BS31557.complete Sequence
3110 bp assembled on 2012-09-28
GenBank Submission: KX801737
> BS31557.complete
GAAGTTATCAGTCGACATGTATGCAGCGAAAAACGTACGCCCGCGCAGCA
GTCTCTCCACAGACGACAATCACCGGATCAAGGACACCAATCGGCCCCAC
AAGGCCCGCAGCAACACGATCCTGACCCTCGCCGCATTCTGCGTCTTTCT
GCTAGTCCTCTGCGGCTTCCTGCTGGGCGCCCTCGTCTACGTCGGCAAGA
ATATAGCCGAGGAGCACCAGAGGCAGCAGCACGCGAATGCTTCCCAGTGG
GCCTTGAACTCCACCATCCGCACAGTTTACGTGGATCGGGACCAGTTGCT
ATCCACCAAGCCCATTATCAGCGTACTTTCAGATAATCGCTTTTACACGA
CTCAAGTGCCAACCAGCAAAAAATCGAGCATAATGGCAACTGTGGCGCCC
GCTGTAAAAGCCGCGAGCAAGGTGCTCCAGAATCTGGGATTCCGGCTGCC
CAAACAGATTAAGCCAAGCAAGTACCGCCTTCATTTGCGCCCCGATCTCG
AACGAAAGAACTATTCCGGCAATATAAGCATCAGCCTGCAAGTACTGGAG
CCCATAGCCTTCATCCCAGTCCATGTGAAGCAACTGAATGTGAGCACCGT
TGAGGTGAAGCGCCTGGATGAATCTGGAGCGCCGCTTAAGGACATCACCC
CCACGCTGACCTTTGCCCATCCGGAGTTTGAGTACTGGGTGACCGAGTTC
GAACAGCCGCTGGAGGCGGGAAACTACTCACTGCTGCTCAACTTTACGGG
ATCGCTTGTAGATCGGATTACGGGGATGTACCAGAGCTCCTACTTGGATA
AGCTGAAAAACCGCTCCAGATCAATCATTTCCACAAAGTTTGAGCCCACT
TATGCCCGCCAAGCATTCCCCTGCTTCGATGAGCCCGCCCTTAAGGCTCA
GTTCACCATAACGGTGGCCCGTCCAAGTGGTGATGAGTACCATGTGCTGT
CCAACATGCCAGTGGCCAGCGAGTATGTCGATGGCGATATCACCGAGGTG
ACTTTCGCGGAGACCGTACCCATGAGCACCTATCTGGCCGCCTTTGTGGT
GTCTGATTTTCAATACAAGGAAACCACTGTGGAGGGAACCAGCATCGCTC
TGAAAGTCTATGCGCCACCAGCGCAGGTGGAGAAAACCCAGTACGCCCTG
GACACTGCGGCCGGAGTGATGGCCTACTACATCAACTATTTCAATGTTTC
GTATGCCCTACCCAAATTGGATCTGGTTGCCATACCCGATTTCGTGTCCG
GTGCTATGGAAAACTGGGGATTGGTCACGTTCCGGGAGACGGCTCTTCTG
TACGACGAATCTACCAGTTCCAGCGTGAATAAGCAGCGTGTGGCCATCGT
CGTGGCCCATGAGTTGGCTCACCAGTGGTTCGGAAACCTGGTAACCATGA
ACTGGTGGAACGATTTGTGGCTAAACGAGGGTTTCGCATCATTCCTTGAG
TACAAGGGAGTAAAGCAAATGCATCCGGAATGGGATATGGACAATCAGTT
TGTTATTGAGGAACTGCACCCGGTGCTGACCATTGATGCCACCTTAGCCT
CCCATCCGATTGTCAAGTCCATTGAGAGTCCAGCCGAGATCACGGAGTAC
TTCGATACCATCACCTATTCAAAGGGAGCCGCCTTAGTACGCATGCTTGA
GAATCTGGTGGGCGAGGAAAAGTTGAGGAACGCCACCACCCGCTATTTGG
TGCGTCATATCTACAGTACTGCCACCACCGAGGATTACCTCACCGCAGTC
GAGGAGGAGGAGGGCCTGGAATTTGACGTGAAGCAGATCATGCAGACCTG
GACGGAGCAGATGGGTCTTCCGGTTGTGGAGGTGGAGAAAAGTGGCAGTA
CTTATAAGCTCACCCAAAAGCGTTTCCTGGCCAACGAAGATGACTACGCA
GCCGAAGCTGAAGCATCGTCCTTCAACTACCGTTGGTCGATTCCCATTAC
CTACACGAGCAGCATCAACAGTGAAGTCCAATCACTAATATTCAACCACA
ATGACAATGAGGCCACCATAACGCTTCCGGAAGAGGCCAGCTGGATTAAG
ATTAACACGAATCAAGTGGGCTACTACCGGGTGAACTACGGCAGCGAACA
GTGGGCGGAACTCATATCGGCCCTGAAGAACTCCCGGGAAACCTTCAGCA
CCGCCGATCGCGCTCATCTGCTGAACGATGCCAATACCCTGGCCGCTGCC
GGACAGCTTAACTACTCCGTGGCACTGGATCTGATATCTTACCTGGAGAG
CGAGCAGGACTACGTGCCCTGGAGCGTAGGCACCTCCGCCCTGGCTACGT
TAAGGAACCGCGTATACTACACGGACTTGTACACTAATTACACCACCTAC
GCCCGTAAACTGCTTACGCCCATCGTAGAAAAGGTCACGTTTACCGTGGC
AGCCGATCATCTGGAAAATCGCCTCCGTATTAAGGTGCTGAGCTCAGCCT
GCAGCTTGGGACATGAGAGCTCCTTGCAACAGGCGGTCACGCTCTTCAAC
CAGTGGCTAGCCAGCCCCGAGACCCGGCCCAATCCGGATATCCGAGACGT
TGTCTACTACTATGGTCTGCAACAGGTGAACACAGAGGCTGCCTGGGATC
AAGTTTGGAAGCTGTATCTGGACGAGAGTGATGCCCAGGAAAAGCTGAAG
TTGATGAACTGCCTAACCGCCGTGCAGGTGCCATGGCTGTTGCAGCGTTA
CATCAACTGGGCCTGGGATGAGAGCAATGTCCGCCGCCAGGACTACTTCA
CCCTGCTTGGATATATATCCACCAATCCGGTGGGTCAGAGTCTTGTGTGG
GATTACGTGCGTGAAAACTGGGAGAAGTTGGTGGATCGTTTCGGCATCAA
TGAACGCACCTTGGGTCGTCTGATCCCCACGATCACTGCCCGCTTCTCAA
CAGAAACCAAGCTGGAAGAGATGCAGCAGTTCTTTGCCAAATATCCCGAG
GCTGGAGCCGGAACTGCGGCCCGTCAACAGGCGTTGGAAGCGGTGAAGGC
AAACATCAAATGGCTAGCGGCCAACAAGGCCCAGGTGGGCGAATGGTTGG
CCAATTACGTTCAACAGTCCAGCGTCACCAACCGCATTCAGTGAAAGCTT
TCTAGACCAT
BS31557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RC | 3078 | CG32473-PC | 1..3078 | 17..3094 | 15390 | 100 | Plus |
| CG32473-RB | 2712 | CG32473-PB | 1..2712 | 383..3094 | 13560 | 100 | Plus |
| CG32473-RA | 3039 | CG32473-PA | 763..3039 | 818..3094 | 11385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RC | 3635 | CG32473-RC | 400..3478 | 16..3094 | 15395 | 100 | Plus |
| CG32473-RB | 3002 | CG32473-RB | 82..2845 | 331..3094 | 13820 | 100 | Plus |
| CG32473-RA | 3273 | CG32473-RA | 840..3116 | 818..3094 | 11385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13310143..13311109 | 817..1783 | 4835 | 100 | Plus |
| 3R | 32079331 | 3R | 13311953..13312628 | 2419..3094 | 3380 | 100 | Plus |
| 3R | 32079331 | 3R | 13311404..13311895 | 1927..2418 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 13309467..13309955 | 331..819 | 2445 | 100 | Plus |
| 3R | 32079331 | 3R | 13308588..13308904 | 16..332 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 13311174..13311317 | 1783..1926 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 13313341..13313573 | 1416..1659 | 595 | 84.8 | Plus |
| 3R | 32079331 | 3R | 13313710..13313973 | 1927..2208 | 545 | 81.2 | Plus |
| 3R | 32079331 | 3R | 29247180..29247288 | 1437..1329 | 320 | 86.2 | Minus |
| 3R | 32079331 | 3R | 13300347..13300431 | 1353..1437 | 305 | 90.6 | Plus |
| 3R | 32079331 | 3R | 13297841..13298076 | 2738..2973 | 280 | 74.6 | Plus |
| 3R | 32079331 | 3R | 13295918..13296098 | 1211..1391 | 245 | 75.7 | Plus |
| 3R | 32079331 | 3R | 29242633..29242712 | 1437..1358 | 220 | 85 | Minus |
| 3R | 32079331 | 3R | 29236928..29237007 | 1431..1352 | 205 | 83.8 | Minus |
| 3R | 32079331 | 3R | 29143469..29143569 | 1331..1431 | 190 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:25:51 has no hits.
BS31557.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:46 Download gff for
BS31557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 399..3475 | 17..3093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:54 Download gff for
BS31557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 401..3477 | 17..3093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:56 Download gff for
BS31557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 401..3477 | 17..3093 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:56 Download gff for
BS31557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13308589..13308904 | 17..332 | 100 | -> | Plus |
| 3R | 13309469..13309955 | 333..819 | 100 | -> | Plus |
| 3R | 13310146..13311108 | 820..1782 | 100 | -> | Plus |
| 3R | 13311174..13311317 | 1783..1926 | 100 | -> | Plus |
| 3R | 13311404..13311895 | 1927..2418 | 100 | -> | Plus |
| 3R | 13311953..13312627 | 2419..3093 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:54 Download gff for
BS31557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9134311..9134626 | 17..332 | 100 | -> | Plus |
| arm_3R | 9135191..9135677 | 333..819 | 100 | -> | Plus |
| arm_3R | 9135868..9136830 | 820..1782 | 100 | -> | Plus |
| arm_3R | 9136896..9137039 | 1783..1926 | 100 | -> | Plus |
| arm_3R | 9137126..9137617 | 1927..2418 | 100 | -> | Plus |
| arm_3R | 9137675..9138349 | 2419..3093 | 100 | | Plus |
BS31557.pep Sequence
Translation from 16 to 3093
> BS31557.pep
MYAAKNVRPRSSLSTDDNHRIKDTNRPHKARSNTILTLAAFCVFLLVLCG
FLLGALVYVGKNIAEEHQRQQHANASQWALNSTIRTVYVDRDQLLSTKPI
ISVLSDNRFYTTQVPTSKKSSIMATVAPAVKAASKVLQNLGFRLPKQIKP
SKYRLHLRPDLERKNYSGNISISLQVLEPIAFIPVHVKQLNVSTVEVKRL
DESGAPLKDITPTLTFAHPEFEYWVTEFEQPLEAGNYSLLLNFTGSLVDR
ITGMYQSSYLDKLKNRSRSIISTKFEPTYARQAFPCFDEPALKAQFTITV
ARPSGDEYHVLSNMPVASEYVDGDITEVTFAETVPMSTYLAAFVVSDFQY
KETTVEGTSIALKVYAPPAQVEKTQYALDTAAGVMAYYINYFNVSYALPK
LDLVAIPDFVSGAMENWGLVTFRETALLYDESTSSSVNKQRVAIVVAHEL
AHQWFGNLVTMNWWNDLWLNEGFASFLEYKGVKQMHPEWDMDNQFVIEEL
HPVLTIDATLASHPIVKSIESPAEITEYFDTITYSKGAALVRMLENLVGE
EKLRNATTRYLVRHIYSTATTEDYLTAVEEEEGLEFDVKQIMQTWTEQMG
LPVVEVEKSGSTYKLTQKRFLANEDDYAAEAEASSFNYRWSIPITYTSSI
NSEVQSLIFNHNDNEATITLPEEASWIKINTNQVGYYRVNYGSEQWAELI
SALKNSRETFSTADRAHLLNDANTLAAAGQLNYSVALDLISYLESEQDYV
PWSVGTSALATLRNRVYYTDLYTNYTTYARKLLTPIVEKVTFTVAADHLE
NRLRIKVLSSACSLGHESSLQQAVTLFNQWLASPETRPNPDIRDVVYYYG
LQQVNTEAAWDQVWKLYLDESDAQEKLKLMNCLTAVQVPWLLQRYINWAW
DESNVRRQDYFTLLGYISTNPVGQSLVWDYVRENWEKLVDRFGINERTLG
RLIPTITARFSTETKLEEMQQFFAKYPEAGAGTAARQQALEAVKANIKWL
AANKAQVGEWLANYVQQSSVTNRIQ*
BS31557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-PC | 1025 | CG32473-PC | 1..1025 | 1..1025 | 5297 | 100 | Plus |
| CG32473-PB | 903 | CG32473-PB | 1..903 | 123..1025 | 4675 | 100 | Plus |
| CG32473-PA | 1012 | CG32473-PA | 107..1012 | 115..1025 | 4023 | 86.9 | Plus |
| CG8773-PB | 994 | CG8773-PB | 98..989 | 116..1011 | 2583 | 55.5 | Plus |
| CG8774-PB | 885 | CG8774-PB | 9..885 | 142..1024 | 2158 | 47.6 | Plus |
