BS31571.complete Sequence
1169 bp assembled on 2012-08-22
GenBank Submission: KX802443
> BS31571.complete
GAAGTTATCAGTCGACATGAAATACTTGTATCTTCTTTTGTTGGCCACCT
CAGTAGAGAGCGGGTTTTGGGAGGACTTTTATCGAATTCTAGCATCGCAG
AATGCAAAAAGGAACCTCATTTATTCGCCGATATCTGCTGAGATTATTAT
GAGCATGGTTTATATGGCATCAGGTGGAAAAACGTTCGAAGAGCTTAGAA
ACGTTTTGAAATTTTCTGAGAACAAAACACTTGTGGCAAACAACTATCGT
AGCCTTTTAAGCGATCTTAAGCGCCGCGAAACGTTTATTATCCTGCATAT
GGCAAACCGGATATATGTGAACAAGAAATATTGCCTTGTACCGGAATTTA
ACCAGTTGGCACGAAAGGCCTTCAAGGCCAAAGCCAAGTCGATCCGTCTA
GACGATCCAGTCAGTGCGTCTGCGATAGTCAATAGCTGGATATTAAATCG
AACGCGTGGCATGATCCGGAACATAGTTTTACCTAAGGACTTTAATTCGG
ATACAAGTGCGTTTCTGGTGAATGCAATCTACTTCAAGGGCCAGTGGCTG
TATAACTTCAAGGCCGACCAAACTCATATAGCCGACTTCTATGTATCAGC
TAACGAAATTATTCCGGTGAAGATGATGACTTTGTCTGCATCCCTACTAT
CAGGATACATCGATGACATTGATGCAAAGATTATCGAACTACCCTACTGG
AACTCAACTCTTTCTATGCGCATCATTCTGCCCAATAGTGTTGATGGTCT
TAGAAAACTGAAAGAGAAAGTTGGTTTTATTGACTATCATTTGGAAAAAA
AATCCGTAAATGTTAAACTGCCCAAGTTCAAAATCGAATCTAAAGCACAA
CTAAAGGGAATTTTTGAAAATTTAGGCATTCTAGATGTATTTAAGCCCTC
AGCTGACTTAAATGGGCTCGTCCTAGAATCTGGTGCTAAGATCGATAAAA
TTGTGCAAAAGGCCTTTCTGAAGATCGATGAAAAGGGTGGCGAAGCTTCT
GCGGCAACAGGTGTTCTTACTCGCCGAAAGAAGTCCATTGACAATTTAAT
ACAGCCTCCAATGGAGTTTATAGCTGATCATCCGTTTTTCTACGTAATTC
ATGACAACAAAGTCATTTACTTTCAGGGTCACATCGTTGAACCACGCTGG
TAAAAGCTTTCTAGACCAT
BS31571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28B-RB | 1137 | CG6717-PB | 1..1137 | 17..1153 | 5685 | 100 | Plus |
| Spn28B-RA | 1137 | CG6717-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28B-RB | 1186 | CG6717-RB | 12..1148 | 17..1153 | 5685 | 100 | Plus |
| Spn28B-RA | 1248 | CG6717-RA | 12..1148 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7582005..7582846 | 30..871 | 4210 | 100 | Plus |
| 2L | 23513712 | 2L | 7583089..7583233 | 1009..1153 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 7582899..7583040 | 872..1013 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:33:59 has no hits.
BS31571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:49 Download gff for
BS31571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn7-RA | 4..1138 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:52 Download gff for
BS31571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28B-RA | 12..1146 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:59 Download gff for
BS31571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28B-RA | 12..1146 | 17..1151 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:59 Download gff for
BS31571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7582005..7582846 | 30..871 | 100 | -> | Plus |
| 2L | 7582899..7583037 | 872..1010 | 100 | -> | Plus |
| 2L | 7583091..7583231 | 1011..1151 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:52 Download gff for
BS31571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7582005..7582846 | 30..871 | 100 | -> | Plus |
| arm_2L | 7582899..7583037 | 872..1010 | 100 | -> | Plus |
| arm_2L | 7583091..7583231 | 1011..1151 | 100 | | Plus |
BS31571.pep Sequence
Translation from 16 to 1152
> BS31571.pep
MKYLYLLLLATSVESGFWEDFYRILASQNAKRNLIYSPISAEIIMSMVYM
ASGGKTFEELRNVLKFSENKTLVANNYRSLLSDLKRRETFIILHMANRIY
VNKKYCLVPEFNQLARKAFKAKAKSIRLDDPVSASAIVNSWILNRTRGMI
RNIVLPKDFNSDTSAFLVNAIYFKGQWLYNFKADQTHIADFYVSANEIIP
VKMMTLSASLLSGYIDDIDAKIIELPYWNSTLSMRIILPNSVDGLRKLKE
KVGFIDYHLEKKSVNVKLPKFKIESKAQLKGIFENLGILDVFKPSADLNG
LVLESGAKIDKIVQKAFLKIDEKGGEASAATGVLTRRKKSIDNLIQPPME
FIADHPFFYVIHDNKVIYFQGHIVEPRW*
BS31571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28B-PB | 378 | CG6717-PB | 1..378 | 1..378 | 1924 | 100 | Plus |
| Spn28B-PA | 378 | CG6717-PA | 1..378 | 1..378 | 1924 | 100 | Plus |
| Spn38F-PA | 372 | CG9334-PA | 1..370 | 1..376 | 866 | 47.9 | Plus |
| Spn28F-PA | 375 | CG8137-PA | 1..373 | 1..376 | 860 | 48.4 | Plus |
| Spn38F-PB | 370 | CG9334-PB | 1..368 | 1..376 | 854 | 48.1 | Plus |
