BS31576.complete Sequence
2822 bp assembled on 2012-10-15
GenBank Submission: KX800640
> BS31576.complete
GAAGTTATCAGTCGACATGTTGCCGTACCAGGCAGCCGTGGCCATGGACT
ACGCCGGATACCAGAGACAGCCCACGCCCGGACATCCCGGAAGCCACATG
GCCACCATGGGATCTCTGGGCATGCCCGCGGTGCCCTTCACCCACAGCTG
GATGGTGCCCACGCAGGACCTTTGCGCCATGCCACCCTACAACAAAATGA
CCGGACACCAGCAGCCGCCAGGTGCCGGAATGCACGCCCAGCAACAGCCC
CTCGAGCCCGGCATCCTGGAGCTGCGCAAGGAGAAGTCGAGGGACGCGGC
GAGATCGCGGCGCGGAAAGGAGAACTACGAGTTCTACGAGCTAGCCAAGA
TGCTCCCTCTGCCGGCAGCCATCACCAGCCAGCTGGACAAGGCCTCGATC
ATAAGACTGACCATCAGCTACCTGAAGCTGAGGGATTTCTCCGGACACGG
CGATCCGCCATGGACTCGGGAAGCCTCTAGCAGCAGTAAGCTAAAAAGTG
CCGCCATTCGTCGCAGCCCCGCTGTTGATTTGTTCGAGCAACATCAGGGC
ACCCACATATTACAGTCGCTGGATGGTTTCGCCCTAGCTGTGGCGGCAGA
CGGACGCTTCCTGTATATTTCCGAGACGGTGTCCATCTATTTGGGCCTGT
CGCAGGTGGAGATGACGGGTAGCAGCATCTTCGACTATATCCACCAGGCG
GATCACTCGGAGATCGCCGACCAGCTGGGCCTGAGCCTAACAAGCGGCGG
CGGCGGTGGCGGTGGAAGCTCGAGCAGCGGCGGAGGAGGAGGCGGAGCGG
GAGGTGGTATGGCCTCACCCACTTCCGGAGCCTCCGACGATGGAAGCGGC
ACACACGGTACGAACAATCCCGACGTTGCGGCCTCCATGACCCAAGCTTC
GACCAGCGGCTACAAGGGATACGATCGAAGCTTCTGTGTCCGTATGAAGT
CCACGCTGACCAAGCGCGGCTGTCACTTCAAATCCTCAGGCTATCGGGTG
GTTCTGCTGTTGTGCAAGCTGCGTCCCCAGTACACATTTTCCCACAGTCG
CAAATCGCAGCCTCCACTCCTCGGAATGGTTGCCCTGGCCATCGCACTGC
CTCCGCCATCGGTGCACGAGATCCGGCTGGAGTGCGACATGTTCGTCACC
AGGGTGAACTTTGACCTGCGAGTAGCCCACTGCGAGCCAAGGGTATCCGA
TCTGCTGGACTATTCCCCGGAGGACCTGGTTAACAAGAGCTTGTACTCAC
TGTGTCACGCCGAGGATGCCAATCGCCTGCGCAAGAGCCACTCAGACCTG
ATCGAGAAGGGTCAGGTGTTGACCGGATACTACCGACTAATGAACAAGAG
TGGAGGCTACACTTGGCTCCAGACCTGTGCCACTGTCGTCTGCAGCACAA
AGAACGCCGATGAGCAGAACATCATCTGCGTGAACTATGTGATCAGCAAC
CGGGAGAACGAGAACATGATACTGGATTGCTGCCAACTGGAACCCAGTCC
GGATAGCATTAAGCACGAGGAGGGACTGGGTAACGACAAAAGCAGCGGGT
CGCCAGGAGGAGATGCCAGTGGCGAAGGCAACTCTCACCTGAGTGCCGGA
GACATGAAGCTTAACTCACCGAAAACCGATTCAGAGGGCCATTCCCACCG
CGGCAGGGGTCGCAGTGCAGCCGCCTCGCATGGAAGTTCAATGAACAGCC
TCACCATGATCAAGGATAGCCCCACTCCGCTGGGTGTGGAGATCGATTCG
GGAGTGCTGCCCACCACAGTGGCCACTCCAGTGCCGGCAGCCACTCCACC
AGTGCAGTCCACCAAGCGAAAGCGAAAAACCAAAGCGTCGCAGCACGCGG
AGGACCAGGGTCAAGAGCAGGTAATCTCCGAGCAGCCTCTGCCCAAACTA
CCGACAATGGAGCAACGCGATCAGCAGCCCCGCAGCCGCTTACCCTCGAT
TGTGGATGAGCAGCCCTCGTCCGCGGCCGACTCCGCGGTCAAGGATCTGG
AGCAGGCCATGTCCAAGCATCTGCCCTCGCCAGCGGCGGTGGTGTCCGTG
GCCCCGCCCAATACGGATTTCAGTGCCGACTCTCTGCTTAAGCAGCAGCA
ACAACAACAGCAGCTGGATCCCAACGAGAAAAGCAGCACCATTCAATGGA
TAGGCACTCCCTACCAACAGCCACCGGCGCCCATGCCAGCTACCGCCCTT
CTCCGGCAGTTATACGCCAACCGGGAGAGCGTGATCCGGGCGACGGCTAG
GCAAACACCAACTGGAGTGGGCCCCGGAGTTTTCTACGGCGATCAGCAAA
CAGGTCCGCTGCCCACTCCGCCGGGCAGTGAGTCGTCCTACGAGAACCAA
TACCTGCAGCTGCACTCTGCCGCTTCCGGTGGACATCCTGGCGGCCAGAA
GACCTCCGCTGATGCCTTCACCAATCTGGTGTCAACCTACGGCGGCTATC
ACAGCTCCATTGACTATCACAACGCCATGACCCCGCCCAGTTCAGTGTCT
CCCAGGGACTCGAATCAACCGGGTAAGGCGGCTCCAGTCCTGGCCTCCAA
CGGGGGATACGACTATGCCCCCGATCCACTCCGAGGGCAGTACGCCACTT
CATCCGGAGACGTGGTGCCCGCCACGCTGCCTCTGAAGCCCCAGGCATCC
TATACAGCAACAATGCATCCTTCGGGCAGCACAACCACCGAGGGTGGAGT
TACCTACAGTAATCTCGACCAGCCGCAGTACTTCGCTCCGCATTCGAGTT
TCCACCTTTACCACAAGGGCAGCCCGGCCAGCGGCTGGTACTCCACGCCC
TCCTAGAAGCTTTCTAGACCAT
BS31576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trh-RB | 2790 | CG42865-PB | 1..2790 | 17..2806 | 13950 | 100 | Plus |
| trh-RG | 2772 | CG42865-PG | 1..2772 | 17..2806 | 13645 | 99.4 | Plus |
| trh-RC | 2901 | CG42865-PC | 356..2901 | 261..2806 | 12730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trh-RB | 4501 | CG42865-RB | 654..3443 | 17..2806 | 13950 | 100 | Plus |
| trh-RG | 4483 | CG42865-RG | 654..3425 | 17..2806 | 13645 | 99.4 | Plus |
| trh-RC | 4517 | CG42865-RC | 914..3459 | 261..2806 | 12730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 367582..368946 | 2806..1442 | 6825 | 100 | Minus |
| 3L | 28110227 | 3L | 370906..371218 | 875..563 | 1565 | 100 | Minus |
| 3L | 28110227 | 3L | 376419..376663 | 261..17 | 1225 | 100 | Minus |
| 3L | 28110227 | 3L | 373658..373896 | 499..261 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 369479..369674 | 1192..997 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 369003..369150 | 1446..1299 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 370604..370729 | 1000..875 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 369310..369421 | 1298..1187 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 371440..371507 | 565..498 | 340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2898 | 2091..2180 | 141 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6786 | 2091..2141 | 140 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6807 | 2091..2141 | 140 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6882 | 2091..2141 | 140 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2377 | 2091..2141 | 133 | 76.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2687 | 2084..2148 | 131 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1610 | 2091..2146 | 128 | 75 | Plus |
BS31576.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:11:22 Download gff for
BS31576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trh-RB | 659..3443 | 22..2806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:57 Download gff for
BS31576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trh-RB | 659..3443 | 22..2806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:00 Download gff for
BS31576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trh-RB | 659..3443 | 22..2806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:00 Download gff for
BS31576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 367582..368941 | 1447..2806 | 100 | <- | Minus |
| 3L | 369003..369150 | 1299..1446 | 100 | <- | Minus |
| 3L | 369310..369416 | 1192..1298 | 100 | <- | Minus |
| 3L | 369480..369673 | 998..1191 | 100 | <- | Minus |
| 3L | 370607..370728 | 876..997 | 100 | <- | Minus |
| 3L | 370906..371215 | 566..875 | 100 | <- | Minus |
| 3L | 371440..371507 | 498..565 | 100 | <- | Minus |
| 3L | 373660..373895 | 262..497 | 100 | <- | Minus |
| 3L | 376419..376658 | 22..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:57 Download gff for
BS31576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 371440..371507 | 498..565 | 100 | <- | Minus |
| arm_3L | 370906..371215 | 566..875 | 100 | <- | Minus |
| arm_3L | 367582..368941 | 1447..2806 | 100 | <- | Minus |
| arm_3L | 369003..369150 | 1299..1446 | 100 | <- | Minus |
| arm_3L | 369310..369416 | 1192..1298 | 100 | <- | Minus |
| arm_3L | 369480..369673 | 998..1191 | 100 | <- | Minus |
| arm_3L | 370607..370728 | 876..997 | 100 | <- | Minus |
| arm_3L | 373660..373895 | 262..497 | 100 | <- | Minus |
| arm_3L | 376419..376658 | 22..261 | 100 | | Minus |
BS31576.pep Sequence
Translation from 16 to 2805
> BS31576.pep
MLPYQAAVAMDYAGYQRQPTPGHPGSHMATMGSLGMPAVPFTHSWMVPTQ
DLCAMPPYNKMTGHQQPPGAGMHAQQQPLEPGILELRKEKSRDAARSRRG
KENYEFYELAKMLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWT
REASSSSKLKSAAIRRSPAVDLFEQHQGTHILQSLDGFALAVAADGRFLY
ISETVSIYLGLSQVEMTGSSIFDYIHQADHSEIADQLGLSLTSGGGGGGG
SSSSGGGGGGAGGGMASPTSGASDDGSGTHGTNNPDVAASMTQASTSGYK
GYDRSFCVRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHSRKSQPP
LLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYS
PEDLVNKSLYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTW
LQTCATVVCSTKNADEQNIICVNYVISNRENENMILDCCQLEPSPDSIKH
EEGLGNDKSSGSPGGDASGEGNSHLSAGDMKLNSPKTDSEGHSHRGRGRS
AAASHGSSMNSLTMIKDSPTPLGVEIDSGVLPTTVATPVPAATPPVQSTK
RKRKTKASQHAEDQGQEQVISEQPLPKLPTMEQRDQQPRSRLPSIVDEQP
SSAADSAVKDLEQAMSKHLPSPAAVVSVAPPNTDFSADSLLKQQQQQQQL
DPNEKSSTIQWIGTPYQQPPAPMPATALLRQLYANRESVIRATARQTPTG
VGPGVFYGDQQTGPLPTPPGSESSYENQYLQLHSAASGGHPGGQKTSADA
FTNLVSTYGGYHSSIDYHNAMTPPSSVSPRDSNQPGKAAPVLASNGGYDY
APDPLRGQYATSSGDVVPATLPLKPQASYTATMHPSGSTTTEGGVTYSNL
DQPQYFAPHSSFHLYHKGSPASGWYSTPS*
BS31576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trh-PB | 929 | CG6883-PB | 1..929 | 1..929 | 4887 | 100 | Plus |
| trh-PA | 958 | CG6883-PA | 1..958 | 1..929 | 4847 | 97 | Plus |
| trh-PD | 1022 | CG42865-PD | 1..958 | 1..929 | 4847 | 97 | Plus |
| trh-PG | 923 | CG42865-PG | 1..923 | 1..929 | 4834 | 99.4 | Plus |
| trh-PE | 952 | CG42865-PE | 1..952 | 1..929 | 4794 | 96.3 | Plus |
