BS31568.complete Sequence
1073 bp assembled on 2012-08-22
GenBank Submission: KX805724
> BS31568.complete
GAAGTTATCAGTCGACATGTCTCGTCGTTCGACCGTTTTATCAACTGGTA
AGGAGAGCTCCAAGGAGGAAAAGAATCGAATGTCCCAATTGGACGTTATT
ATCGGTCAACTGAAGACGATGGCGGTTGGAAACCGGAGGGCCGGAAATCT
ATCCGAGGCCACCATCACATATATATGCCAGGCGAGCCGAGAGCTGTTTC
TATCCCAGCCGATGCTCCTCGAACTGAGTGCTCCGGTAAAGATCTGCGGG
GATCTGCACGGTCAGTTCAAGGATCTATTGAGGATATTCCAGCAGTGCGG
TGTGCCACCGCTTTCAAACTACCTATTCCTTGGGGATTACGTGGATCGGG
GTCACTGCTCCATCGAGACTTTATCGCTGCTGTTGACCTATAAGCTTCGC
TATCCGGAGACTTTCTTCCTGCTGCGCGGCAATCATGAATCGGCGGATTT
GAATCGGGTATATGGGTTTTTCGACGAGTGCAAGCGACGATATAGCATCA
AGTTGTGGCGCTCCTTTGTCGATTGCTATGACTGCATGCCAGTGGCCGCC
ATCATAGCCGATCGCATCTTTTGCGTCCACGGCGGACTGAGTCCGGATCT
GAATAACCTGGATGACATCCGGCGGCTGAATCGCCCCACCGATGTGCCCA
GCGATGGGCTGCTGTGCGATTTGCTTTGGTCGGATCCGGATGAGACCACC
GGAACGTGGGCGTCCAACGATCGAGGTGTCAGCTTCACCTTTGGAGCCAA
CATAGTGGAGGGCTTCCTCATGCAGCACAAGTTTAACCTGATTGTCCGCG
CCCACCAAGTGGTCGAGGATGGCTACGAGTTCTTCGCCGACCGCCAGTTG
GTCACCATTTTCTCGGCCCCGAACTACTGCGACATCTTTGATAACTGCGG
AGCTGTTCTGGTGGTGGACGCCAAACTGGTCTGCCACTTTGTCATCATCC
GTCCGAGACCGTTTTCGCGACCCACGGGCTTTGAGTCGGATAGTGGATCT
ACAGCTACGGCGACCAATGGACCACCGCCGTCCATGAGGGAGAAGAGGCT
TTATTAGAAGCTTTCTAGACCAT
BS31568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpD5-RA | 1041 | CG10138-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
| PpD6-RA | 1011 | CG8822-PA | 423..608 | 418..603 | 345 | 79 | Plus |
| Pp1-87B-RA | 909 | CG5650-PA | 338..814 | 405..881 | 345 | 71.5 | Plus |
| PpD6-RA | 1011 | CG8822-PA | 805..881 | 800..876 | 220 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpD5-RA | 1279 | CG10138-RA | 93..1133 | 17..1057 | 5205 | 100 | Plus |
| PpD6-RA | 1327 | CG8822-RA | 471..656 | 418..603 | 345 | 79 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 567..1043 | 405..881 | 345 | 71.5 | Plus |
| PpD6-RA | 1327 | CG8822-RA | 853..929 | 800..876 | 220 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22041813..22042853 | 1057..17 | 5205 | 100 | Minus |
| 3R | 32079331 | 3R | 12424875..12425351 | 881..405 | 345 | 71.5 | Minus |
| 2L | 23513712 | 2L | 3110142..3110327 | 418..603 | 345 | 79 | Plus |
| 2R | 25286936 | 2R | 21881590..21881668 | 881..803 | 290 | 91.1 | Minus |
| X | 23542271 | X | 15359524..15359944 | 881..461 | 245 | 70.5 | Minus |
| 2L | 23513712 | 2L | 3110524..3110600 | 800..876 | 220 | 85.7 | Plus |
| 2R | 25286936 | 2R | 17955681..17955765 | 881..797 | 215 | 83.5 | Minus |
| 2R | 25286936 | 2R | 21881870..21881999 | 601..472 | 185 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:34:37 has no hits.
BS31568.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:51 Download gff for
BS31568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpD5-RA | 30..1070 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:01 Download gff for
BS31568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpD5-RA | 93..1133 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:12 Download gff for
BS31568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpD5-RA | 93..1133 | 17..1057 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:12 Download gff for
BS31568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22041813..22042853 | 17..1057 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:01 Download gff for
BS31568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17929318..17930358 | 17..1057 | 100 | | Minus |
BS31568.pep Sequence
Translation from 16 to 1056
> BS31568.pep
MSRRSTVLSTGKESSKEEKNRMSQLDVIIGQLKTMAVGNRRAGNLSEATI
TYICQASRELFLSQPMLLELSAPVKICGDLHGQFKDLLRIFQQCGVPPLS
NYLFLGDYVDRGHCSIETLSLLLTYKLRYPETFFLLRGNHESADLNRVYG
FFDECKRRYSIKLWRSFVDCYDCMPVAAIIADRIFCVHGGLSPDLNNLDD
IRRLNRPTDVPSDGLLCDLLWSDPDETTGTWASNDRGVSFTFGANIVEGF
LMQHKFNLIVRAHQVVEDGYEFFADRQLVTIFSAPNYCDIFDNCGAVLVV
DAKLVCHFVIIRPRPFSRPTGFESDSGSTATATNGPPPSMREKRLY*
BS31568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpD5-PA | 346 | CG10138-PA | 1..346 | 1..346 | 1834 | 100 | Plus |
| Pp1-Y2-PC | 313 | CG40448-PC | 14..300 | 29..313 | 1051 | 67.6 | Plus |
| Pp1alpha-96A-PB | 327 | CG6593-PB | 7..296 | 25..313 | 1039 | 65.1 | Plus |
| Pp1alpha-96A-PA | 327 | CG6593-PA | 7..296 | 25..313 | 1039 | 65.1 | Plus |
| Pp1-87B-PA | 302 | CG5650-PA | 7..296 | 25..313 | 1035 | 65.1 | Plus |
