGTCCAGGGTCGTGATCTTTG
GGTGCTTGAGATTTTTGCCACGCCGGGTTCTCATGTCCCGGGGGTTCCGG
AGTTCAAATATGTGGCAAACATGCATGGCAACGAGGTGGTGGGCAAGGAA
TTGCTTCTAATCCTCACCAAATATATGCTGGAACGCTATGGCAATGATGA
CAGGATTACCAAGCTGGTGAATGGCACCCGTATGCATTTTTTGTACAGCA
TGAACCCCGATGGGTATGAGATCTCCATCGAGGGCGACAGAACCGGCGGA
GTTGGAAGAGCGAATGCCCATGGAATTGATTTGAACAGAAACTTCCCCGA
TCAATATGGCACGGACCGGTTCAATAAGGTGACAGAGCCAGAGGTGGCTG
CCGTCATGAACTGGACACTGTCGCTGCCGTTTGTTTTGTCCGCCAATCTC
CATGGGGGCTCCTTGGTGGCCAACTACCCCTTCGACGATAACGAAAATGA
TTTTAATGATCCGTTTATGAGACTCCGCAATTCTAGTATCAATGGCCGCA
AGCCAAATCCCACCGAGGATAATGCTCTTTTCAAACACCTCGCCGGGATT
TATTCAAACGCACACCCCACTATGTACCTGGGCCAGCCATGTGAGCTCTT
CCAGAATGAATTCTTCCCTGATGGCATTACGAATGGTGCTCAATGGTATA
GTGTTACTGGGGGAATGCAGGACTGGAACTATGTGCGGGCTGGATGCCTG
GAGCTAACCATCGAAATGGGTTGCGATAAGTTTCCCAAGGCCGCCGAGCT
TTCGCGATACTGGGAGGATCATCGCGAGCCTCTGCTACAGTTTATCGAGC
AAGTGCATTGCGGCATTCATGGATTTGTGCATAGCACCATTGGTACGCCG
ATTGCGGGAGCTGTTGTTCGTTTGGATGGAGCCAATCATTCGACCTACAG
TCAAGTCTTCGGTGACTATTGGAAGCTAGCGCTGCCTGGTCGACACAATC
TCACTGTGTTGGGGGACAACTATGCGCCACTACGAATGGAAGTTGAAGTA
CCCGACGTCCACCCCTTCGAAATGCGAATGGATATCACCCTCATGCCAGA
CGATCCCCAGCATTGGGCATCCGCCAATGACTTTAGGATTATTGAAAACG
TAGTCAACACAAGGTATCACACTAACCCTCAAGTTCGCGCACGCCTGGCG
GAGCTGGAGAACCAAAATGGACAGATTGCCAGCTTTGGATATGCCGATTC
TGAATTTGGCACAATCTTCAATTACCTCAAAATGACATCTGATATTGGCG
AGCCCGAGGAACACAAGTACAAGCTGTTGGTGGTCAGTTCCCTATACGAT
ACAACGGCTCCTCTGGGAAGGGAAATTTTGCTCAACCTGATACGACACTT
GGTCGAAGGATTTAAGCTGCAGGACACGTCTGTAGTCGAGTTGCTTAAAC
GAAGTGTTATCTACTTCCTGCCGCAGACTAGCAAGTTCCAAAATGTCTTT
GACATGTACAACAGCAACACCTCCATTTGCGACCCAGTCCTGGGGGATGA
GTTAGCAGAGCGCATTCTTGGCCCGGAGACAGACCAGGCCAAGGACGTAT
TCCTGCAATTTTTGCGTAGCGAACGCTTTGATTTGATGCTTACCTTTGGA
GCAGGCAACTCCGACTTGAACTATCCGAAAGGGGACTCGGTGCTAGTGAA
GTTTGCCCACAGAATGCAGCGAACGGAGTTCAACTACTCGCCCCTGCAGT
GCCCTCCATCGGCCACGAGACAGCTCCACCGGGAGACCACCGAGAGATTG
ACCAATATGATGTACCGCATATACAATTTGCCCGTTTACACCTTGGGCAT
TTCCTGCTGCCGCATGCCGCACCAAAAGAAAATCGCTTCCGTTTGGCGCA
AAAACATCGATAAGATTAAGAACTTTTTGGCTCTAGTGAAAACCGGAGTA
AGTGGCTTGGTGCAGAACGATAAAGGACAACCATTGAGGGAGGCCTATGT
CCGATTGTTGGAGCACGATAGAATCATTAATGTTACCAAGAATGTGGCGA
GATTCCAGTTGATGCTGCCCCATGGTCTTTATGGCTTGGAGGTAACTGCT
CCCAACTACGAGTCGCAAATGATTAAGGTGGACGTAGAAGATGGTCGAGT
CACGGAATTGGGCATTATACGCATGCATCCATTCACGTTGATTCGTGGCG
TTGTCCTGGAGCTGCCAAATAACGATAACAGAGCCACCACTAGCATTGCA
GGAGTGGTGCTGGATGAGAGCAACCACCCAGTGCGGAACGCCAAGGTCTC
GGTGGTGGGGCAGACTCAATTGAGAAACTTTACAGGCAGCATGGGACAGT
ATCGTATATCGGCGGTACCCTTAGGCACCATCACTCTAAAAGTAGAGGCA
CCGCGGCATCTGGAGGCCACCCGACAAATGCACCTGATTCAGGGCGGCTT
GGCCACAGAGAACGTGGTCTTTCACCTAAAAGTTAACGAGCATGTCTTTG
GATTGCCTCGCTTTTTGTTCATTTTGTGCGCCAGCGTTCTGATCATTGTT
GGTGTCATCGTCTGTGTGCTATGTGCCCAGTTTTGGTTCTATCGACGCCA
TCGGGGGGATAAGCCTTATTATAACTTCTCACTGCTGCCGCAGAGGGGTA
AGGAGCAGTTTGGCCTTGAGGACGATGATGGGGGTGATGATGGGGAAACG
GAGCTCTTTCGATCTCCCATCAAACGCGGCATGACCATACAGCCGTACTT
TGATGAGGAGCAGCTGGAGCGGATCCTGCACACGGATGACGATGACGACG
ACGGACCGCACATGGAGCCAGAACTTGATGTGGCTGACGATAGCGAAGAC
GACATAGTGATGTTGCATAACAACGGGAACAAGAGACGGCACTAGAAGCT
TTCTAGACCAT
BS31461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RI | 3879 | CG4122-PI | 1..3879 | 17..3895 | 19395 | 100 | Plus |
| svr-RN | 4320 | CG4122-PN | 456..4320 | 31..3895 | 19325 | 100 | Plus |
| svr-RH | 4314 | CG4122-PH | 450..4314 | 31..3895 | 19325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RI | 5267 | CG4122-RI | 1003..4882 | 17..3896 | 19400 | 100 | Plus |
| svr-RN | 4986 | CG4122-RN | 651..4516 | 31..3896 | 19330 | 100 | Plus |
| svr-RH | 5842 | CG4122-RH | 944..4809 | 31..3896 | 19330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 504914..506242 | 965..2293 | 6645 | 100 | Plus |
| X | 23542271 | X | 506592..507807 | 2511..3726 | 6050 | 99.8 | Plus |
| X | 23542271 | X | 502287..502766 | 268..747 | 2400 | 100 | Plus |
| X | 23542271 | X | 501984..502221 | 31..268 | 1190 | 100 | Plus |
| X | 23542271 | X | 506308..506531 | 2294..2517 | 1120 | 100 | Plus |
| X | 23542271 | X | 507869..508039 | 3726..3896 | 855 | 100 | Plus |
| X | 23542271 | X | 504667..504785 | 848..966 | 595 | 100 | Plus |
| X | 23542271 | X | 502835..502937 | 747..849 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:09:12 has no hits.
BS31461.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-14 10:36:27 Download gff for
BS31461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RI | 116..3994 | 17..3895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:30 Download gff for
BS31461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RI | 1003..4881 | 17..3895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:15 Download gff for
BS31461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RI | 1003..4881 | 17..3895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:15 Download gff for
BS31461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 501985..502220 | 32..267 | 100 | -> | Plus |
| X | 502287..502766 | 268..747 | 100 | -> | Plus |
| X | 502836..502936 | 748..848 | 100 | -> | Plus |
| X | 504668..504785 | 849..966 | 100 | -> | Plus |
| X | 504916..506242 | 967..2293 | 100 | -> | Plus |
| X | 506308..506531 | 2294..2517 | 100 | -> | Plus |
| X | 506599..507806 | 2518..3725 | 100 | -> | Plus |
| X | 507869..508038 | 3726..3895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:30 Download gff for
BS31461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 396869..396969 | 748..848 | 100 | -> | Plus |
| arm_X | 398701..398818 | 849..966 | 100 | -> | Plus |
| arm_X | 396018..396253 | 32..267 | 100 | -> | Plus |
| arm_X | 396320..396799 | 268..747 | 100 | -> | Plus |
| arm_X | 398949..400275 | 967..2293 | 100 | -> | Plus |
| arm_X | 400341..400564 | 2294..2517 | 100 | -> | Plus |
| arm_X | 400632..401839 | 2518..3725 | 100 | -> | Plus |
| arm_X | 401902..402071 | 3726..3895 | 100 | | Plus |
BS31461.pep Sequence
Translation from 16 to 3894
> BS31461.pep
MNTCLEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPE
TAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRV
FKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFS
NCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDAS
GFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAP
QQVRVTNDNQEALRLDFKLAPVETNFDGNFRKVKVERSEPPQKLKKQFNG
FLTPTKYEHHNFTAMESYLRAISSSYPSLTRLYSIGKSVQGRDLWVLEIF
ATPGSHVPGVPEFKYVANMHGNEVVGKELLLILTKYMLERYGNDDRITKL
VNGTRMHFLYSMNPDGYEISIEGDRTGGVGRANAHGIDLNRNFPDQYGTD
RFNKVTEPEVAAVMNWTLSLPFVLSANLHGGSLVANYPFDDNENDFNDPF
MRLRNSSINGRKPNPTEDNALFKHLAGIYSNAHPTMYLGQPCELFQNEFF
PDGITNGAQWYSVTGGMQDWNYVRAGCLELTIEMGCDKFPKAAELSRYWE
DHREPLLQFIEQVHCGIHGFVHSTIGTPIAGAVVRLDGANHSTYSQVFGD
YWKLALPGRHNLTVLGDNYAPLRMEVEVPDVHPFEMRMDITLMPDDPQHW
ASANDFRIIENVVNTRYHTNPQVRARLAELENQNGQIASFGYADSEFGTI
FNYLKMTSDIGEPEEHKYKLLVVSSLYDTTAPLGREILLNLIRHLVEGFK
LQDTSVVELLKRSVIYFLPQTSKFQNVFDMYNSNTSICDPVLGDELAERI
LGPETDQAKDVFLQFLRSERFDLMLTFGAGNSDLNYPKGDSVLVKFAHRM
QRTEFNYSPLQCPPSATRQLHRETTERLTNMMYRIYNLPVYTLGISCCRM
PHQKKIASVWRKNIDKIKNFLALVKTGVSGLVQNDKGQPLREAYVRLLEH
DRIINVTKNVARFQLMLPHGLYGLEVTAPNYESQMIKVDVEDGRVTELGI
IRMHPFTLIRGVVLELPNNDNRATTSIAGVVLDESNHPVRNAKVSVVGQT
QLRNFTGSMGQYRISAVPLGTITLKVEAPRHLEATRQMHLIQGGLATENV
VFHLKVNEHVFGLPRFLFILCASVLIIVGVIVCVLCAQFWFYRRHRGDKP
YYNFSLLPQRGKEQFGLEDDDGGDDGETELFRSPIKRGMTIQPYFDEEQL
ERILHTDDDDDDGPHMEPELDVADDSEDDIVMLHNNGNKRRH*
BS31461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-PI | 1292 | CG4122-PI | 1..1292 | 1..1292 | 6880 | 100 | Plus |
| svr-PN | 1439 | CG4122-PN | 153..1439 | 6..1292 | 6851 | 100 | Plus |
| svr-PH | 1437 | CG4122-PH | 151..1437 | 6..1292 | 6851 | 100 | Plus |
| svr-PG | 1439 | CG4122-PG | 153..1439 | 6..1292 | 6851 | 100 | Plus |
| svr-PM | 1406 | CG4122-PM | 153..1396 | 6..1249 | 6550 | 99.1 | Plus |
| svr-PN | 1439 | CG4122-PN | 29..418 | 296..694 | 672 | 37.5 | Plus |
| svr-PG | 1439 | CG4122-PG | 29..418 | 296..694 | 672 | 37.5 | Plus |
| svr-PH | 1437 | CG4122-PH | 25..416 | 308..694 | 656 | 36.8 | Plus |
