BS31556.complete Sequence
833 bp assembled on 2012-10-29
GenBank Submission: KX801771
> BS31556.complete
GAAGTTATCAGTCGACATGCACGGCCTCCTCGGATCCGCCGGGGACTTCG
TGTCGGGCGGAAGGGGCAGATCCCTGGCGCTGGAGCTTCATGCCCGCTGC
TTTGACGTCTGGCTGGCGAACGCCAGGGGCACCACCCATTCCCGCGGGCA
CCGCACGCTCCAGACAAGTGACGCCCGCTTCTGGCGATTCAGCTGGCACG
AGATTGGCATCTACGACCTGCCCGCCATCGTGGATTACGTGCTGGCGAGG
ACGAATCGCCGCCAGCTGCACTACGTCGGGCACTCGCAGGGCACCACCGT
TCTCCTGGTGCTGCTCTCGCAGCGGCCGGAGTACAATGCGCGGTTCGCCA
ATGCCGCCCTGTTGGCTCCGGTGGCATTCCTCCAGCACCTGAGCAGTCCG
CCACTGCGGCTGCTGGCCAGCGACAGCTCCATGGCCACGCTGCTGCTGAA
CAAACTTGGCCTCCACGAACTTCTCCCGGCGTCGGCGCTGACCCAGGTGG
GCGGCCAGTTCTTCTGCACCGCCTCCCGGCCCACCTACGCCCTCTGCACC
CTCTTCACCTCCGTCTATGTGGGCTTCAGCGACTATCCATTGGATCGTGT
GAGTACGATTATATATGCGGGCCATAATTTAGCCAACAAAGCGCCCGAAA
CTTTTTTCCTCTTGTATGCAAAAGTTTTTATTGCACTCTGGAGTGGGACC
ACCTCCCGCCTCTCACCTACCATCCCCCCACCCCTCAAGGCCACTTCCCT
GAAACTCCCGGAAACAGACAAACATACGTACTATCGAGGGCCGAATGAGG
AAGGGCGGAGGCCTTAGAAGCTTTCTAGACCAT
BS31556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11406-RD | 801 | CG11406-PD | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG11406-RC | 801 | CG11406-PC | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG11406-RB | 1191 | CG11406-PB | 211..792 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11406-RD | 4502 | CG11406-RD | 289..1089 | 17..817 | 4005 | 100 | Plus |
| CG11406-RC | 4430 | CG11406-RC | 289..1089 | 17..817 | 4005 | 100 | Plus |
| CG11406-RB | 1361 | CG11406-RB | 211..792 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24206226..24206652 | 443..17 | 2120 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24205592..24205970 | 817..439 | 1895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:58:19 has no hits.
BS31556.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-29 14:00:03 Download gff for
BS31556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11406-RC | 272..1072 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:00 Download gff for
BS31556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11406-RC | 289..1089 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:18 Download gff for
BS31556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11406-RC | 289..1089 | 17..817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:18 Download gff for
BS31556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24205592..24205969 | 440..817 | 100 | <- | Minus |
| 2R | 24206230..24206652 | 17..439 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:00 Download gff for
BS31556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20093115..20093492 | 440..817 | 100 | <- | Minus |
| arm_2R | 20093753..20094175 | 17..439 | 100 | | Minus |
BS31556.pep Sequence
Translation from 16 to 816
> BS31556.pep
MHGLLGSAGDFVSGGRGRSLALELHARCFDVWLANARGTTHSRGHRTLQT
SDARFWRFSWHEIGIYDLPAIVDYVLARTNRRQLHYVGHSQGTTVLLVLL
SQRPEYNARFANAALLAPVAFLQHLSSPPLRLLASDSSMATLLLNKLGLH
ELLPASALTQVGGQFFCTASRPTYALCTLFTSVYVGFSDYPLDRVSTIIY
AGHNLANKAPETFFLLYAKVFIALWSGTTSRLSPTIPPPLKATSLKLPET
DKHTYYRGPNEEGRRP*
BS31556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11406-PD | 266 | CG11406-PD | 1..266 | 1..266 | 1394 | 100 | Plus |
| CG11406-PC | 266 | CG11406-PC | 1..266 | 1..266 | 1394 | 100 | Plus |
| CG11406-PA | 326 | CG11406-PA | 1..194 | 1..194 | 1012 | 100 | Plus |
| CG11406-PB | 396 | CG11406-PB | 71..264 | 1..194 | 1012 | 100 | Plus |
| Lip3-PA | 394 | CG8823-PA | 75..267 | 1..193 | 407 | 42.5 | Plus |
