BS31543.complete Sequence
2057 bp assembled on 2012-09-28
GenBank Submission: KX803349
> BS31543.complete
GAAGTTATCAGTCGACATGGGCCTGCTGTCCGATCCGTCGATATCGACGC
AAAGCAAGCTGGTGGACGGACTGGCGCGTCATGTTCGCAAGGTGTGCTAC
GCCCTTTATGTGGCGGGTGTGGCCTGGTTCTTCTGTTTGGCGCTGCCGGA
GTTCAACCACGGGACATATCTCTCCGAGAATGCTCTTTCGCCAGGCTTGG
TCTATCCGGAGATCCGCATCGATGCGAATCGTCTGGCCATCCAGTTGCTG
GAGGAGCTGCAGCGGGAGCGAAAGGATCATCTGTCCACCACGCCGCACGC
CTGGATTGCGGCCAAGATGAACGAGTTCGGCCTGGAGACGCACACGCACA
ACTACACGTTGCGCTACCCATTTGGCGGCGGTAAAGAGTATCACGGCAAG
AATATCTACGGCATATTGAGGGCCCCAAGAATTGCCTCCACGGAGGGCAT
CGTTTTTGCGGCTCCATATCGCGCTGCCAGTTCCGTGCACACGGACATTT
CCGCCAGCGTGCCGCTTCTGCTGGCCTTCGCCGATTTTGCCCGGCGCAAG
AACTACTGGGCGAAGGATCTGATCTTCCTGATCACCGAACAGGAGCAGCT
GGGCATGCAGGCCTGGCTGGAGGCTTATCACGATGGCGACCGGGAACTGG
ACTTGAGCAAGGCGTACCTGCGTCCTGGCAATTTGCCCGCTCGCGCTGGT
TCGCTGCAAGCGGCTCTGAATATTGAAGTTCAGGATCTGGAGATTGACCA
TGTGGATGTGCGAATAGAGGGCTTGAACGGCAAGCTGCCCAATCTGGATA
TGTTCAATCTGGTGCAGAGAATTATGGCCCGCGAGGGCATCGCCTCTGGC
TATAAACAAGCGCCACGCAAGAAGCGTCGTCACAGCCAGTCGCACTTCGA
GCAGAACTTCCGCCAGATGCTGACCATGCTGGCCAGCCAGTCGTCGGGCG
TACCCACTGGCAATCATGGGCTGTTCCACCGTTATCGGATCGATGCTTTG
ACCATAGCTGCCAATCGAAGGGCCACCCATGCCACACTGAAGGGCAGCCC
AGGATCGGCAGCGGTGCCTTTGCTGAAGGCCATCGAGGGAATAGCCAGGA
GTCTGAACAACCTTCTGGAGCGCTTCCATCAAAGCTTTTTCTTCTATGTG
ATCGTAAGCAACGATCGCTACATCTCCATTGGGGATTATATGCCCGCTTT
GGTGGCTCTGGTAGCTTGTGCCTTCCTTAAGGCCTATCTAACGTGGTCCA
CGCTCCCGGCGACCAACGCTGAGCTGGAAAAGGCCGCTGGCTGGCTTAGG
GAGCACGAACAGGAGGCGGAACTGGAGGAGAACCTAGAGCCGGATAAGTT
CGAGCTGCCGTATGGTTCGGTATTGATTTACCTTACTGCCACCCTGTTGA
TTGGTTTCCTGTGCAACGTGCTGCCCCTGCAGCAATATTTCCTAGAGATT
CCTATGGGCGCCGCACCACTGACCACCTCAGTACTGAGTTTTCTTTCTCT
GATCGGTTTCGTTCTGCCCTTTGTGGTGGTTTTGCCGCCCGGAGGATTGG
AGCTGCTGCATGTGGCCTTTCTGCTAATCTATGGCTGCGCTTTAATAGTC
ATCGGGCTCCTCAACTTTGCCCTGGGCTTATTTGCGGCCGTGCTGACTGT
ACCGCTGGTCATCGCGCTGGAGACCAAGGAGGAGAACTCGCGCAGCACGC
TGAGGAACACGATCCGCTTGGCCACGCTGGTCATGAATCCCATGATGGTC
GTTTATGTGATCGTGCTGGCCATGACATTCTACCAGTTCCCGGAGCTGCC
GGTGCAGAAGATCATGCTGAGGGCGGCCACCGCGGCCATGGATGCCTCGG
CTTATGGACTTATCGATTCCGTGATTTATGGCAACTGGCTGTACTTTGTC
ATCTGCACGATTTTCCTGCCGCTGTGGATCATCTGCTGGACCTTGTCGCT
GTCCAAGCGACGCGACTACGCAGATTACCTGGACTTCGATGAGTCGCCAT
CAACGTCGCCGCAGCCGCAGTCAAAGGTGAAAACGAATTGAAAGCTTTCT
AGACCAT
BS31543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAA1-RA | 2025 | CG3033-PA | 1..2025 | 17..2041 | 10125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAA1-RA | 2388 | CG3033-RA | 102..2126 | 17..2041 | 10125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5871340..5873020 | 1873..193 | 8405 | 100 | Minus |
| X | 23542271 | X | 5873078..5873256 | 195..17 | 895 | 100 | Minus |
| X | 23542271 | X | 5871103..5871271 | 2041..1873 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:24:46 has no hits.
BS31543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:39 Download gff for
BS31543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3033-RA | 109..2132 | 17..2040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:34 Download gff for
BS31543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAA1-RA | 102..2125 | 17..2040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:33 Download gff for
BS31543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAA1-RA | 102..2125 | 17..2040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:33 Download gff for
BS31543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5871104..5871270 | 1874..2040 | 100 | <- | Minus |
| X | 5871340..5873018 | 195..1873 | 100 | <- | Minus |
| X | 5873079..5873256 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:34 Download gff for
BS31543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5765137..5765303 | 1874..2040 | 100 | <- | Minus |
| arm_X | 5765373..5767051 | 195..1873 | 100 | <- | Minus |
| arm_X | 5767112..5767289 | 17..194 | 100 | | Minus |
BS31543.pep Sequence
Translation from 16 to 2040
> BS31543.pep
MGLLSDPSISTQSKLVDGLARHVRKVCYALYVAGVAWFFCLALPEFNHGT
YLSENALSPGLVYPEIRIDANRLAIQLLEELQRERKDHLSTTPHAWIAAK
MNEFGLETHTHNYTLRYPFGGGKEYHGKNIYGILRAPRIASTEGIVFAAP
YRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFLITEQEQLGMQAW
LEAYHDGDRELDLSKAYLRPGNLPARAGSLQAALNIEVQDLEIDHVDVRI
EGLNGKLPNLDMFNLVQRIMAREGIASGYKQAPRKKRRHSQSHFEQNFRQ
MLTMLASQSSGVPTGNHGLFHRYRIDALTIAANRRATHATLKGSPGSAAV
PLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDYMPALVALVA
CAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPYG
SVLIYLTATLLIGFLCNVLPLQQYFLEIPMGAAPLTTSVLSFLSLIGFVL
PFVVVLPPGGLELLHVAFLLIYGCALIVIGLLNFALGLFAAVLTVPLVIA
LETKEENSRSTLRNTIRLATLVMNPMMVVYVIVLAMTFYQFPELPVQKIM
LRAATAAMDASAYGLIDSVIYGNWLYFVICTIFLPLWIICWTLSLSKRRD
YADYLDFDESPSTSPQPQSKVKTN*
BS31543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAA1-PA | 674 | CG3033-PA | 1..674 | 1..674 | 3466 | 100 | Plus |
