BS31479.complete Sequence
3980 bp assembled on 2012-07-31
GenBank Submission: KX800465
> BS31479.complete
GAAGTTATCAGTCGACATGGGCCTCGAATTTTTCTTTAAGTTCGGCTATG
CCTTCCTGACTATAACGCTCATGATCATGATCTGGATGTCGCTGGCTCGC
GCCTCCATGTTCGATCGCGAGATGGAGGAGACGCATTACCCGCCCTGCAC
CTACAACGTGATGTGCACCTGCTCCAAGTCCTCCACGGATCTGGGGATAG
TGCACTGCAAGAATGTTCCGTTTCCGGCACTGCCGCGCATGGTGAACCAG
TCAAAGGTTTTCATGCTGCACATGGAGAACACAGGTCTGCGGGAGATTGA
GCCCTACTTCCTGCAGTCCACGGGCATGTACCGCCTAAAGATCTCTGGGA
ACCATCTCACCGAGATCCCAGATGATGCCTTCACCGGCCTGGAGCGATCG
CTGTGGGAGCTGATTCTGCCGCAGAACGACCTGGTGGAGATCCCGTCCAA
GTCCCTGAGGCACCTGCAGAAGCTGCGTCATCTGGACCTGGGCTACAACC
ACATAACGCACATTCAGCACGACTCGTTCCGCGGCCTGGAGGACTCGCTG
CAGACGCTGATCCTGCGCGAGAACTGCATATCGCAGCTGATGTCGCACAG
CTTCTCCGGGCTCCTCATTCTTGAGACCCTCGACCTGAGTGGGAACAACC
TGTTCGAGATCGATCCGAATGTGTTCGTCGATGGAATGCCGAGGCTGACC
CGTCTGTTGCTCACGGACAATATCCTCTCGGAGATTCCGTACGACGCCCT
GGGTCCGCTAAAGAGCCTTCGCACCCTAGATATCTCCCACAATGTGATCT
GGTCGCTCAGTGGCAACGAAACCTACGAGATCAAGGCCAGCACCAAGCTG
AATCTGGACAATCTACACCTGGAGTACAATCACATCGAGGTCCTGCCTCC
CAATTCATTCAAGTACTTCGATACCGTCAACCGCACCTTCTTCGATGGCA
ATCCCATTCACACTCTGAGGGAAGATGCATTTAAGCCCGCTCGAATCAGG
GAGATCTACATGCGCTACTGCGGCCTGACCAACATTTCGCCTGTGGCCTT
TGACAGCCTGGTGAACAGCCTCCAGATCCTGGATTTGTCTGGCAACAATC
TCACCAAGCTGCATCATAAGCTCTTCAACAATTTCGATGTCTTGAGGGTC
ATCAGCATGCGGGACAATAAGATCAAGATCCAGAAGCCCACGGAGACCTT
CAATGCGGTGCACTACACCCTCCTGAAATTGGACCTGAGTGGAGACCGCA
ACGACCCCACCAATCTGCAGACCCTGCGCAATATGACCAGAATGCGGAAC
ATGAGATCACTGTCGATCTCGCGCCTGGGATCCTCCTCCGTGGGACCCGA
GGACTTCAAGGACTTCGGCGTGGAGCTGGAGGATCTGCAGATCACCAGGG
CCAGTCTCTCCGGGATTCAATCGCACGCCTTCAAGCACGTTAGGGGTCTG
AAAAGGCTGGACTTTAGCGAGAACGGAATATCAAGCATAGAGAACGATGC
CTTCCATGAGATTGGTCACTCGCTCATCTCTCTGAAGATGTCGCACGGCT
ATTCTGGCAGTGCCCTGCCAGCTGAACCCCTAAGGCATCTGACCTCCCTC
CAAGAGCTGGACTTTAGCAACAATCACATCAGCAGCATGAGCGACACCAG
TTTCCATTTCCTGAAGAACTTGCGGCTCCTAGAGCTTCATGACAACAGGA
TCGAGCAGGTTTTAAAGGGCACCTTCCAGGGCGACATTCACTCAAAGCTG
GAGGAGATCTCGCTTCGCTTCAACCACCTGACCTCCATATCCCAGCATAC
CTTCTTCGATCTGGAAGCCTTGAGGAAACTGCATCTGGATGACAATAAGA
TTGACAAGATCGAGCGAAGAGCCTTTATGAACCTGGATGAGCTGGAGTAT
CTAAGCTTGAGGGGCAACAAGATAAACAACCTGGCCGACGAGTCCTTCCA
GAACCTACCGAAACTGGAGATCCTGGACATGGCCTTCAATCAGCTACCCA
ACTTCAACTTTGACTACTTCGACCAAGTGGGTACCCTTTCGAATCTTAAT
GTGAACGTGAGCCACAATCAAATCAGGCAGTTGATGTACAATTCCTCGTG
GAGTGGACGAAATGAACATGGTGGCATGTACCACTCGAATATTAAGATAT
TGGATCTTTCCCACAACAATATATCTATTATCCATCCTGGATACTTCCGG
CCTGCTGAAATTTCGCTGACACACCTACATCTGGGCTACAATTCGCTGAT
GAACACGACTCGTGATGTCTTCGGCAACATGCCCCACTTGCAATGGCTGG
ACCTCAGCTACAACTGGATCCACGAACTGGACTTTGATGCCTTCAAGAAC
ACCAAACAGCTCCAGCTGGTCTTCTTTGGCCACAATTACCTCAGTGACAT
TCCCCAGGATATATTCAAACCTGTCCAAGGCCTGCGCATCGTTGACTTCT
CGCATAATCACCTGAGGGGCCTGCCCGACAATCTCTTCTACAACGGAGGC
ATGGAAAAATTGGATGTGTCGCACAACATGATGTTGAAGATCCCCTCCTC
ATCGCTGTCCAGTTTGGCTGCGCTGACGCTTTGTGAACTGCACCTGTCCA
ACAACTTTATCTCTACCATTCACAGCATGGATTTGTCCAACAAGTTTAGA
TCCCTGCGCTACCTGGACATCTCATACAACTATCTGCTGCGAATTGATGA
TGCAGTGTTCGCCACCATGCCAAAACTGGCCGTTCTGGACCTCTCCCACA
ATCGGGATCTGAAGGTGATGGATAAGTCGTTTATGGGCTTGGAGAACTCG
CTGATCAAACTGGGCCTGGAGAACATTTCTCTGAGCACGGTGCCCGAGAT
TCGACTGAAGTATCTGCGGGAGTTCCGCCTGGGTTACAATGAGCTGCCCT
CGATTCCGCAGGAACTAGCCCACAATATGAGTAATCTGCGCATGCTTGAT
CTCTCCAACAACGACTTGACCAATGTGCCACTGATGACCCAAGCTCTGCC
CCACTTGAGACGTCTGATGCTTTCTGGCAATCCCATAACCTCGCTGAACA
ACAACAGTTTTGATGGCGTGAACGAGGATCTTGAGATGCTGGATATATCG
AATTTCCGGCTGCACTACTTCGAGTATGGCTGTTTGGACTCGTTGCCTCA
CTTGCGATCGCTTAAGCTCACTGCCTATTCCCACCTGGAGCACTTTAATA
TTCCACATCTGTTGCGCCACCATTACAATATCCGCCAGTTGTGGATCGAG
GCCCCACAGCCCTTCACTCGCATTGTTAAGAAGGGATCTGGACCCACCCA
GGAGATGCAGACCCTTCAGCTGGGCAATCCCACCGACTTGCAGCGCGAAA
TGGAGGGCCATCTGCCCTCCAAGCTGACCAACATCACCTTCAGTGGTCCC
CAGTTCACCAACCTGAATGAACGCATTCTAAGAGGCATGCGTTCTCCATA
CCTCTACATGCAATTATTCAATACCTCGCTGCAAGCCTTGCCTCCGAACT
TTTTTAAGTACATGGGCCGAGTTCGGAACATTTCGCTGGACATTCGCTAC
CACAACAGGAACCTGAAGAAGATTCCCAATCCAAACACTGGAGCTGTTCC
CTATCTGCCGAATAGTGTGTTCCTCACGGACTTGAAGATGTCTCACACCG
ATCTCAACTGCGATTGCGACCTAGGGTGGGTGGAGTTTTGGCAGCGCAAG
AGGCGCCAGTACATCTGCTCCTCCCAAACCTGGACCGATACCGTCTTCCG
CACCTTCATGAACTCACCTTGCCAAGTGTACGGACGTCACAACTGCGACG
AACACGACGATGACCTGAGGGAGACGCGCTGTGAGAACAAAGGAGGGCAA
CAGCTGATGGAGGCCCTCAAATTCGATCTGGAGTGCGGGTGGGACAATGC
AAATTGCCGGGAGGCCGCCTTTGTGGTGGTGATGGTGTGCGTGGCCATGG
TCTTCTGGATGTGAAAGCTTTCTAGACCAT
BS31479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chp-RA | 3948 | CG1744-PA | 1..3948 | 17..3964 | 19740 | 100 | Plus |
| chp-RE | 3927 | CG1744-PE | 3..3927 | 40..3964 | 19625 | 100 | Plus |
| chp-RF | 3939 | CG1744-PF | 1..3939 | 17..3964 | 19570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chp-RA | 4872 | CG1744-RA | 468..4415 | 17..3964 | 19740 | 100 | Plus |
| chp-RE | 4851 | CG1744-RE | 470..4394 | 40..3964 | 19625 | 100 | Plus |
| chp-RF | 4863 | CG1744-RF | 468..4406 | 17..3964 | 19570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31208642..31209358 | 971..255 | 3585 | 100 | Minus |
| 3R | 32079331 | 3R | 31206950..31207563 | 2122..1509 | 3070 | 100 | Minus |
| 3R | 32079331 | 3R | 31205355..31205781 | 3434..3008 | 2135 | 100 | Minus |
| 3R | 32079331 | 3R | 31205838..31206196 | 3009..2651 | 1795 | 100 | Minus |
| 3R | 32079331 | 3R | 31206455..31206712 | 2508..2251 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 31205049..31205292 | 3677..3434 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 31209481..31209720 | 258..19 | 1200 | 100 | Minus |
| 3R | 32079331 | 3R | 31207621..31207849 | 1510..1282 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 31204803..31204991 | 3863..3675 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 31208368..31208545 | 1147..970 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 31206256..31206401 | 2650..2505 | 715 | 99.3 | Minus |
| 3R | 32079331 | 3R | 31207935..31208071 | 1281..1145 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 31206767..31206898 | 2251..2120 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 31204637..31204740 | 3964..3861 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:13:48 has no hits.
BS31479.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-31 08:50:12 Download gff for
BS31479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chp-RA | 468..4414 | 17..3963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:13 Download gff for
BS31479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chp-RA | 468..4414 | 17..3963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:02 Download gff for
BS31479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chp-RA | 468..4414 | 17..3963 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:02 Download gff for
BS31479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31204638..31204738 | 3863..3963 | 100 | <- | Minus |
| 3R | 31204804..31204990 | 3676..3862 | 100 | <- | Minus |
| 3R | 31205051..31205292 | 3434..3675 | 100 | <- | Minus |
| 3R | 31205356..31205779 | 3010..3433 | 100 | <- | Minus |
| 3R | 31205838..31206196 | 2651..3009 | 100 | <- | Minus |
| 3R | 31206256..31206397 | 2509..2650 | 100 | <- | Minus |
| 3R | 31206455..31206711 | 2252..2508 | 100 | <- | Minus |
| 3R | 31206767..31206897 | 2121..2251 | 100 | <- | Minus |
| 3R | 31206952..31207561 | 1511..2120 | 100 | <- | Minus |
| 3R | 31207621..31207849 | 1282..1510 | 100 | <- | Minus |
| 3R | 31207935..31208069 | 1147..1281 | 100 | <- | Minus |
| 3R | 31208369..31208544 | 971..1146 | 100 | <- | Minus |
| 3R | 31208643..31209356 | 257..970 | 100 | <- | Minus |
| 3R | 31209483..31209721 | 17..256 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:13 Download gff for
BS31479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27030360..27030460 | 3863..3963 | 100 | <- | Minus |
| arm_3R | 27030526..27030712 | 3676..3862 | 100 | <- | Minus |
| arm_3R | 27030773..27031014 | 3434..3675 | 100 | <- | Minus |
| arm_3R | 27031078..27031501 | 3010..3433 | 100 | <- | Minus |
| arm_3R | 27031560..27031918 | 2651..3009 | 100 | <- | Minus |
| arm_3R | 27031978..27032119 | 2509..2650 | 100 | <- | Minus |
| arm_3R | 27032177..27032433 | 2252..2508 | 100 | <- | Minus |
| arm_3R | 27032489..27032619 | 2121..2251 | 100 | <- | Minus |
| arm_3R | 27032674..27033283 | 1511..2120 | 100 | <- | Minus |
| arm_3R | 27033343..27033571 | 1282..1510 | 100 | <- | Minus |
| arm_3R | 27033657..27033791 | 1147..1281 | 100 | <- | Minus |
| arm_3R | 27034091..27034266 | 971..1146 | 100 | <- | Minus |
| arm_3R | 27034365..27035078 | 257..970 | 100 | <- | Minus |
| arm_3R | 27035205..27035443 | 17..256 | 99 | | Minus |
BS31479.pep Sequence
Translation from 16 to 3963
> BS31479.pep
MGLEFFFKFGYAFLTITLMIMIWMSLARASMFDREMEETHYPPCTYNVMC
TCSKSSTDLGIVHCKNVPFPALPRMVNQSKVFMLHMENTGLREIEPYFLQ
STGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLVEIPSKSLRHL
QKLRHLDLGYNHITHIQHDSFRGLEDSLQTLILRENCISQLMSHSFSGLL
ILETLDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKS
LRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSFKY
FDTVNRTFFDGNPIHTLREDAFKPARIREIYMRYCGLTNISPVAFDSLVN
SLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVHY
TLLKLDLSGDRNDPTNLQTLRNMTRMRNMRSLSISRLGSSSVGPEDFKDF
GVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIG
HSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLK
NLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLE
ALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKL
EILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNE
HGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRD
VFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIF
KPVQGLRIVDFSHNHLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSL
AALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFAT
MPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYL
REFRLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPLMTQALPHLRRL
MLSGNPITSLNNNSFDGVNEDLEMLDISNFRLHYFEYGCLDSLPHLRSLK
LTAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRIVKKGSGPTQEMQTL
QLGNPTDLQREMEGHLPSKLTNITFSGPQFTNLNERILRGMRSPYLYMQL
FNTSLQALPPNFFKYMGRVRNISLDIRYHNRNLKKIPNPNTGAVPYLPNS
VFLTDLKMSHTDLNCDCDLGWVEFWQRKRRQYICSSQTWTDTVFRTFMNS
PCQVYGRHNCDEHDDDLRETRCENKGGQQLMEALKFDLECGWDNANCREA
AFVVVMVCVAMVFWM*
BS31479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chp-PA | 1315 | CG1744-PA | 1..1315 | 1..1315 | 6938 | 100 | Plus |
| chp-PF | 1312 | CG1744-PF | 1..1312 | 1..1315 | 6905 | 99.7 | Plus |
| chp-PD | 1338 | CG1744-PD | 1..1312 | 1..1315 | 6905 | 99.7 | Plus |
| chp-PE | 1308 | CG1744-PE | 2..1308 | 9..1315 | 6895 | 100 | Plus |
| chp-PC | 1305 | CG1744-PC | 2..1305 | 9..1315 | 6862 | 99.7 | Plus |
