BS31539.complete Sequence
1559 bp assembled on 2012-09-28
GenBank Submission: KX805877
> BS31539.complete
GAAGTTATCAGTCGACATGCGGCGTCACTTACAGTGGAGCATTAAGCAGC
TAACAGCGAGTTACTCAGATGGTCAGCTGTCTCCTCGCCGGGTGACCGAA
GATGCTCTGCAAGATGCCCTGCGGTGGAAGACACTGAATGCCTTTGTGCG
CCTCACGCCGGAACAGGCGGGGCAGCAGGCCCAGGACGCGGAGCAGCGCT
ATAAGCTAAGGCAACCGATTAGTGATCTTGATGGAGTCACCATTGCCATC
AAGGACAACTTTTGCACCAAAGATGTACACACCACCTGTGCCTCACGGAT
GCTGCAAGACTTTGTGCCTCCCTATGATGCCACTGTGTGCTCCAGACTTA
AACAAGCCGGCGCTGTAATTCTGGGCAAGACGAATATGGATCAGTTTGCC
ATGGGCGCCGGCACTGTGGACTCCCTGTACGGGCCGACTAAGAACATCTG
GAGCGAGGACCTTAACAAGGATCACTGGCGCATCGCGGGCGGCAGTTCTG
GAGGCTCTGCATCCGCCGTAGCCGCGGGTCTTTGTTATGCAGCAATTGGT
TCGGACACGGGTGGCTCCACCCGAAACCCGGCTTCGTACTGCGGCGTGGT
GGGTCTAAAGCCCACCTACGGCCTCGTCTCCCGCCACGGTCTTATTCCGC
TGGTCAATTCCATGGACGTGCCCGGCATTTTTGCCCGCTCCGTCAGCGAT
TGCGTGGCGGTACTGAATACAGTGGCAGGGCCGGATAAACTGGACTCCAC
AACCATCAGGCAGCCTTTTACCAGGTTACATCTGCCGGAAGTTGGGCAAA
TTGACCTGAGCACTGTGCGCATAGGAATACCAAAGGAATACCATTGCCAC
GGTCTTTCCGCCGAAGTTCTGGAAACGTGGTCTAAGGTGGCCGATTTGCT
GGAGTGTAGCGGTGCCTCCGTCAGACAGGTTTCCCTGCCCAATACGGCAG
CAAGTATATTCGTGTACACCATTCTTAATCAGTGCGAAGTGGCCAGCAAC
ATGGCAAGGTATGATGGAATCGAGTACGGCCATCGGGCAACAGACGAGCG
CAGCACGGAGCAATTGTATGCCCTATCCAGGGCCGAGGGATTCAACGATG
TGGTTAAGACACGCATACTCACTGGAAACTTTCTGCTGCTGAAAAAGAAC
TATGATCACTACTTTGAGAAGGCTTTGCGGGTGCGCCGTCTTATTGCAGA
GGACTTTGCAAGGGTGTTTGATTCCTCGGCCAAAGAGGAGCGCGTGGACA
TCCTTCTCACGCCGACAACTCTTACAGAGGCTCCGCTGTACAAGGACTTC
GCCTCCCTGACCAACAGGGATCAGTGTGCCGTGCAGGACTTTTGCACTCA
GCCAGCCAACATGGCTGGAATTCCCGCCGTGTCTATACCGATTCGTCTGT
CTCAGGCCGGATTGCCCTTGAGCCTTCAGCTGATGAGCAACAGCCTCAAC
GAGCAGTTACTGCTCACAGTGGCACGATGGATAGAGGCGCAGGTGGAATT
CGACAGCCTAGAGCACTCGCAACAGTATAAGGCCAGTTTGTAAAAGCTTT
CTAGACCAT
BS31539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gatA-RA | 1527 | CG6007-PA | 1..1527 | 17..1543 | 7560 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gatA-RA | 1661 | CG6007-RA | 107..1634 | 17..1544 | 7565 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19026201..19027204 | 1544..541 | 4945 | 99.5 | Minus |
| 3R | 32079331 | 3R | 19028417..19028668 | 298..47 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 19028115..19028358 | 540..297 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:24:13 has no hits.
BS31539.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:37 Download gff for
BS31539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 86..1610 | 17..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:27 Download gff for
BS31539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 86..1610 | 17..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:22 Download gff for
BS31539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 107..1631 | 17..1541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:22 Download gff for
BS31539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19026204..19027204 | 541..1541 | 99 | <- | Minus |
| 3R | 19028115..19028357 | 298..540 | 100 | <- | Minus |
| 3R | 19028418..19028665 | 50..297 | 100 | <- | Minus |
| 3R | 19028719..19028751 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:27 Download gff for
BS31539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14853837..14854079 | 298..540 | 100 | <- | Minus |
| arm_3R | 14854140..14854387 | 50..297 | 100 | <- | Minus |
| arm_3R | 14854441..14854473 | 17..49 | 100 | | Minus |
| arm_3R | 14851926..14852926 | 541..1541 | 99 | <- | Minus |
BS31539.pep Sequence
Translation from 16 to 1542
> BS31539.pep
MRRHLQWSIKQLTASYSDGQLSPRRVTEDALQDALRWKTLNAFVRLTPEQ
AGQQAQDAEQRYKLRQPISDLDGVTIAIKDNFCTKDVHTTCASRMLQDFV
PPYDATVCSRLKQAGAVILGKTNMDQFAMGAGTVDSLYGPTKNIWSEDLN
KDHWRIAGGSSGGSASAVAAGLCYAAIGSDTGGSTRNPASYCGVVGLKPT
YGLVSRHGLIPLVNSMDVPGIFARSVSDCVAVLNTVAGPDKLDSTTIRQP
FTRLHLPEVGQIDLSTVRIGIPKEYHCHGLSAEVLETWSKVADLLECSGA
SVRQVSLPNTAASIFVYTILNQCEVASNMARYDGIEYGHRATDERSTEQL
YALSRAEGFNDVVKTRILTGNFLLLKKNYDHYFEKALRVRRLIAEDFARV
FDSSAKEERVDILLTPTTLTEAPLYKDFASLTNRDQCAVQDFCTQPANMA
GIPAVSIPIRLSQAGLPLSLQLMSNSLNEQLLLTVARWIEAQVEFDSLEH
SQQYKASL*
BS31539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gatA-PA | 508 | CG6007-PA | 1..508 | 1..508 | 2617 | 100 | Plus |
| CG7900-PB | 536 | CG7900-PB | 107..520 | 53..490 | 252 | 26.5 | Plus |
| CG8839-PA | 529 | CG8839-PA | 82..516 | 40..490 | 213 | 23.8 | Plus |
| CG8839-PC | 529 | CG8839-PC | 82..516 | 40..490 | 213 | 23.8 | Plus |
| CG8839-PE | 529 | CG8839-PE | 82..516 | 40..490 | 213 | 23.8 | Plus |
