BS31560.complete Sequence
2063 bp assembled on 2012-09-28
GenBank Submission: KX802059
> BS31560.complete
GAAGTTATCAGTCGACATGGCGTGTCCTTTCTTCAGGCGTGCGGACTCGC
TGACACGCCAGCCCTCGGTCATCGCCGAGCCTGGTGGCCACTGGGCGCTC
GAGGACGAGGAGCTCTCGGACGACGCCCTGACCCTCACCCACCTCCAGAT
GGCCATCCAGCTGCTGACGGCGCCGTCGAACGAGGATCTCAACACGGCTG
TAACGTCTTTGGTGGCCAAGTACCGCCAGAACTGGCCCAATATCCACAAG
CTCAAACTGGATCCGCAAACCTTCAAGAGCTGTGCCAACTATGACTACTT
GGCGGACATCCAGGAGCTGCTGCTGAAGATGGACGAGGCCAGCGCCAGCG
AGATTCTGGTGCTGCTCGGCGAGGAGCTGATCACCTGCTGCTGCACAGGT
ATCATTGAAAGAGCCTTCCGCTGCCTGGGCACCGATCTGCAGGAATTCCT
GGGCTCCCTCGATGGCGTTTACGATGTGCTGAAGCTGCAGGAGGAGGACG
TCACCGATACCGGATTCGTGTGTGCCGGCGAGGGCGAGCTGATCTTCACC
TCGGAGCGCCCGGTCATTGCCTGGTTGCTCCTGGGCTCCCTGAAGGCGCT
CACCCGCATGCTCTACAAGGTGGACGTGAACATCAAGATCGAGCCCGTGG
AGGGCGATGCCCGGCGGTATCGCTACCTCTTCTCGCTGGTCAAGGACAAC
TCCCAGACCATGCTGATGGGTCGTCCCACTTCCGTGAGCAAAACCATCCC
GGAAACGGTGCAGCGGAGCAACTCGAGCAACGCCTCCGACCTGCAAATGA
ACTCGTCCAGCTTCTGCAAGATGTTTCCCTGGCACTTCATCATGAACGAG
CAGCTGGAACTGGTGCAGTTGGGCAGGGGATTCAGCAAATTGTACAAGCC
CTACATGGCGGACTTTGGTTGCCAGGCGACCACCTACTTTGATTTCAAAC
GACCCAAGGGATTGACCATGAAATTCCGGGACATCGTGAGGCGCACCTAC
ACGCCTTTCCTGATCGGTTTGAATAATCCGCCGGGCGCTGTGGATTTCCC
GGCCATTGGACTGGAGATCAAGGGACAGATGGTGCACTGTCCCGAGTCCA
ATTCGTTGCTCTTCATTGGATCCCCCTTCCTGGACGGCCTGGATGGGTTG
ACCTGCAACGGACTCTTCATCTCGGACATACCGCTGCACGACGCCACCAG
GGAGGTGATCCTGGTGGGCGAACAGGCTCGGGCCCAGGATGGACTGCGCC
GGCGCATGGACAAGATCAAGAACAGCATTGAGGAGGCCAACTCGGCGGTG
ACCAAGGAGCGGAAGAAGAACGTCAGTCTGCTGCACCTCATCTTTCCCGC
GGAGATCGCCGAGAAGCTTTGGCTGGGCTCCTCCATTGACGCCAAGACGT
ATCCCGATGTTACGATCCTGTTCAGCGACATCGTTGGCTTCACTAGCATC
TGCTCGCGGGCCACTCCCTTCATGGTGATCAGCATGCTGGAGGGGCTGTA
CAAGGACTTCGACGAGTTCTGCGACTTCTTCGACGTGTACAAGGTGGAGA
CCATCGGGGATGCCTACTGCGTGGCCAGTGGACTCCACCGAGCCTCCATC
TACGACGCCCACAAGGTTGCCTGGATGGCCCTGAAGATGATCGACGCCTG
CTCGAAGCACATTACCCACGACGGCGAGCAAATTAAAATGAGGATCGGCC
TGCACACGGGCACTGTCTTGGCGGGAGTGGTGGGCAGGAAGATGCCCAGG
TATTGCCTCTTCGGGCACAGCGTCACCATCGCCAACAAGTTCGAGTCGGG
CAGCGAGGCGCTGAAGATTAATGTTAGCCCAACCACCAAGGATTGGCTGA
CCAAGCACGAGGGCTTTGAGTTTGAGCTGCAGCCGCGGGATCCATCGTTC
CTGCCCAAGGAATTCCCCAATCCCGGCGGCACCGAGACCTGCTACTTCCT
GGAGAGCTTCCGCAACCCGGCTTTGGACAGCGAGCTGCCGCTGGTGGAGC
ACATCAATGTGTCCATGAAGACCATATCCGAGGGCGGCGATGCCTAGAAG
CTTTCTAGACCAT
BS31560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gycalpha99B-RA | 2031 | CG1912-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gycalpha99B-RA | 2354 | CG1912-RA | 176..2211 | 13..2048 | 10180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29683997..29685347 | 492..1842 | 6755 | 100 | Plus |
| 3R | 32079331 | 3R | 29683698..29683939 | 253..494 | 1210 | 100 | Plus |
| 3R | 32079331 | 3R | 29683398..29683637 | 13..252 | 1200 | 100 | Plus |
| 3R | 32079331 | 3R | 29685410..29685615 | 1843..2048 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:25:03 has no hits.
BS31560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:42 Download gff for
BS31560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gycalpha99B-RA | 181..2211 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:41 Download gff for
BS31560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gycalpha99B-RA | 180..2210 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:41 Download gff for
BS31560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gycalpha99B-RA | 180..2210 | 17..2047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:41 Download gff for
BS31560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29683402..29683637 | 17..252 | 100 | -> | Plus |
| 3R | 29683698..29683938 | 253..493 | 100 | -> | Plus |
| 3R | 29683999..29685347 | 494..1842 | 100 | -> | Plus |
| 3R | 29685410..29685614 | 1843..2047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:41 Download gff for
BS31560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25511132..25511336 | 1843..2047 | 100 | | Plus |
| arm_3R | 25509124..25509359 | 17..252 | 100 | -> | Plus |
| arm_3R | 25509420..25509660 | 253..493 | 100 | -> | Plus |
| arm_3R | 25509721..25511069 | 494..1842 | 100 | -> | Plus |
BS31560.pep Sequence
Translation from 16 to 2046
> BS31560.pep
MACPFFRRADSLTRQPSVIAEPGGHWALEDEELSDDALTLTHLQMAIQLL
TAPSNEDLNTAVTSLVAKYRQNWPNIHKLKLDPQTFKSCANYDYLADIQE
LLLKMDEASASEILVLLGEELITCCCTGIIERAFRCLGTDLQEFLGSLDG
VYDVLKLQEEDVTDTGFVCAGEGELIFTSERPVIAWLLLGSLKALTRMLY
KVDVNIKIEPVEGDARRYRYLFSLVKDNSQTMLMGRPTSVSKTIPETVQR
SNSSNASDLQMNSSSFCKMFPWHFIMNEQLELVQLGRGFSKLYKPYMADF
GCQATTYFDFKRPKGLTMKFRDIVRRTYTPFLIGLNNPPGAVDFPAIGLE
IKGQMVHCPESNSLLFIGSPFLDGLDGLTCNGLFISDIPLHDATREVILV
GEQARAQDGLRRRMDKIKNSIEEANSAVTKERKKNVSLLHLIFPAEIAEK
LWLGSSIDAKTYPDVTILFSDIVGFTSICSRATPFMVISMLEGLYKDFDE
FCDFFDVYKVETIGDAYCVASGLHRASIYDAHKVAWMALKMIDACSKHIT
HDGEQIKMRIGLHTGTVLAGVVGRKMPRYCLFGHSVTIANKFESGSEALK
INVSPTTKDWLTKHEGFEFELQPRDPSFLPKEFPNPGGTETCYFLESFRN
PALDSELPLVEHINVSMKTISEGGDA*
BS31560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gycalpha99B-PA | 676 | CG1912-PA | 1..676 | 1..676 | 3537 | 100 | Plus |
| Gyc88E-PF | 1090 | CG4154-PF | 83..564 | 131..608 | 586 | 30.8 | Plus |
| Gyc88E-PE | 1097 | CG4154-PE | 83..564 | 131..608 | 586 | 30.8 | Plus |
| Gyc88E-PD | 1097 | CG4154-PD | 83..564 | 131..608 | 586 | 30.8 | Plus |
| Gycbeta100B-PA | 787 | CG1470-PA | 328..714 | 261..645 | 526 | 32.2 | Plus |
