BS31520.complete Sequence
2312 bp assembled on 2013-01-14
GenBank Submission: KX805007
> BS31520.complete
GAAGTTATCAGTCGACATGTTTTTAGAATCGCATTTTTACTTGGTCCGTC
TGCCTTGTAAATATTGTGCTGGCCATATCCGGGGATCTTCGTTTGATCCC
TCGCTACCTGCGGAAGTCCTCCTCCGCTCTGATCTCTTCCTACCTGCCAA
TCTCTGCTATAAAAGCGGATGCTGGCCAAAAGTGGCCATCAGTCTACTAC
AAGTATTCGTGTTCAACACACAACTCTGCGCTCAGAACGAAGACAAAATG
TTTGAGAATTTTGAGTTCACCAACGAGAATCTATCGGCACAGACCATGGA
TCTGGACATCGATCTCATCAGTTGGACGGTGCCCAGCACTCCGACTTCCA
CTACTTTTACGGATAACTTTAATTTTGCTCAGGCGTTCGAAGAGCAACAG
CTGGATGCGGTTGCCTGCAAGGAGAACAAACATCAATGCGCCCGGACCAA
GGGAACGCTAGAGAAGACTATATTGCTGCTACAGCATACGCAAAAGGATT
GCGAGCGACTACGCGAGGATTTGGAGGACAAGGGCCTGGAGTGGATTCAG
CGGCAGCAGGAGAAGGAATATCTGCATCGCACTGAACTGAAGCAAGCTGA
AGAGAAATTAATGGAGGTGCAATTGCGTGCCAAGTTAAAGTTCTGCGAAT
TAGAGTCCCAACTGCGTGCCAAGGACGAGGAGAGCAAACAGGCGCAGGAG
GCCTACAGAATGGAGGTCTCCCACAAACTTGCACTGAAGCAGGAACATCT
GCGCACTGCCGAGCAGAAAATCCAGGAACTGCAGACACGTCTTCAGCAGG
TGGAGACCGAGGAGCAGGGGCACCGCGAGGAGCTGATCCGCAAGGAGAAC
ATTCACACCGCCCGGCTGGCCGAGGCCAATCAGCGGGAGCAGGATCTGAT
CGACCGGGTCAAGAGCCTGACCAAGGAGCTGAACACCCTGAAGGCCAACA
AGGAGCATAACGAACGCGATTTGAGGGATCGGCTGGCGCTGTCCCAGGAC
GAAATCTCTGTGCTGCGCACATCCTCACAGCGCCGCAGCCCCTGCACCAG
TTTGCCGGACAACGCGTCCGCCGAACTCAACCGCTTGACCAGCGAGGCAG
ACAGCTTGCGCTGTGTGCTTGAGCTCAAGCAGGCGGAGATTTCCGCCCTT
AGCAAGGCCAAGGCGGATCTGATTCATGAAAGCGAAGAGCGGCTGAAACT
GAGTAACCGCGTCGCCCTTTTGGAGGCCCAAAACGAAATGCTGCGCACCG
AACTGGAGGCCAAGACCGAAAAGGAGAAGGAAATCCAGCAAAAGATGGAG
GAACTTCAGAAGGCCTACAAATACGAGAGCATTAAACGCACGCGGCTGAC
GTATGACAAAGAGGAGCTACAGTACCACCTTAAGCAGAGATCATTGCAGC
TCCAGTCGGCTGAGTCAAAGTTGCAAGATCTTTCCACTGGTTCCCACGAT
AACAGCCTATCTAGCCACAGCCGATGCAGCCTGGGTCGCAGTGGCCTGGA
GATCGCCGTGACCACCTCCTCGCCCACTTCCCCAGTGATGAAGGGAATGA
TTGAACGGAATGATTCCGTCAGCTGGACGCTAGAGATCGAAGATGAGTCG
TTCAAGGGTAACACTTCAAAGATTGTGCGCAGGGCGGGGTCACTGCGAAG
CAACAACGAGCGGTGCCCCATCCAGCGGCGACAGACATTGACAAGCAATG
GACACTCCAATGGATCGGCCACAAATGGCGGCTCTTCCCCCGCTCATCCT
AATCCCCTTAGCCAGAGCATGTCGGCCACAGCCCTTCTGAGAAGCAGCAG
TAATTCCGGGGAGTCAGAGGGTCGTCCTTTGTCCCGGGCTCGCTCAAAAT
CGATGTGCATCAAAGCGTCCGCCACCAGTTCGGCGGTGTGCGAATCGTCT
GGCCAAAGGAAGAAACCACAAGACGAGTTGAGTCTGGCCGACTGGCCCGA
GGATATTCCCCTGTGCTCCAGTTCACCACAAGCGCCGGGAATAGAGATGC
GTCCGCGCAGCTCCACCATGAAGCTAATGTCCAGCGAGGCAAAGAAGTTC
CAGGAAATCCAGGAGTCCGCCGGCGAGGCCATGGTCTCCGGTGCTAACTC
GGAGGACGAAAGCTGTTCGGCCTCATCCGAGGACATAATGCGCAGCTCTT
CCGCCTCCAGCACCGCATCGGGTGGATCCCTATCCAAGAGGCCAAAGCAA
CCACCATCCCGCATGTCCATCGAGGAGGCTCTGCCCTGCACCCCCATGGA
GGTAAGCTGGTCAGAAGACGCTGCCGATGCCAACGGACTGGCATGAAAGC
TTTCTAGACCAT
BS31520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RF | 2049 | CG9660-PF | 1..2049 | 248..2296 | 10245 | 100 | Plus |
| toc-RJ | 2679 | CG9660-PJ | 782..2679 | 399..2296 | 9490 | 100 | Plus |
| toc-RI | 2811 | CG9660-PI | 914..2811 | 399..2296 | 9490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RF | 2525 | CG9660-RF | 1..2112 | 185..2296 | 10560 | 100 | Plus |
| toc-RJ | 4628 | CG9660-RJ | 1362..3259 | 399..2296 | 9490 | 100 | Plus |
| toc-RI | 3266 | CG9660-RI | 1051..2948 | 399..2296 | 9490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3069714..3070731 | 2296..1279 | 5090 | 100 | Minus |
| 2L | 23513712 | 2L | 3070822..3071506 | 1279..595 | 3425 | 100 | Minus |
| 2L | 23513712 | 2L | 3072156..3072540 | 400..16 | 1925 | 100 | Minus |
| 2L | 23513712 | 2L | 3071569..3071768 | 596..397 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:05:42 has no hits.
BS31520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-14 15:25:57 Download gff for
BS31520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RF | 1..2048 | 248..2295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:44 Download gff for
BS31520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RF | 1..2111 | 185..2295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:03 Download gff for
BS31520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RF | 1..2111 | 185..2295 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:03 Download gff for
BS31520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3069715..3070731 | 1279..2295 | 100 | <- | Minus |
| 2L | 3070823..3071504 | 597..1278 | 100 | <- | Minus |
| 2L | 3071569..3071764 | 401..596 | 100 | <- | Minus |
| 2L | 3072156..3072531 | 25..400 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:44 Download gff for
BS31520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3069715..3070731 | 1279..2295 | 100 | <- | Minus |
| arm_2L | 3070823..3071504 | 597..1278 | 100 | <- | Minus |
| arm_2L | 3071569..3071764 | 401..596 | 100 | <- | Minus |
| arm_2L | 3072156..3072531 | 25..400 | 100 | | Minus |
BS31520.pep Sequence
Translation from 16 to 2295
> BS31520.pep
MFLESHFYLVRLPCKYCAGHIRGSSFDPSLPAEVLLRSDLFLPANLCYKS
GCWPKVAISLLQVFVFNTQLCAQNEDKMFENFEFTNENLSAQTMDLDIDL
ISWTVPSTPTSTTFTDNFNFAQAFEEQQLDAVACKENKHQCARTKGTLEK
TILLLQHTQKDCERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLME
VQLRAKLKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQ
KIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKS
LTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNA
SAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSNRVA
LLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEE
LQYHLKQRSLQLQSAESKLQDLSTGSHDNSLSSHSRCSLGRSGLEIAVTT
SSPTSPVMKGMIERNDSVSWTLEIEDESFKGNTSKIVRRAGSLRSNNERC
PIQRRQTLTSNGHSNGSATNGGSSPAHPNPLSQSMSATALLRSSSNSGES
EGRPLSRARSKSMCIKASATSSAVCESSGQRKKPQDELSLADWPEDIPLC
SSSPQAPGIEMRPRSSTMKLMSSEAKKFQEIQESAGEAMVSGANSEDESC
SASSEDIMRSSSASSTASGGSLSKRPKQPPSRMSIEEALPCTPMEVSWSE
DAADANGLA*
BS31520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-PF | 682 | CG9660-PF | 1..682 | 78..759 | 3422 | 100 | Plus |
| toc-PJ | 892 | CG9660-PJ | 205..892 | 54..759 | 3162 | 90.7 | Plus |
| toc-PI | 936 | CG9660-PI | 249..936 | 54..759 | 3162 | 90.7 | Plus |
| toc-PH | 993 | CG9660-PH | 258..945 | 54..759 | 3162 | 90.7 | Plus |
| toc-PG | 840 | CG9660-PG | 153..840 | 54..759 | 3162 | 90.7 | Plus |
