BS31515.complete Sequence
2180 bp assembled on 2012-09-25
GenBank Submission: KX803180
> BS31515.complete
GAAGTTATCAGTCGACATGTCGAATGATGTGCAGGTCGCCCGGGTGGCCA
AGATAGCTACCGATGTGCCGCGTCGCAGTGGCAAGCAGCGTGACTCCAGC
GGATTCCAGGGCAAGCACTCCGGCAGCGCGGCTGGCGAGGATTTCGAGTA
CGTCTTCGGTAGCATTTCGCCGCGCGGTGGAGGACCCGGTGGCAGGCACT
TGGTGGGATCCTCCGACCTGGACTCTCCGGAGCACACGCAGCGGGACACC
ACCGAGAGTGACAACAACATATCCAGCTGCTCCACGCTAGACATTGTCAA
CAAAGTTGAGCAACTGTCGGTACAACAGCTAGAAAACCGGGTGCGGGATC
TAACGCAGCGTCTGCAGCAGGCGGAAAGACAGCTCACTGAGAGCAACACA
GAGCGGGAAATATGCCACAAGCGCTTGGAGGTTGTCAGCCAGGCCCACGA
GTGTCGCATCACAGAGATGCACTGTGTCATCGCCGAGTTAAGCAAGAAAT
TGCGCAGTAAGCAGGACCACGTTATCATGGAGGAGCAGGAGCCCGACGGC
AGCGAACTCAGCTTTCAGGAGGGTTCAGTGTACAATTCCGAGCTTAACCT
CACCAATCCTGATGCCGAATGTCAAACAGAACCACTGGAAGACTTCGAGG
GCGCCTGCAGTACCACCAGCGTGGGTAACGTTGCCCACAAACCGCCGGAA
CTGAGCCATAAGGGACAAGTGGAGGCACTGCAGGAGGAAGTTCTGCACTT
GAGAGCTCGAATCGCCCTCCTCCAGTCCGAGATTTCCACCAAGGATGCTG
CTGTGGTCGAGGAACAGACCAAAGTCGCCTTCGACTGCGAATCGGAAGTC
AACGAGTGCGGACAGCGACTGAATGATTTGAATGTTTGCACTTCCTTGAC
AAGTCCGCAAAAACGCATTCCAGCGGTACCGAAAATGGCTGAACGGGTTA
AGTTGCGGTGCGCCAGCAAACATGAATCCGGAGAAGATCCATCCCAAGAT
ACTTCATTGAGCAACGAGCAAATTAATCTGGTCGAACATTTGGTGTCGGA
GCTAAAGGAGCAAAATCTATATATGGAGAACTTTATGGAGCCCCTACATT
TGAGCAAAGACTTGGAGCGACTGCAACGACGTGTTGAACAATTGGAGATG
CGAAACACCATGCTGGCACTGACGCTAGACGAATGCAAGGAGCACACTGA
GCATCTGTATCTGCTATGCGGAAAGTACGAGTCCAATGCGGTTGCTCTTC
AGTTGGCGCTTAATTGCAGTGATCGCGCCATCGAGGCCTACGACGTAATG
TTGGCTCTGCTCGAAAGCAAGTTGGCACTGCTGGGGGAGAAATCAGTGGC
AGCGGAAGAGAGTCGACGATCGGTGGAGGCGGTGGCCAGGCACCTGCTAG
CCCGTTTGGATAGCGAGAAAAACGTTTGTGAGAACAGCCTGGGACCGTGG
CAACACAACATCAACCTGGGCCCAGAGGATGCCCCAAAAACTGGCCGCCC
GTGGTGTGCCGACGACGACAACCGCCTGCGTTACCACGTCTCCAAGCTGA
AGGGACGTCGTTCCAATGTCCAGCATACCATTGTCAGTTTGGAATCACCC
TTCAGCGACATATACGAAAGAAAGCGCCTGGCTTTGGAAAAGGAGCACGA
ACTTCGGAGCGCGGACAAGAAGTCACCCATTGACTTGGAGACAGCAGTGA
TTATGCAAGAAATACTCGAGCTGCGGGATTCGAATTTGCAGCTGAAGACA
AAAATGGAAGAGGCCGAGCAGGAACGGCAGAACGCCAACGAACGAGTGGG
CATACTCCACGAAGCCCTAAAGCAGCTACAGGCAAACAACCGGGTCTCGT
ATTCGGAGGCGGAGCATGCGGCTCTCACAGAGCAGCAGTTGGTGGAGGCC
TTAACTCGAGAAACGGAGCTCAAGGGTCGCATACAGACGCTATTGGCAAA
TGTAACAGCTTCGCAGAAGGCCTTCGACGAAAAATACGAGCAACTGCATC
AGAACGTGCGTGAACTGCAGAAATCCAACCACAATCTGGGCCAAATGTTA
GATCACACCAAGCGCAAGTACCAGCTGCGGGTGAGGAAGCTCGAGCAGAA
GATTGTTGACCTGCGGCTGGACTACGAGCAAGGCCATAACCATGTTCCTG
AGACTACTCTGTAGAAGCTTTCTAGACCAT
BS31515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-RC | 2148 | CG34404-PC | 1..2148 | 17..2164 | 10725 | 100 | Plus |
| CG34404-RD | 1893 | CG34404-PD | 34..1893 | 305..2164 | 9285 | 99.9 | Plus |
| CG34404-RE | 1698 | CG34404-PE | 1..1698 | 467..2164 | 8475 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-RC | 2890 | CG34404-RC | 231..2379 | 16..2164 | 10730 | 100 | Plus |
| CG34404-RE | 2702 | CG34404-RE | 185..2044 | 305..2164 | 9285 | 99.9 | Plus |
| CG34404-RD | 2635 | CG34404-RD | 118..1977 | 305..2164 | 9285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15364635..15365345 | 2031..1321 | 3555 | 100 | Minus |
| 3R | 32079331 | 3R | 15365960..15366290 | 884..554 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 15365405..15365710 | 1322..1017 | 1530 | 100 | Minus |
| 3R | 32079331 | 3R | 15367145..15367435 | 306..16 | 1455 | 100 | Minus |
| 3R | 32079331 | 3R | 15366347..15366596 | 554..305 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 15365771..15365905 | 1018..884 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 15364444..15364576 | 2164..2032 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:09:35 has no hits.
BS31515.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 10:32:29 Download gff for
BS31515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RC | 214..2361 | 17..2164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:48 Download gff for
BS31515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RC | 232..2379 | 17..2164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:24 Download gff for
BS31515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RC | 232..2379 | 17..2164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:24 Download gff for
BS31515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15365407..15365708 | 1019..1320 | 100 | <- | Minus |
| 3R | 15365771..15365904 | 885..1018 | 100 | <- | Minus |
| 3R | 15364444..15364576 | 2032..2164 | 99 | <- | Minus |
| 3R | 15364635..15365345 | 1321..2031 | 100 | <- | Minus |
| 3R | 15365960..15366289 | 555..884 | 100 | <- | Minus |
| 3R | 15366347..15366596 | 305..554 | 100 | <- | Minus |
| 3R | 15367147..15367434 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:48 Download gff for
BS31515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11190166..11190298 | 2032..2164 | 99 | <- | Minus |
| arm_3R | 11190357..11191067 | 1321..2031 | 100 | <- | Minus |
| arm_3R | 11191129..11191430 | 1019..1320 | 100 | <- | Minus |
| arm_3R | 11191493..11191626 | 885..1018 | 100 | <- | Minus |
| arm_3R | 11191682..11192011 | 555..884 | 100 | <- | Minus |
| arm_3R | 11192069..11192318 | 305..554 | 100 | <- | Minus |
| arm_3R | 11192869..11193156 | 17..304 | 100 | | Minus |
BS31515.pep Sequence
Translation from 16 to 2163
> BS31515.pep
MSNDVQVARVAKIATDVPRRSGKQRDSSGFQGKHSGSAAGEDFEYVFGSI
SPRGGGPGGRHLVGSSDLDSPEHTQRDTTESDNNISSCSTLDIVNKVEQL
SVQQLENRVRDLTQRLQQAERQLTESNTEREICHKRLEVVSQAHECRITE
MHCVIAELSKKLRSKQDHVIMEEQEPDGSELSFQEGSVYNSELNLTNPDA
ECQTEPLEDFEGACSTTSVGNVAHKPPELSHKGQVEALQEEVLHLRARIA
LLQSEISTKDAAVVEEQTKVAFDCESEVNECGQRLNDLNVCTSLTSPQKR
IPAVPKMAERVKLRCASKHESGEDPSQDTSLSNEQINLVEHLVSELKEQN
LYMENFMEPLHLSKDLERLQRRVEQLEMRNTMLALTLDECKEHTEHLYLL
CGKYESNAVALQLALNCSDRAIEAYDVMLALLESKLALLGEKSVAAEESR
RSVEAVARHLLARLDSEKNVCENSLGPWQHNINLGPEDAPKTGRPWCADD
DNRLRYHVSKLKGRRSNVQHTIVSLESPFSDIYERKRLALEKEHELRSAD
KKSPIDLETAVIMQEILELRDSNLQLKTKMEEAEQERQNANERVGILHEA
LKQLQANNRVSYSEAEHAALTEQQLVEALTRETELKGRIQTLLANVTASQ
KAFDEKYEQLHQNVRELQKSNHNLGQMLDHTKRKYQLRVRKLEQKIVDLR
LDYEQGHNHVPETTL*
BS31515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-PC | 715 | CG34404-PC | 1..715 | 1..715 | 3643 | 100 | Plus |
| CG34404-PD | 630 | CG34404-PD | 12..630 | 97..715 | 3146 | 100 | Plus |
| CG34404-PE | 565 | CG34404-PE | 1..565 | 151..715 | 2877 | 100 | Plus |
| Mhc-PL | 1936 | CG17927-PL | 1174..1798 | 75..705 | 166 | 20.1 | Plus |
| Mhc-PM | 1936 | CG17927-PM | 1174..1798 | 75..705 | 166 | 20.1 | Plus |
