BS31544.complete Sequence
2729 bp assembled on 2012-09-28
GenBank Submission: KX802305
> BS31544.complete
GAAGTTATCAGTCGACATGAGTTTCCAGAATAAGCTGGATGAGTACACCA
GGAACTTGGACCTGGCCAAGTGGTATATGGGAATCTCGGCGAAACAGGAG
GCCACGATGTCCACAATGTCCGAGAGCCTCCGGGATGACTTCGAGCAGGG
AACAGGGGAAAAGATGTTCAAGGCACTGATATCCCTGGGCCTCCAGCCGG
TGATATCCAAAAAGAAGATCAGCCGGATCGTGCAGTTGAGCAGGAACAAC
ATACTGGCCTTCCTGTTCTTTGTGATGGAGGGCTACTACAAGACGAAACA
AACGGATGGCGTTTACAGCATTAATGAGCAGCTGCTAATGAATGCCATTG
CCAAGATCGACATGTTGCCCACCATTCGTGCTCTGGACATTGTGCTGCCC
CAGCCTCCGGTCAAAAAACCGGATCCTCAAACTCAATCGTTAGCTTCCCT
GACCACGGAGCGTCCACAAAAGAAACCCTCCAAGAAGTCGCCCTACTTTC
TAAGGCAACCGAAGCCGGTTCAAAGGACCTCCCGTCTGACAGCGAAGATT
CCCGAGTTTGTCGTGTCATTCAACTTTTGGCCCACCAATGGACCGCCCGA
ATATGGCACTGAGGAAGAGGAGCCTTGGTATGCGCTGTACCGACTGAATC
CCGGCCAGCGACTGATCAAGAAAACCCTCTCCGAGACCCTGGAGCGTTAC
TTTAAATTGGCAGCAGTTGAGGGGAAGCAGGATGCGGAGGAAACCCAACA
AAGTCGGGAGCCCGAAGCCAACATGTGCTTGGTGCACAAGGGTCAGGTGT
TGCAGGCCCAGCTCCTGAGGGATGAACTGGCGGTCAAGGCGAGGGATCGC
TGCCTGGAACTCCTCGATGTGAACGAGCCATACGCCAAGCTTCGAAAGGC
CAGAATCGTGGCCCAGTTGGAGCACGACATCGACGTAATAATGGCCCGCC
ACCGAAACGCGATGCACTGCGACCAGACCAAGGTGCTGACCATCGAGAAT
TTTGACTGCGTGCTGTGCCAGCAGATGCTGGTATCGCAACCCTGGCCGGA
AACCAAGGGTCAGATTGGTCGGGCTCTGGTGGGCGAGGATTGTACCGTGG
CTCATACTACTGCATTCGATACTTACCGCGGAAAAAGGCTGGAGGGTGGT
GCGGAAAAGCCGAAAAAAAAGGATGGCACAGTAGCCCGTACCAGTGGAAT
CGATACTTGTCGCGGAAAAAGGCTGGAGGGAGGTGCAGAGAAGACGGATT
CCACAGTACCCCAACCGCCTGCAGAAAAGGGCCGCGGAAAGAGGCTAAAG
GGTGGTGGAGGAAAGCCGAAAAAAGACAAGAAGGGGAAAAAGGAGAAAAA
GGCTAAAGTAGTGGAACCGGAACCAGAAAATCCGAAGAAGCCGAAGGTAT
CGCCCTGGAAGCCACCGCCTCGCAAACTCGTTAGCGGCCCCTTCCGTATC
CACAACATCGACTTCAACGAGTACACACAGGTGTGTACGCAAGTAGTTGG
TCCTTCGGAGTGCGAGCTTCCTCCGGCTCCCAAAAAGTCGGCCGTATCTT
TTATCCTGGCCAAGGGAAAGATCGAAGGGAATGCACACAAGTGCGATATG
CGCATGCCCAATAACAGGCATGTGAAAACTAGGTTCTTCCGGGGACCCCG
TTCGAACAAGCCGTACCAGTTCAAATACCATCGGGTCTTCCAATCCGGCC
AACCGAAACCCTTTGATCTCAGTCATATTATGGCCAAGTCTTTTGTGAAG
GCGCTGGATCAGTCGGATGGGGACGAAGCCGATCCGTGTTACTTTAGGGA
GCTTTTGTCGGAGATGGTGATTGAGGACGAGGCGCCTCCGGATTCCAAGT
CTGAAGGCCTTCCCGAAACCGAGCCGGAGAAGAAATCGAAGCAGGACAGC
CAGCCCCCGTTGGAAATCTTTAGTGACCTGGATCAGACTAGAATCTCCGA
CAGTCGAGAGACCTTGGATCGTTCGAGCAACCACAGTGGTCGCAGCCATG
TGAACTACAAGGCGGAGATCGTGGATGCAGTAGTGAGATGTGCCAAGGCG
GTTTGGCAGAAGCGTACCCTAATAAAGCGGGCCGAGATGGAGCGCATGGG
CAGAATGACGCCGCGCAAGGCACTGACCCATAAGGATACGGAATCATTCG
ATCCGAACGATGCCGCCCAGATGGACAAGTTGCTAAAGGATGGCATGCGA
GTACTCAGGAAGGAGCCCCGCTATGTGCTGGCCTGTCTGCCAGACGCCCA
CAAGCTGCCAGTGCTGCGGGAGTGGGTCAAGAGGAGGTACGGCAAAACCT
ACAGCCAGAAGGAGCTCGAGGAGAGTATAGCCGAGTCGAGCAGGATATTC
GAGCTGGTCACCATCCTCCAGAGCAGTCCCGCCAGTCCCGATCTTATGGG
CATTGATCGCCTGCCCAGATCCAAGGAGAACTTTAACTTCTATAAGCAGA
TTAAGAATACGGCTGCCCTGGCTAAGCAAACATATCACGATCAGTTGAAT
GCCCGCTACCTAAGCATCGTGAGCTCCGCCTGGTACGCCATGGGCAACTA
TCTGGTGCCCGGAGGACCTCCTCGGAAGACCTTTTTCGCTTACATAGCTT
CCAATCCGCTGGAGATCATGCGTAACAAGACGTGGAATGGGGATTTCCGG
AACTACCGCTCCATGCGCGACAAGAGAAAGGAGCAGGAGAAGCTTTTGGG
CAAAAAGGACTAGAAGCTTTCTAGACCAT
BS31544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9861-RA | 2697 | CG9861-PA | 1..2697 | 17..2713 | 13485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9861-RA | 2848 | CG9861-RA | 119..2817 | 16..2714 | 13495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23323777..23324923 | 16..1162 | 5735 | 100 | Plus |
| 2R | 25286936 | 2R | 23325260..23326404 | 1318..2462 | 5725 | 100 | Plus |
| 2R | 25286936 | 2R | 23326461..23326714 | 2461..2714 | 1270 | 100 | Plus |
| 2R | 25286936 | 2R | 23324976..23325061 | 1162..1247 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 23325132..23325204 | 1246..1318 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:24:50 has no hits.
BS31544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:40 Download gff for
BS31544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9861-RA | 120..2816 | 17..2713 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:36 Download gff for
BS31544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9861-RA | 120..2816 | 17..2713 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:36 Download gff for
BS31544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9861-RA | 120..2816 | 17..2713 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:36 Download gff for
BS31544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23323778..23324923 | 17..1162 | 100 | -> | Plus |
| 2R | 23324977..23325060 | 1163..1246 | 100 | -> | Plus |
| 2R | 23325133..23325204 | 1247..1318 | 100 | -> | Plus |
| 2R | 23325261..23326403 | 1319..2461 | 100 | -> | Plus |
| 2R | 23326462..23326713 | 2462..2713 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:36 Download gff for
BS31544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19211301..19212446 | 17..1162 | 100 | -> | Plus |
| arm_2R | 19212500..19212583 | 1163..1246 | 100 | -> | Plus |
| arm_2R | 19212656..19212727 | 1247..1318 | 100 | -> | Plus |
| arm_2R | 19212784..19213926 | 1319..2461 | 100 | -> | Plus |
| arm_2R | 19213985..19214236 | 2462..2713 | 100 | | Plus |
BS31544.pep Sequence
Translation from 16 to 2712
> BS31544.pep
MSFQNKLDEYTRNLDLAKWYMGISAKQEATMSTMSESLRDDFEQGTGEKM
FKALISLGLQPVISKKKISRIVQLSRNNILAFLFFVMEGYYKTKQTDGVY
SINEQLLMNAIAKIDMLPTIRALDIVLPQPPVKKPDPQTQSLASLTTERP
QKKPSKKSPYFLRQPKPVQRTSRLTAKIPEFVVSFNFWPTNGPPEYGTEE
EEPWYALYRLNPGQRLIKKTLSETLERYFKLAAVEGKQDAEETQQSREPE
ANMCLVHKGQVLQAQLLRDELAVKARDRCLELLDVNEPYAKLRKARIVAQ
LEHDIDVIMARHRNAMHCDQTKVLTIENFDCVLCQQMLVSQPWPETKGQI
GRALVGEDCTVAHTTAFDTYRGKRLEGGAEKPKKKDGTVARTSGIDTCRG
KRLEGGAEKTDSTVPQPPAEKGRGKRLKGGGGKPKKDKKGKKEKKAKVVE
PEPENPKKPKVSPWKPPPRKLVSGPFRIHNIDFNEYTQVCTQVVGPSECE
LPPAPKKSAVSFILAKGKIEGNAHKCDMRMPNNRHVKTRFFRGPRSNKPY
QFKYHRVFQSGQPKPFDLSHIMAKSFVKALDQSDGDEADPCYFRELLSEM
VIEDEAPPDSKSEGLPETEPEKKSKQDSQPPLEIFSDLDQTRISDSRETL
DRSSNHSGRSHVNYKAEIVDAVVRCAKAVWQKRTLIKRAEMERMGRMTPR
KALTHKDTESFDPNDAAQMDKLLKDGMRVLRKEPRYVLACLPDAHKLPVL
REWVKRRYGKTYSQKELEESIAESSRIFELVTILQSSPASPDLMGIDRLP
RSKENFNFYKQIKNTAALAKQTYHDQLNARYLSIVSSAWYAMGNYLVPGG
PPRKTFFAYIASNPLEIMRNKTWNGDFRNYRSMRDKRKEQEKLLGKKD*
BS31544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9861-PA | 898 | CG9861-PA | 1..898 | 1..898 | 4708 | 100 | Plus |
| ssp5-PA | 711 | CG14735-PA | 10..323 | 17..330 | 438 | 35.1 | Plus |
| CG15548-PA | 814 | CG15548-PA | 35..802 | 19..863 | 327 | 21.2 | Plus |
| CG13127-PA | 734 | CG13127-PA | 8..301 | 10..305 | 288 | 27.6 | Plus |
| ssp5-PA | 711 | CG14735-PA | 456..702 | 626..860 | 278 | 29.2 | Plus |
| CG42820-PA | 689 | CG13394-PB | 11..330 | 14..306 | 274 | 28.1 | Plus |
| CG13127-PA | 734 | CG13127-PA | 463..731 | 608..887 | 244 | 28.2 | Plus |
