BS31553.complete Sequence
1568 bp assembled on 2012-09-28
GenBank Submission: KX803920
> BS31553.complete
GAAGTTATCAGTCGACATGTGGATATTGTTGGGTATCGCAGTGCTGATCA
TGACTTTAGTCTGGGATAATAGTCGCAAACAATGGAGAGTTAACACTTTT
GAAAAGTCCAGGATTTTGGGACCTTTTACGATCCCTATAGTGGGCAATGG
ACTGCAGGCCTTAACTTTGAGGCCAGAAAATTTTATTCAGAGGTTTGGTG
ACTACTTCAATAAATATGGCAAAACCTTCCGCCTGTGGATTCTAGGCGAG
TGTCTTATTTACACGAAGGATCTAAAATATTTTGAATCCATACTGAGTAG
TAGCACACTGCTCAAAAAAGCTCACCTCTACCGATTTCTGCGTGATTTTC
TTGGCGATGGACTTCTTTTAAGCACGGGAAATAAGTGGACTTCTCGCAGA
AAGGTTCTCGCACCTGCTTTTCACTTCAAATGCCTTGAAAACTTCGTCGA
GATAATGGATAGAAATAGTGGAATTATGGTGGAGAAATTGAAAAACTATG
CTGATGGCAAAACGTGCGTGGACCTATTCAAGTTTGTTTCTCTGGAAGCC
CTGGATGTGACCACAGAGACCGCCATGGGTGTCCAGGTGAATGCTCAGAA
CGAACCAAATTTCCCCTATACAAAAGCTCTTAAAAGTGTGGTTTATATCG
AGTCCAAACGATTGGCAAGTGTCTCGATGCGGTATAATTGGCTTTTCCCG
CTGGCGGCTCCTTTGGTTTATCGCCGTTTGCAAAAAGACATAGCTATAAT
GCAGGACTTTACTGACAAGGTCATTCGCGAACGACGAGCGATTCTGGAGC
GGGCCAGGGCGGATGGCACCTACAAGCCGCTGATAATGGGAGACGATGAT
ATCGGTGGTAAAGCTAAGATGACTTTGCTGGACATTCTGCTGCAAGCCAC
CATTGATAACAAGCCCTTAAGCGATGTGGATATCCGCGAGGAGGTGGACG
TTTTTATATTCGCAGGAGATGACACTACAACCAGTGGAGTGTCCCATGCA
CTACATGCGATATCCAGACATCCCAAGGTTCAGGAGTGCATCTACGAGGA
ACTAGTGTCTGTTCTGGGACCAGATCCCGACGCTTCAGTGACCCAAACCA
AGTTGTTGGAACTAAAGTATCTGGACTGCGTGATCAAGGAGACGATGCGT
TTGCATCCACCAGTTCCAATTCTCGGAAGATACATTCCCGAGGACTTGAA
AATTGGCGAAATAACCATTCCTGGCAACACAAGCATATTACTAATGCCCT
ACTATGTCTACCGAGATCCGGAATACTTTCCGGATCCTCTAGTCTTCAAG
CCGGAACGATGGATGGATATGAAAACCACCTCGAATACCCCACCTTTAGC
ATATATTCCGTTTAGTTCAGGGCCCAAGAACTGTATAGGGCAGAAATTCG
CCAACCTTCAAATGAAAGCGCTTATTAGTAAGGTCATTCGGCATTACGAA
CTTCTACCGCTTGGTGCGGATCTTAAAGCTACGTACACATTCATATTGAG
TTCCTCTACGGGAAATAATGTTGGCCTCAAGCCAAGAACAAGAGTTAAAT
GAAAGCTTTCTAGACCAT
BS31553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d21-RA | 1536 | CG6730-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| Cyp4d20-RA | 1533 | CG16761-PA | 199..1148 | 215..1164 | 685 | 71.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d21-RA | 1821 | CG6730-RA | 83..1618 | 17..1552 | 7680 | 100 | Plus |
| Cyp4d20-RA | 1817 | CG16761-RA | 339..1288 | 215..1164 | 685 | 71.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7606780..7607498 | 834..1552 | 3595 | 100 | Plus |
| 2L | 23513712 | 2L | 7605948..7606334 | 180..566 | 1935 | 100 | Plus |
| 2L | 23513712 | 2L | 7606521..7606719 | 635..833 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 7605682..7605844 | 17..179 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 2476788..2477085 | 1164..867 | 395 | 75.5 | Minus |
| 2L | 23513712 | 2L | 7606392..7606463 | 565..636 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:25:34 has no hits.
BS31553.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:44 Download gff for
BS31553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d21-RA | 83..1617 | 17..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:49 Download gff for
BS31553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d21-RA | 83..1617 | 17..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:53 Download gff for
BS31553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d21-RA | 83..1617 | 17..1551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:53 Download gff for
BS31553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7605682..7605844 | 17..179 | 100 | -> | Plus |
| 2L | 7605948..7606334 | 180..566 | 100 | -> | Plus |
| 2L | 7606394..7606463 | 567..636 | 100 | -> | Plus |
| 2L | 7606523..7606719 | 637..833 | 100 | -> | Plus |
| 2L | 7606780..7607497 | 834..1551 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:49 Download gff for
BS31553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7605682..7605844 | 17..179 | 100 | -> | Plus |
| arm_2L | 7605948..7606334 | 180..566 | 100 | -> | Plus |
| arm_2L | 7606394..7606463 | 567..636 | 100 | -> | Plus |
| arm_2L | 7606523..7606719 | 637..833 | 100 | -> | Plus |
| arm_2L | 7606780..7607497 | 834..1551 | 100 | | Plus |
BS31553.pep Sequence
Translation from 16 to 1551
> BS31553.pep
MWILLGIAVLIMTLVWDNSRKQWRVNTFEKSRILGPFTIPIVGNGLQALT
LRPENFIQRFGDYFNKYGKTFRLWILGECLIYTKDLKYFESILSSSTLLK
KAHLYRFLRDFLGDGLLLSTGNKWTSRRKVLAPAFHFKCLENFVEIMDRN
SGIMVEKLKNYADGKTCVDLFKFVSLEALDVTTETAMGVQVNAQNEPNFP
YTKALKSVVYIESKRLASVSMRYNWLFPLAAPLVYRRLQKDIAIMQDFTD
KVIRERRAILERARADGTYKPLIMGDDDIGGKAKMTLLDILLQATIDNKP
LSDVDIREEVDVFIFAGDDTTTSGVSHALHAISRHPKVQECIYEELVSVL
GPDPDASVTQTKLLELKYLDCVIKETMRLHPPVPILGRYIPEDLKIGEIT
IPGNTSILLMPYYVYRDPEYFPDPLVFKPERWMDMKTTSNTPPLAYIPFS
SGPKNCIGQKFANLQMKALISKVIRHYELLPLGADLKATYTFILSSSTGN
NVGLKPRTRVK*
BS31553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d21-PA | 511 | CG6730-PA | 1..511 | 1..511 | 2658 | 100 | Plus |
| Cyp4d20-PA | 510 | CG16761-PA | 1..510 | 1..511 | 1708 | 64.6 | Plus |
| Cyp4d14-PA | 507 | CG3540-PA | 1..505 | 1..507 | 1107 | 43.8 | Plus |
| Cyp4d14-PB | 510 | CG3540-PB | 1..508 | 1..507 | 1105 | 43.9 | Plus |
| Cyp4d2-PB | 501 | CG3466-PB | 33..500 | 35..507 | 1100 | 46.5 | Plus |
