BS31540.complete Sequence
1832 bp assembled on 2012-09-28
GenBank Submission: KX801512
> BS31540.complete
GAAGTTATCAGTCGACATGCATTTCGTCCTGGTTCTTTGTGTTTGTGCCT
GGTATTTGATCGCCTTTCGTGCCAATCGCGTTAATTTAATCCGTCATCGT
TTGCCAACGTGTTTTATCGCAATGGAGGCGAGCTCGAATCCCACAACACC
CACGACGGCGGTGGCCACCACCACATCCACATCCAGTCCATCGCCAGCTG
CCAGCACCAGCAGCAAAGGACACAGCCAATCCGCAACAGCATCTGCATCC
GCCTCCGCCACACAGTCACAGCTGCTGACCACCAGTCTGGAAATGCCCAA
GACGGAGGATCTGTACAATCTGTCCGTAGCCAGCGGACTATCCGAGGGAC
AGAGATCGCTCTCGGGCGCTCCGTCGGCCTCCTCCAGTCCCATTATGAGT
CCGCAGGGCAAGATCTTTGGAAGGAATGCGAATGGAACAATGATCACCAC
ATCGCGACCGGGCAACGAGGCGGAGGTGCAGCTGTACCGGGTACTCCAGA
GGGCCAGTCTGTTGGCCTACTACGACACCCTGCTGGAAATGGGCGGTGAT
GATGTGCAGCAGTTGTACGACGCCGGCGAGGAGGAGTTCCTCGAGATCAT
GGCCCTGGTCGGCATGGCTTCCAAGCCACTTCACGTCCGCCGGCTGCAGA
AGGCGCTGCACGAGTGGGCCAACAATCCGGGTCTCTTCCAGGGACCCATG
ATGCCGCATCTGGGTCTCTGCGAAACGCCACCGAAACCGGCATTGATCTT
CAATCCGGACACCACGCCCGCTCTGCCCCGCCAGAAATTTCCCTCGTTCA
ATCCCTCGGGTTCCTCCTTTATGCCCTCGCCGGTTCCCCCAGCTCCACTG
CCCGCTTCCGCCTCGGTTCCCGCTCCCACTGTCCCCTTGGCTACCCAGAT
CAGCTGTCCCTCAGCTCCTTCGGTGCCCTTGCCGCTGGTACTGCCCCCCA
ACCCGCTGACCAGCAGTCCGCATCCCTCGGCGAACAGTAACCTTCCGGCG
AACACCGCCCACCAGGTCTCCTCCAGTTCGCCCCAGCTCACACCTGTTCT
GACCGAAGCGCAGATCCAGCGGATAACCATGTGTGCTGATAAGATTGGCA
GGCAACTGCCCCAGAGGGAACCGCGCGCCCAGACCACCAGGAAGCGAACC
ACCCGGGAACTGGAGCAGGTTATCGCCATGGGGGAACAGGATCCGCGGCG
CATGGACGAGATCCGTAAGTACTCGGCCATCTACGGCCGTTTCGATTGCA
AAAGGCGGCCGGAGAAGCCGCTGACCTTGCACGAGGTGTGCGTCAATGAG
GCGGCGGCCCAGCTGTGTCGGAATCCCCAGACCATCTGGCTGCTGACCCG
CCGGGATGAGCTGTTCCCCCTGGCACGGCAGATTGTCAAGGATGCCGGGT
TCGGCCACTCGGCCAGCATTGCCCGGTACGGTGGTCTGCTCACCCAGCTG
CCGTCGCAGGGAGCGGGATTGGGCGGAGGACGGGCTCCTGGCGACACGGA
CTGCGAGTCCAGTGACGCCGCCGTGCCCTCCAAGCGACAGCGACTCTCCT
CTACGGAGGCTGCGCAGCTGCCGCTCGACTTGAATCGGGAAGCTGTCGAG
GATTCGCGCTACAATCTGTTCGCCATGTACCAAAAGTTTGCCAAGCCGCC
ATTTGATCTGTCGGAAATTGCCAAGTTCTCAGTCAGCAAGGCGGCTGATT
ATGAGGACAACGATTCGCGCTTCTCGTTCAGCAACTCAAGCTCGCCGACC
ATGCCAGTGAGTATGTGTTGGAGCTCTACGAGGGCATTCCGTTACCCGGG
AAAGGCCGAAGAATAAAAGCTTTCTAGACCAT
BS31540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nab-RB | 1695 | CG33545-PB | 1..1695 | 122..1816 | 8475 | 100 | Plus |
| nab-RD | 1665 | CG33545-PD | 1..1639 | 122..1760 | 8195 | 100 | Plus |
| nab-RC | 1878 | CG33545-PC | 1..1635 | 122..1756 | 8175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nab-RB | 2470 | CG33545-RB | 178..1978 | 16..1816 | 9005 | 100 | Plus |
| nab-RD | 2389 | CG33545-RD | 178..1922 | 16..1760 | 8725 | 100 | Plus |
| nab-RC | 2385 | CG33545-RC | 178..1918 | 16..1756 | 8705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4155238..4156114 | 1589..713 | 4385 | 100 | Minus |
| 3L | 28110227 | 3L | 4160331..4160755 | 440..16 | 2125 | 100 | Minus |
| 3L | 28110227 | 3L | 4156222..4156496 | 715..441 | 1375 | 100 | Minus |
| 3L | 28110227 | 3L | 4154110..4154245 | 1816..1681 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 4154367..4154459 | 1680..1588 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:24:27 has no hits.
BS31540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:37 Download gff for
BS31540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nab-RB | 179..1970 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:30 Download gff for
BS31540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nab-RB | 179..1970 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:28 Download gff for
BS31540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nab-RB | 179..1970 | 17..1808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:28 Download gff for
BS31540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4154367..4154458 | 1589..1680 | 100 | <- | Minus |
| 3L | 4156224..4156496 | 441..713 | 100 | <- | Minus |
| 3L | 4154118..4154245 | 1681..1808 | 100 | <- | Minus |
| 3L | 4155239..4156113 | 714..1588 | 100 | <- | Minus |
| 3L | 4160331..4160754 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:30 Download gff for
BS31540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4156224..4156496 | 441..713 | 100 | <- | Minus |
| arm_3L | 4160331..4160754 | 17..440 | 100 | | Minus |
| arm_3L | 4154118..4154245 | 1681..1808 | 100 | <- | Minus |
| arm_3L | 4154367..4154458 | 1589..1680 | 100 | <- | Minus |
| arm_3L | 4155239..4156113 | 714..1588 | 100 | <- | Minus |
BS31540.pep Sequence
Translation from 16 to 1815
> BS31540.pep
MHFVLVLCVCAWYLIAFRANRVNLIRHRLPTCFIAMEASSNPTTPTTAVA
TTTSTSSPSPAASTSSKGHSQSATASASASATQSQLLTTSLEMPKTEDLY
NLSVASGLSEGQRSLSGAPSASSSPIMSPQGKIFGRNANGTMITTSRPGN
EAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGM
ASKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPDTT
PALPRQKFPSFNPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSA
PSVPLPLVLPPNPLTSSPHPSANSNLPANTAHQVSSSSPQLTPVLTEAQI
QRITMCADKIGRQLPQREPRAQTTRKRTTRELEQVIAMGEQDPRRMDEIR
KYSAIYGRFDCKRRPEKPLTLHEVCVNEAAAQLCRNPQTIWLLTRRDELF
PLARQIVKDAGFGHSASIARYGGLLTQLPSQGAGLGGGRAPGDTDCESSD
AAVPSKRQRLSSTEAAQLPLDLNREAVEDSRYNLFAMYQKFAKPPFDLSE
IAKFSVSKAADYEDNDSRFSFSNSSSPTMPVSMCWSSTRAFRYPGKAEE*
BS31540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nab-PB | 564 | CG33545-PB | 1..564 | 36..599 | 2903 | 100 | Plus |
| nab-PD | 554 | CG33545-PD | 1..552 | 36..586 | 2805 | 99.3 | Plus |
| nab-PC | 625 | CG33545-PC | 1..545 | 36..580 | 2798 | 100 | Plus |
