BS31578.complete Sequence
1355 bp assembled on 2012-08-22
GenBank Submission: KX801769
> BS31578.complete
GAAGTTATCAGTCGACATGGCAGCTGTACACAATCGGACACATTTTATCT
GCGGTGGCACGCTGATTCATAAGCGATTCGTTTTGACAGCTGCGCATTGC
ATAGTTGACCAAGACGTCCAATCAGTGAGTTTGGGTGCCTACAACAAGAG
TGATCCTGCAGATCGGAAAGACGTCATAACAGCAGTAGTGCATAGTTCGT
TTGACGTTCGTGCTTCCTATGAAAATGACATTGGCCTGCTAAAGCTGTCC
AGCGACGTTATCTTTAATGCCCTTATTCGTCCAATCTGCATCGTTTTGAA
CAAGAGTATGGCCAACCATATGCGCAACATGCGGACCTTTAAAGCCTTTG
GATGGGGAACATTACGCGGCAACAAGACATCCGATATACTTCAGACAATC
ATCCTTAATCATTTGGATCGTGAAGAGTGCTATATGGAATTGTCTGTTTA
TCCCAGTGAGAAGCAGATATGCGCTGGTGTACCTTCCGGAGACACCTGTG
GGGGCGATTCTGGTGGTCCCCTGACAAACGATGTGTTTATTCAAGGTATC
GGCAATCGGGAAGTTCAGTTCGGGATCATCAGCGTTGGCAAAACATCCTG
CGATGGACAGGGAGTGTATACCGATTTGATGAGCTTTGCGGACTGGATTA
AGATGACAATAGAGAGGTTATCTATCGAGGATGAACCACAGTCTGCACCC
TTCTACAAAATTATACCCCAGCAGCAAGATGTTTTTTTGTACAACGACTG
TGGCGGCGCCAACATTGCTGCGAATTTGGAGGCACTTATTCGTTGGTCGA
TTTTTTGGACTCGGGGCATTTTCGTAACACACCAAAACTCATCAAACTTG
CAGGTATATCTGAAGGGAAGGACGCAATTCTACGGGATGTATAGCGTGTT
CGGCGTCTTCCCAAATGATCAAAATGATGTAGCGTTGCTTAAGCTTAATC
GACCCGTGACGGGCCCAGACGGATTTAAACCCATATGTATGCTGGCGAAC
GTAGTAGACCAACAGAGGGCCGCGTCTACTCCTCCCTTCACCATGTTCTT
CGAAGCTCCCGATAATGGAACTATATATGATATCAGTGTGGCCCTTGGAA
ACCCCTACCAATGCTCAGGTAGAATCCAGAGACGAGTAGAGTGGAATCAA
CTGTGCGTCGAACATCCGTACGGAATGGGCTTCATTGGGAGCTACATACT
GGGGAGGAAGGTAACGAACTCGGGAAAGACTTGGTTAGTTCTATTTGGTA
TCGTCAGTGATTCTTCAAATGGTGTGTACGTTTTCACAAACGTTATGAAG
TTATCGGAATGGATTGCAAATACGATAAGGATTAACTAAAAGCTTTCTAG
ACCAT
BS31578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30187-RC | 1323 | CG30187-PC | 1..1323 | 17..1339 | 6615 | 100 | Plus |
| CG30187-RD | 1356 | CG30187-PD | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG30187-RD | 1356 | CG30187-PD | 851..1356 | 834..1339 | 2530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30187-RC | 1573 | CG30187-RC | 166..1488 | 17..1339 | 6615 | 100 | Plus |
| CG30187-RD | 1606 | CG30187-RD | 166..983 | 17..834 | 4090 | 100 | Plus |
| CG30187-RD | 1606 | CG30187-RD | 1016..1521 | 834..1339 | 2530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22917634..22918198 | 833..269 | 2825 | 100 | Minus |
| 2R | 25286936 | 2R | 22916928..22917301 | 1339..966 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 22918260..22918408 | 269..121 | 745 | 100 | Minus |
| 2R | 25286936 | 2R | 22917351..22917469 | 968..850 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 22918567..22918625 | 75..17 | 295 | 100 | Minus |
| 2R | 25286936 | 2R | 22918466..22918511 | 120..75 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:35:22 has no hits.
BS31578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:54 Download gff for
BS31578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30187-RC | 142..1462 | 17..1337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:12 Download gff for
BS31578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30187-RC | 166..1486 | 17..1337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:24 Download gff for
BS31578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30187-RC | 166..1486 | 17..1337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:24 Download gff for
BS31578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22916930..22917298 | 969..1337 | 100 | <- | Minus |
| 2R | 22917351..22917469 | 850..968 | 100 | <- | Minus |
| 2R | 22917534..22917549 | 834..849 | 100 | <- | Minus |
| 2R | 22917634..22918197 | 270..833 | 100 | <- | Minus |
| 2R | 22918260..22918408 | 121..269 | 100 | <- | Minus |
| 2R | 22918466..22918511 | 75..120 | 100 | <- | Minus |
| 2R | 22918568..22918625 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:12 Download gff for
BS31578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18804453..18804821 | 969..1337 | 100 | <- | Minus |
| arm_2R | 18804874..18804992 | 850..968 | 100 | <- | Minus |
| arm_2R | 18805057..18805072 | 834..849 | 100 | <- | Minus |
| arm_2R | 18805157..18805720 | 270..833 | 100 | <- | Minus |
| arm_2R | 18805783..18805931 | 121..269 | 100 | <- | Minus |
| arm_2R | 18805989..18806034 | 75..120 | 100 | <- | Minus |
| arm_2R | 18806091..18806148 | 17..74 | 100 | | Minus |
BS31578.pep Sequence
Translation from 16 to 1338
> BS31578.pep
MAAVHNRTHFICGGTLIHKRFVLTAAHCIVDQDVQSVSLGAYNKSDPADR
KDVITAVVHSSFDVRASYENDIGLLKLSSDVIFNALIRPICIVLNKSMAN
HMRNMRTFKAFGWGTLRGNKTSDILQTIILNHLDREECYMELSVYPSEKQ
ICAGVPSGDTCGGDSGGPLTNDVFIQGIGNREVQFGIISVGKTSCDGQGV
YTDLMSFADWIKMTIERLSIEDEPQSAPFYKIIPQQQDVFLYNDCGGANI
AANLEALIRWSIFWTRGIFVTHQNSSNLQVYLKGRTQFYGMYSVFGVFPN
DQNDVALLKLNRPVTGPDGFKPICMLANVVDQQRAASTPPFTMFFEAPDN
GTIYDISVALGNPYQCSGRIQRRVEWNQLCVEHPYGMGFIGSYILGRKVT
NSGKTWLVLFGIVSDSSNGVYVFTNVMKLSEWIANTIRIN*
BS31578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30187-PC | 440 | CG30187-PC | 1..440 | 1..440 | 2332 | 100 | Plus |
| CG30187-PD | 451 | CG30187-PD | 1..451 | 1..440 | 2310 | 97.6 | Plus |
| CG10764-PA | 523 | CG10764-PA | 52..516 | 1..437 | 627 | 35.4 | Plus |
| CG43110-PA | 483 | CG43110-PA | 50..482 | 1..440 | 626 | 34.6 | Plus |
| CG43110-PB | 483 | CG43110-PB | 50..482 | 1..440 | 626 | 34.6 | Plus |
