BS31484.complete Sequence
3635 bp assembled on 2012-09-14
GenBank Submission: KX802349
> BS31484.complete
GAAGTTATCAGTCGACATGCACATCAAGCAGATTATTATACAAGGCTTCA
AGAGTTACAAGGACCAGACGGTGGTGGAACCATTCGACAAGCGCCATAAC
GTTGTTGTTGGACGTAATGGCTCCGGGAAGAGCAACTTCTTCTACGCCAT
CCAGTTTGTGCTAAGCGATGAGTTCACCCACTTGCGGCCGGAGCAGCGTC
AGTCGCTTCTGCACGAGGGAACAGGTGCCCGCGTCATCTCCGCCTATGTG
GAGATCATCTTCGACAACTCGGACAACCGAGTTCCAATCGACAAAGAAGA
GATCTTTCTGCGGCGCGTGATTGGCGCCAAAAAGGACCAGTACTTCCTCA
ACAAGAAGGTGGTGCCGCGCAATGAGGTGGTCAATCTGCTGGAATCGGCT
GGTTTTTCCAGTTCAAATCCCTACTACATTGTCAAGCAGGGCAAAATCAA
TCAGATGGCAACTGCCGCCGATTCCTATCGTCTCAAGCTGCTACGCGAAG
TCGCGGGAACGCGTGTTTACGACGAACGGAAGGAGGAGTCGTTAAATCTA
TTGCGCGAGACGGACAGCAAGGTGGAGAAAATCAGCGAGTACCTAAAGAC
CATCGAGGATCGGCTCCAGACGCTCGAAGAGGAGAAGGAAGAGCTAAAGG
AGTACCAGAAGTGGGACAAGACGCGCCGCACGCTAGAGTATATACGCTAC
GAAACCGAGCTGAAGGACACCAAGAAGGCTCTCGACGAGCTCCAGCTGCA
GCGCAAGTCGTCCTCGGACAAAAAGAAGATCTACAACATTGAGATTCAGA
AGGCACAAGAGAAGATCAAGGATGTGCAAAAGAACCTTAAAGAGGCAAAG
AAGAAAGTGCAGAGCACAAAGGAGGAGCGCTCCGTACTGATGACGGAGCA
GCAACAGTTACTGCGCGAGAAAACGAAACTAGACCTAACCATTGTCGATC
TAAATGACGAGGTTCAGGGCGACAACAAGTCCAAGGAGCGGGCTGACCAG
GAGCTTAAGAACCTTAAGGTAACGATAGCCGAACGCGAAAAGGAACTGGA
CGACGTAAAGCCCAAATACGAGGCGATGAAGCGCAAGGAGGAAGACTGCT
CCCGAGAGCTGCAGCTCAAGGAACAGAAGCGCAAGGAGCTTTACGCCAAG
CAGGGTCGCGGTTCACAGTTCTCCTCTAGGGAGGATCGCGACAAATGGAT
CACCAACGAGCTGAAGTCAATTAGCAAACAGACGCGCGATAAAATCGCTC
ATCACGCAAAACTCGTGGAGGATCTGAAGAAGGACGCTACCTCCGAAAAG
GATCTGGGTCAAAAGATCGAGGAGCACTCATCGGAACTGGAGCAGCTCCG
ACTGCAGATCGACGAGCACAACAAGAAGTACTACGAGCTTAAGAAGACCA
AGGACCAGCATCAGTCCATGCGAAACGAGTTGTGGCGCAAGGAGACACAG
ATGACGCAGCAGCTGCAGACGCACAAGGAGGAGCTATCGCGGGCGGACCA
GGCGCTGCGCAGCATGGCCGGCAAGCCGATCCTGAACGGTTGCGATTCTG
TGCGCAAGGTTCTCGACAGCTTTGTGGAACGTGGCGGTCAATCGGCGGAG
ATTGCGAGAGCCTACTATGGACCCGTCATTGAGAACTTCAGCTGCGACAA
GACCATCTACACGGCGGTGGAGGTAACAGCCGCCAATCGGTTATTCCATC
ACATTGTGGAGTCAGAATACGAGGGCACGCAAATCCTCAAGGAGATGAAT
AAGCTGAAATTACCGGGCGAGGTGACCTTTATGCCCCTGAATCGACTTCA
GGTTAAAATACACGATTATCCGGATGATCCCGACTCCATACCTATGATCT
CCAAACTGAAGTACGATGAACAGCACGACAAGGCGCTGAGGTATATCTTT
GGAAAAACGCTAATCTGCAGAAATTTGGAGCGCGCCACCGAGCTGGCCAA
GAGCACTGGGCTGGATTGCGTTACGCTGGACGGAGATCAAGTGTCCTCCA
AGGGATCCCTCACTGGCGGCTATTTCAATACATCCCGTTCCCGTCTTGAG
ATGCAAAAGAAGCGCACGGAATACACCAGCCAGATAGCTGAATTCGAAAA
GAAACTCAGCAAGCTGCGAAACGAGCTCAAGTCCACCGAGAACAACATCA
ACTCAATCGTATCCGAGATGCAGAAGACGGAAACGAAGCAGGGCAAGTCG
AAGGATGTATTCGAAAAGGTGCAGGGCGAGATTCGCCTGATGAAGGAGGA
GCTGGTGCGCATCGAGCAGTATCGTGCGCCCAAGGAGCGCTCACTGGCCC
AATGCAAGGCCTCATTGGAGTCCATGACCAGTACGAAATCTAGTTTGGAG
GCGGAGCTGAAGCAGGAGCTGATGTCGACGTTGTCGTCGCAGGATCAGCG
TGAGATTGACCAGCTGAACGACGACATTCGTCGACTGAACCAGGAGAATA
AGGAAGCGTTTACGCAGCGTATGCAGTTCGAGGTGCGCAAGAACAAGCTA
GACAACCTGCTGATCAACAATCTGTTCCGGCGTCGCGACGAACTGATCCA
AGCGCTGCAGGAGATTTCCGTGGAGGACCGCAAGCGAAAGCTAAACAATT
GCAAAACGGAACTGGTTTCCGCCGAAAAGAGAATCAAGAAGGTCAACTCC
GATCTGGAGGAGATCGAAAAGCGGGTAATGGAGGCTGTGCAACTGCAAAA
GGAGCTGCAGCAGGAGCTCGAAACGCATGTGCGTAAGGAGAAGGAGGCCG
AGGAGAATCTTAACAAGGATTCCAAGCAGCTGGAAAAATGGTCGACCAAG
GAGAACATGCTCAACGAAAAAATCGATGAGTGTACGGAAAAGATTGCCAG
CTTGGGCGCCGTGCCGCTAGTTGATCCTTCCTACACACGCATGTCCCTGA
AGAACATCTTCAAAGAGCTGGAGAAGGCAAACCAGCACCTGAAGAAGTAT
AACCATGTGAACAAGAAAGCCCTGGATCAGTTCTTGAGCTTCTCCGAGCA
GAAGGAGAAGCTCTATCGCCGCAAAGAGGAGCTCGACATCGGTGACCAGA
AGATCCACATGCTAATTCAGTCATTGGAGATGCAAAAAGTGGAGGCCATT
CAATTTACGTTCCGACAAGTGGCGCAGAACTTCACCAAGGTGTTTAAGAA
GCTGGTGCCCATGGGCGCGGGCTTTCTCATCCTGAAGACCAAGGACAACG
AAGGCGACGAAATGGAAAAGGAGGTGGAAAACTCCGATGCTTTCACAGGG
ATCGGCATTCGGGTTTCGTTCACCGGCGTTGAGGCTGAGATGCGTGAGAT
GAACCAGTTGTCTGGTGGACAGAAGTCGCTTGTCGCCCTGGCCCTCATTT
TCTCCATCCAAAAGTGCGATCCAGCTCCCTTCTACCTATTTGATGAGATA
GATCAGGCGCTGGATGCAATGCATCGAAAGGCGGTGGCGAACATGATCCA
TGAGCTCAGCGACACTGCCCAGTTCATTACGACAACGTTCCGGCCGGAAT
TGCTGGAGAACGCGCACAAGTTCTACGGCGTGCGATTCCGAAATAAGGTC
AGTCACATTGATTGTGTGACCAGGGAGGAGGCCAAGGACTTCGTCGAGGA
CGACAGCACCCACGCCTAGAAGCTTTCTAGACCAT
BS31484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-RA | 3603 | CG9802-PA | 1..3603 | 17..3619 | 18000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-RA | 4020 | CG9802-RA | 74..3676 | 17..3619 | 18000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16589626..16592746 | 3407..287 | 15590 | 100 | Minus |
| X | 23542271 | X | 16589340..16589555 | 3619..3404 | 1080 | 100 | Minus |
| X | 23542271 | X | 16592944..16593084 | 286..146 | 705 | 100 | Minus |
| X | 23542271 | X | 16593160..16593277 | 146..29 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:08:42 has no hits.
BS31484.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-14 10:36:25 Download gff for
BS31484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 64..3666 | 17..3619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:25 Download gff for
BS31484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 74..3676 | 17..3619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:03 Download gff for
BS31484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC3-RA | 74..3676 | 17..3619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:03 Download gff for
BS31484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16592944..16593083 | 147..286 | 100 | <- | Minus |
| X | 16593160..16593274 | 32..146 | 100 | <- | Minus |
| X | 16589340..16589552 | 3407..3619 | 100 | <- | Minus |
| X | 16589627..16592746 | 287..3406 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:25 Download gff for
BS31484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16486977..16487116 | 147..286 | 100 | <- | Minus |
| arm_X | 16487193..16487307 | 32..146 | 100 | <- | Minus |
| arm_X | 16483373..16483585 | 3407..3619 | 100 | <- | Minus |
| arm_X | 16483660..16486779 | 287..3406 | 99 | <- | Minus |
BS31484.pep Sequence
Translation from 16 to 3618
> BS31484.pep
MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLS
DEFTHLRPEQRQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEEIFLRR
VIGAKKDQYFLNKKVVPRNEVVNLLESAGFSSSNPYYIVKQGKINQMATA
ADSYRLKLLREVAGTRVYDERKEESLNLLRETDSKVEKISEYLKTIEDRL
QTLEEEKEELKEYQKWDKTRRTLEYIRYETELKDTKKALDELQLQRKSSS
DKKKIYNIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQQLLR
EKTKLDLTIVDLNDEVQGDNKSKERADQELKNLKVTIAEREKELDDVKPK
YEAMKRKEEDCSRELQLKEQKRKELYAKQGRGSQFSSREDRDKWITNELK
SISKQTRDKIAHHAKLVEDLKKDATSEKDLGQKIEEHSSELEQLRLQIDE
HNKKYYELKKTKDQHQSMRNELWRKETQMTQQLQTHKEELSRADQALRSM
AGKPILNGCDSVRKVLDSFVERGGQSAEIARAYYGPVIENFSCDKTIYTA
VEVTAANRLFHHIVESEYEGTQILKEMNKLKLPGEVTFMPLNRLQVKIHD
YPDDPDSIPMISKLKYDEQHDKALRYIFGKTLICRNLERATELAKSTGLD
CVTLDGDQVSSKGSLTGGYFNTSRSRLEMQKKRTEYTSQIAEFEKKLSKL
RNELKSTENNINSIVSEMQKTETKQGKSKDVFEKVQGEIRLMKEELVRIE
QYRAPKERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQDQREIDQL
NDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQALQEI
SVEDRKRKLNNCKTELVSAEKRIKKVNSDLEEIEKRVMEAVQLQKELQQE
LETHVRKEKEAEENLNKDSKQLEKWSTKENMLNEKIDECTEKIASLGAVP
LVDPSYTRMSLKNIFKELEKANQHLKKYNHVNKKALDQFLSFSEQKEKLY
RRKEELDIGDQKIHMLIQSLEMQKVEAIQFTFRQVAQNFTKVFKKLVPMG
AGFLILKTKDNEGDEMEKEVENSDAFTGIGIRVSFTGVEAEMREMNQLSG
GQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDT
AQFITTTFRPELLENAHKFYGVRFRNKVSHIDCVTREEAKDFVEDDSTHA
*
BS31484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-PA | 1200 | CG9802-PA | 1..1200 | 1..1200 | 6057 | 100 | Plus |
| SMC2-PA | 1179 | CG10212-PA | 1..1166 | 1..1181 | 762 | 23.1 | Plus |
| glu-PA | 1409 | CG11397-PA | 89..1280 | 3..1172 | 571 | 22.3 | Plus |
| SMC1-PA | 1238 | CG6057-PA | 27..1215 | 3..1172 | 552 | 22.4 | Plus |
| zip-PH | 1964 | CG15792-PH | 873..1726 | 143..1073 | 303 | 20.2 | Plus |
