BS31532.complete Sequence
4310 bp assembled on 2012-10-02
GenBank Submission: KX800473
> BS31532.complete
GAAGTTATCAGTCGACATGGATGTCCTGGAAATGCTGCGCGCCAGCGCCA
GCGGCAGCTACAACACAATATTCTCGGACGCGTGGTGCCAATATGTCTCC
AAGCAGATCACAGCAACGGTGTACATGTATTTCGCCCTGGTAATGATGAG
CCTGCTCTTCATAGCCTGGTTCTTATACTTCAAACGAATGGCACGTTTGC
GTTTGCGCGACGAGATTGCCCGTTCCATTAGCACCGTAACCAATTCATCC
GGCGATATGCGTGGCCTGCGTTTCCGGAAGCGTGACAAGATGCTATTCTA
CGGCCGTCGAATGCTGCGCAAAATGAAGAACGTGAGCGGTCAAATGTACA
GCAGCGGTAAGGGCTACAAGCGTCGTGCTGTCATGCGTTTCGCGAGAAGG
ATACTCCAGCTGAGGCGGGATAATATGCCGCTAGAGATGCGCACCGTGGA
GCCGCCAGCCGAGTATCTGGAGGAGACAATCGAGGGCAGCGATAGAGTTC
CGCCCGATGCACTCTATATGCTCCAGAGCATTCGCATTTTTGGACATTTC
GAGAAGCCGGTCTTTTTGCGGCTCTGCAAGCACACCCAATTGCTGGAACT
GATGGCCGGCGACTATTTGTTTAAGATAACCGATCCGGACGATAGCGTCT
ATATCGTTCAATCGGGCATGATCAATGTGTACATCTCCAATGCCGATGGC
AGCACACTATCATTGAAGACGGTCAGGAAGGGCGAGTCGGTGACATCGCT
GCTCAGCTTTATTGATGTCCTGTCGGGGAATCCCAGCTACTATAAGACGG
TCACCGCCAAAGCCATTGAGAAATCGGTGGTCATTCGTCTGCCCATGCAG
GCATTCGAAGAGGTGTTCCAGGACAATCCGGACGTAATGATTCGCGTCAT
CCAGGTGATTATGATCCGGCTACAACGCGTACTGTTCACCGCTTTGCGCA
ACTACCTCGGTCTAAATGCCGAACTGGTGCAGAATCACATGCGCTACAAG
AGCGTATCCACAATGAGTGGACCGATTAACTCGCAGACCTCGCAATCCTC
ACGCCAGGCGCCCAATGGGCCGCCCATGGTGATCAGCCAGATGAATCTGA
TGCAGTCCGCTGTTTCGGGAACGGGATCATCGGGTGTCTCGGTGACCGTA
ACTCGACCACCATCCTCGCCATCGCGACACTCGCGCGAGGAGCACACGCT
ATCCGATCCGAATCCAAATCCGGATGGTAGTTTTCACGGCACTACCAATC
TGTTCACCGAGGTGCATGGCGATGCGCCCAATGCAGATCTATTCCATCAG
CAGCAGCAGCAGCATTCGGTGGGCAACCTATCCACGCGTCGCAGTTCCAT
AACTCTGATGGCACCCGATGGTTCGCACTCGTGTCTACAGACACCCGGTG
TGACAACCTCGATAGACATGCGCCTGGTGCAATCCTCAGCGGTGGACAGC
CTACGCAAGGAATTGGGTCTGTCCGAGGAGGATTCCCACATCATTGAGCC
TTTTGTAGAGTTAAGGGAACTGGAGCCGAATGTCACCCTGATTACGGAGG
GCAATGCGGACGATGTTTGCGTTTGGTTTGTGATGACGGGCACATTGGCT
GTTTACCAGAGCAATCAGGATGCCACGCGGGCCAAGCAGGATAAGAGCGA
CATGCTCATTCACTTTGTGCATCCCGGCGAAATCGTTGGTGGACTGGCCA
TGCTAACGGGAGAGGCCAGTGCGTATACCATTCGATCGAGAAGCATCACC
AGAATAGCCTTCATCCGACGAGCAGCTATTTACCAGATCATGCGACAACG
ACCACGCATTGTTTTGGATCTGGGCAACGGAGTAGTACGCCGTCTATCGC
CTCTGGTGAGGCAGTGTGACTATGCCTTGGACTGGATCTTTCTGGAATCG
GGCAGAGCTGTCTATCGGCAGGACGAGAGCAGCGACAGCACATATATTGT
GCTTAGCGGGCGAATGCGTTCGGTTATCACGCATCCTGGTGGCAAAAAGG
AGATCGTCGGCGAATACGGCAAGGGGGATCTTGTGGGCATCGTTGAAATG
ATCACGGAAACGTCGCGCACCACGACGGTGATGGCTGTGCGCGACTCGGA
GCTGGCCAAGCTGCCCGAGGGCCTGTTCAATGCCATCAAGCTGCGCTACC
CCATCGTGGTGACCAAGCTGATTAGCTTCCTTAGCCACCGCTTCCTCGGC
TCGATGCAGACGCGCTCGGGCAGCGGGGCGCCGGGCGCGCCCGTCGAGGC
CAATCCCGTCACGCACAAGTACTCCACGGTGGCCCTGGTGCCCATCACCG
ACGAGGTGCCGATGACGCCCTTCACCTACGAGCTCTACCACTCGCTCTGT
GCCATAGGACCCGTTCTCCGTTTGACCTCCGATGTGGTGCGCAAGCAGCT
GGGCTCCAACATCTTTGAGGCAGCCAACGAGTATCGTCTAACCTCGTGGC
TGGCGCAGCAGGAGGACCGAAACATCATCACCCTCTATCAGTGTGACAGT
TCGCTGAGCGCGTGGACACAGCGCTGCATGCGACAGGCTGACGTTATCCT
GATCGTGGGCCTCGGCGATCGATCACACCTGGTCGGAAAGTTCGAACGCG
AGATCGACCGGCTGGCGATGCGAACGCAAAAGGAGCTCGTCCTGCTATAT
CCGGAGGCCAGCAATGCCAAGCCGGCCAACACGCTTAGTTGGCTAAATGC
CCGACCCTGGGTAACAAAGCACCACCATGTGCTCTGCGTCAAGCGGATCT
TCACGCGCAAAAGTCAATATCGCATTAATGATCTCTATAGTCGCGTCCTG
CTGTCCGAGCCAAACATGCATTCCGACTTCTCGCGTTTGGCGCGCTGGCT
TACGGGCAACTCGATTGGCCTGGTGCTGGGCGGCGGAGGAGCGCGTGGAG
CTGCCCACATTGGTATGCTGAAGGCCATCCAGGAGGCGGGCATACCTGTT
GACATGGTGGGCGGCGTCAGCATCGGTGCCTTGATGGGAGCTCTCTGGTG
CTCGGAGCGTAATATCACCACGGTAACGCAGAAGGCGCGCGAGTGGTCAA
AGAAAATGACGAAATGGTTCCTACAACTACTTGACCTCACCTACCCGATC
ACATCGATGTTCTCCGGACGAGAGTTCAACAAGACGATCCACGACACTTT
CGGGGACGTGAGCATCGAGGACCTGTGGATACCCTACTTCACCCTCACCA
CCGACATAACCGCCAGTTGCCATCGCATTCACACCAATGGCCACCTGTGG
CGGTACTGCCGCGCCAGCATGTCGATTGCCGGCGTCTTCCCACCATTTTG
TGATTACCGCGACGGCCACCTCCTGCTCGATGGCTGCTACACGAACAACG
TGCCAGCCGATGTGATGCATAATCTTGGAGCTGCTCACATAATCGCCATC
GATGTGGGATCCCAGGATGACACTGACCTGACCAACTATGGCGACGACCT
AAGCGGTTGGTGGCTGCTCTACAAGAAATGGAATCCCTTCACATCGCCTG
TGAAGGTGCCCGACTTGCCGGACATCCAATCCCGACTAGCCTATGTGTCC
TGCGTACGCCAACTAGAGGAGGTCAAAAACTCCGACTACTGCGAGTATAT
CCGACCGCCGATCGATAAGTACAAGACTCTAGCCTTCGGCAGCTTCGACG
AAATTCGAGACGTGGGCTATGTGTTTGGCAAAAACTACTTTGAGAGCATG
GCCAAGGCTGGTCGATTGGGCCGCTTCAATCAGTGGTTCAACAAAGAGCC
ACCCAAGCGGGTTAACCATGCCTCCCTCAACGAGTACACGTTCATCGATC
TGGCGCAGATCGTGTGCCGTCTGCCGGAGACATACGCCGTGAATACCGCG
GAACTCTTTAGCGAGGACGAAGACTGTGATGGCTACATTTCGGAGCCGAC
CACACTGAATACGGATCGGCGTCGCATCCAGGTGTCGCGCGCTGGCAACT
CGTTATCCTTTTCCGAAACGGAAATGGACTCGGACGTGGAGCTTGACCTG
AAGCTGGAGCGCAAGACGGACAAGTCCACACAGTCGTCGCCGCCGAGTAA
CAGCAGGTCGGACATGCGCGGCAAGGAAGAGGCTAGACATATGTCTAATT
GGCATTGGGGTGTGAAGCACAAGGATGAGACTGGCAGCGGAGCCACTGAA
GCCACAAAAACACAAACCGGTCAGGAGCAGGAACTCCAGCAGGAGCAACA
GGATCAGGGAGCTACGGCTGAGCAGCTGGTGGATAAAGACAAGGAGGAGA
ACAAAGAGAACAGAAGTAGCCCGAATAACGAAACCAAAAACTAGAAGCTT
TCTAGACCAT
BS31532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sws-RC | 4278 | CG2212-PC | 1..4278 | 17..4294 | 21390 | 100 | Plus |
| sws-RA | 4278 | CG2212-PA | 1..4278 | 17..4294 | 20775 | 99 | Plus |
| sws-RB | 1026 | CG2212-PB | 1..1026 | 3269..4294 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sws-RC | 5571 | CG2212-RC | 696..4973 | 17..4294 | 21390 | 100 | Plus |
| sws-RA | 5571 | CG2212-RA | 696..4973 | 17..4294 | 20775 | 99 | Plus |
| sws-RB | 1928 | CG2212-RB | 275..1330 | 3239..4294 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7963207..7964146 | 1786..847 | 4700 | 100 | Minus |
| X | 23542271 | X | 7964217..7964950 | 851..118 | 3670 | 100 | Minus |
| X | 23542271 | X | 7962569..7963141 | 2358..1786 | 2865 | 100 | Minus |
| X | 23542271 | X | 7961806..7962226 | 2776..2356 | 2105 | 100 | Minus |
| X | 23542271 | X | 7957418..7957799 | 4294..3913 | 1910 | 100 | Minus |
| X | 23542271 | X | 7957865..7958212 | 3914..3567 | 1740 | 100 | Minus |
| X | 23542271 | X | 7961439..7961714 | 3052..2777 | 1380 | 100 | Minus |
| X | 23542271 | X | 7958270..7958484 | 3569..3355 | 1075 | 100 | Minus |
| X | 23542271 | X | 7961176..7961365 | 3240..3051 | 950 | 100 | Minus |
| X | 23542271 | X | 7958978..7959095 | 3356..3239 | 590 | 100 | Minus |
| X | 23542271 | X | 7967438..7967541 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:33:05 has no hits.
BS31532.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-02 12:06:04 Download gff for
BS31532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sws-RC | 696..4964 | 17..4285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:06 Download gff for
BS31532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sws-RC | 696..4964 | 17..4285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:39 Download gff for
BS31532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sws-RC | 696..4964 | 17..4285 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:39 Download gff for
BS31532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7958978..7959094 | 3240..3356 | 100 | <- | Minus |
| X | 7961439..7961714 | 2777..3052 | 100 | <- | Minus |
| X | 7957866..7958210 | 3569..3913 | 100 | <- | Minus |
| X | 7957427..7957798 | 3914..4285 | 100 | <- | Minus |
| X | 7958271..7958482 | 3357..3568 | 100 | <- | Minus |
| X | 7961177..7961363 | 3053..3239 | 100 | <- | Minus |
| X | 7961806..7962224 | 2358..2776 | 100 | <- | Minus |
| X | 7962570..7963141 | 1786..2357 | 100 | <- | Minus |
| X | 7963208..7964142 | 851..1785 | 100 | <- | Minus |
| X | 7964218..7964949 | 119..850 | 100 | <- | Minus |
| X | 7967440..7967541 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:06 Download gff for
BS31532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7851460..7851831 | 3914..4285 | 100 | <- | Minus |
| arm_X | 7851899..7852243 | 3569..3913 | 100 | <- | Minus |
| arm_X | 7852304..7852515 | 3357..3568 | 100 | <- | Minus |
| arm_X | 7853011..7853127 | 3240..3356 | 100 | <- | Minus |
| arm_X | 7855210..7855396 | 3053..3239 | 100 | <- | Minus |
| arm_X | 7855472..7855747 | 2777..3052 | 100 | <- | Minus |
| arm_X | 7855839..7856257 | 2358..2776 | 100 | <- | Minus |
| arm_X | 7856603..7857174 | 1786..2357 | 100 | <- | Minus |
| arm_X | 7857241..7858175 | 851..1785 | 100 | <- | Minus |
| arm_X | 7858251..7858982 | 119..850 | 100 | <- | Minus |
| arm_X | 7861473..7861574 | 17..118 | 100 | | Minus |
BS31532.pep Sequence
Translation from 16 to 4293
> BS31532.pep
MDVLEMLRASASGSYNTIFSDAWCQYVSKQITATVYMYFALVMMSLLFIA
WFLYFKRMARLRLRDEIARSISTVTNSSGDMRGLRFRKRDKMLFYGRRML
RKMKNVSGQMYSSGKGYKRRAVMRFARRILQLRRDNMPLEMRTVEPPAEY
LEETIEGSDRVPPDALYMLQSIRIFGHFEKPVFLRLCKHTQLLELMAGDY
LFKITDPDDSVYIVQSGMINVYISNADGSTLSLKTVRKGESVTSLLSFID
VLSGNPSYYKTVTAKAIEKSVVIRLPMQAFEEVFQDNPDVMIRVIQVIMI
RLQRVLFTALRNYLGLNAELVQNHMRYKSVSTMSGPINSQTSQSSRQAPN
GPPMVISQMNLMQSAVSGTGSSGVSVTVTRPPSSPSRHSREEHTLSDPNP
NPDGSFHGTTNLFTEVHGDAPNADLFHQQQQQHSVGNLSTRRSSITLMAP
DGSHSCLQTPGVTTSIDMRLVQSSAVDSLRKELGLSEEDSHIIEPFVELR
ELEPNVTLITEGNADDVCVWFVMTGTLAVYQSNQDATRAKQDKSDMLIHF
VHPGEIVGGLAMLTGEASAYTIRSRSITRIAFIRRAAIYQIMRQRPRIVL
DLGNGVVRRLSPLVRQCDYALDWIFLESGRAVYRQDESSDSTYIVLSGRM
RSVITHPGGKKEIVGEYGKGDLVGIVEMITETSRTTTVMAVRDSELAKLP
EGLFNAIKLRYPIVVTKLISFLSHRFLGSMQTRSGSGAPGAPVEANPVTH
KYSTVALVPITDEVPMTPFTYELYHSLCAIGPVLRLTSDVVRKQLGSNIF
EAANEYRLTSWLAQQEDRNIITLYQCDSSLSAWTQRCMRQADVILIVGLG
DRSHLVGKFEREIDRLAMRTQKELVLLYPEASNAKPANTLSWLNARPWVT
KHHHVLCVKRIFTRKSQYRINDLYSRVLLSEPNMHSDFSRLARWLTGNSI
GLVLGGGGARGAAHIGMLKAIQEAGIPVDMVGGVSIGALMGALWCSERNI
TTVTQKAREWSKKMTKWFLQLLDLTYPITSMFSGREFNKTIHDTFGDVSI
EDLWIPYFTLTTDITASCHRIHTNGHLWRYCRASMSIAGVFPPFCDYRDG
HLLLDGCYTNNVPADVMHNLGAAHIIAIDVGSQDDTDLTNYGDDLSGWWL
LYKKWNPFTSPVKVPDLPDIQSRLAYVSCVRQLEEVKNSDYCEYIRPPID
KYKTLAFGSFDEIRDVGYVFGKNYFESMAKAGRLGRFNQWFNKEPPKRVN
HASLNEYTFIDLAQIVCRLPETYAVNTAELFSEDEDCDGYISEPTTLNTD
RRRIQVSRAGNSLSFSETEMDSDVELDLKLERKTDKSTQSSPPSNSRSDM
RGKEEARHMSNWHWGVKHKDETGSGATEATKTQTGQEQELQQEQQDQGAT
AEQLVDKDKEENKENRSSPNNETKN*
BS31532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sws-PC | 1425 | CG2212-PC | 1..1425 | 1..1425 | 7397 | 100 | Plus |
| sws-PA | 1425 | CG2212-PA | 1..1425 | 1..1425 | 7320 | 99.1 | Plus |
| sws-PB | 341 | CG2212-PB | 1..341 | 1085..1425 | 1827 | 100 | Plus |
