BS31582.complete Sequence
1712 bp assembled on 2012-10-15
GenBank Submission: KX802458
> BS31582.complete
GAAGTTATCAGTCGACATGTTGTTCGCCGGATTTGGAGTACTATTGTTTG
TAGCTGTTGCTGTCGGAGATTCCTTGGATGTGTGCCTGGAGGATATGGGC
TGTATGCGAGGCACTCTAATGCCAGGATATCAGAGCGGAGAGTTCGAAGC
CTTCATGGGCATTCCCTTTGCCCAGCCGCCAGTTGGACCGCTGCGTCTAA
AGAACCCTGTGCCGAATGAACCCTGGGAGGGAGTACTCGATGCTGGAGCG
GCGAAGGACAGCTGCATTCAGAGAAGTTACTTTGCAAAAGAATGGGGTTT
GATGGGAGTGGAGGACTGCCTCTACCTGAACGTCTACAGACCGAAGAATC
GCGCTGAAGATAAGTTGCCCGTGATGGTTTATATACATGGAGGCGGTTTC
TTTAGCGGATCTGCCCATCCGATGGCTAGTGGACCAGAGTATCTGATGGA
TACAAACAAGGTGGTCATGGTAACAATGAACTATCGCCTTGGTCCCTTCG
GTTTTCTAAGCACTGGCGATGAGCACATGCCAGGGAATTTCGGTTTCAAG
GATCAGCGATTGGCTCTGCAGTGGATACAAAAACACATAGCTACATTCGG
AGGAGATCCAAAAAAGGTCACGGTCCTTGGGCACAGTGCTGGCGGAATAT
CTGCCCACTTGCACATGATTAGCCCCAATTCAAAGGGACTTTTCCAAAAT
TCCATGTCCTTGACTGGCACCATGTTTCTGTCGGCCATGAAGATTCTCAA
AGATCCCCTAAGTCAGGCAAGGCGTCTGGGCAAGGAATTGGCCATCGATC
AAGCGGAGAGTCTCAGTTCCCAGGATCTTGCGGAAGCGCTACGTAATGTG
TGTCCTAAAAAACTCCTTGTTAGTGTGGACAGCTTAAAGGTGTGGGATAA
CATGCCCCATCTAACCACTCTCCCAGTACTGGAGGCTCCATCTCCCGATG
CCTTCCTGGTCGAGGATCCGCTAGATGCCCATCGGGCAGGTCGCATTAAC
CAGATGCCCTGGATACTAAGCCTAAGTTCGCGAGCTGGTGAAGGTTCTCT
ATTCATAATGCGTGCCTTCATTAATCCCAAGCTGCGGGCAGAGTTCAATG
AGAACTTCCTGGAACATATGGCCCTGCTGCTTAACCTGCCCGAGGGAACT
CCCGTCCAGATGGTCAGCGAAATACTTGATGCTTACGACTTTAAAGGAGA
TAGTCTTAACAACGATACCATGTTGAAATTGGCAGAGATATCTGGTGACT
TCAACTTTTATTATCCGATTTATGAAACTATTTCGTCGTATGTCACCTAT
GCAAATCTCGAAGAGAATCCACTATTCATCTATATCTTTGAGTTTGCCGG
CCTAAACTCTATAACAAAGTTTTTTGCTGGCACCACTGACGACTATGGTC
TTGGAGCAGTTCACATGGATGATGGTCTGCACACCATACGCATTCCGGTT
AGCTTCGATGATTTTCCCAAGGACTCGGAAGATGCCAAGGTTATACAACG
AATGTCTTCGCTGATGACGGATTTCGCCAAAACGGGAGTTTTCCACGAAG
AATCCATCTGTAAAGTTTCGGATTTCAAAGAACAGGGAATGTGCAACTAT
CTTCACTTTGGTGGCAACAAAGAAAAGTATCTGGAAGATATTCGAAACAG
CATAACGCTCACCGCATTTCCCATATGGAAAAAGCTATTTGCATAGAAGC
TTTCTAGACCAT
BS31582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jhedup-RA | 1680 | CG8424-PA | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jhedup-RA | 1758 | CG8424-RA | 3..1682 | 17..1696 | 8400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16118011..16118861 | 686..1536 | 4255 | 100 | Plus |
| 2R | 25286936 | 2R | 16117768..16117955 | 500..687 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 16117111..16117296 | 17..202 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 16118913..16119073 | 1536..1696 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 16117553..16117710 | 345..502 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 16117353..16117498 | 201..346 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:49:45 has no hits.
BS31582.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:11:11 Download gff for
BS31582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jhedup-RA | 6..1680 | 22..1696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:30 Download gff for
BS31582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jhedup-RA | 8..1682 | 22..1696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:45 Download gff for
BS31582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jhedup-RA | 8..1682 | 22..1696 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:45 Download gff for
BS31582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16117116..16117296 | 22..202 | 100 | -> | Plus |
| 2R | 16117355..16117498 | 203..346 | 100 | -> | Plus |
| 2R | 16117555..16117708 | 347..500 | 100 | -> | Plus |
| 2R | 16117769..16117954 | 501..686 | 100 | -> | Plus |
| 2R | 16118012..16118861 | 687..1536 | 100 | -> | Plus |
| 2R | 16118914..16119073 | 1537..1696 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:30 Download gff for
BS31582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12004621..12004801 | 22..202 | 100 | -> | Plus |
| arm_2R | 12004860..12005003 | 203..346 | 100 | -> | Plus |
| arm_2R | 12005060..12005213 | 347..500 | 100 | -> | Plus |
| arm_2R | 12005274..12005459 | 501..686 | 100 | -> | Plus |
| arm_2R | 12005517..12006366 | 687..1536 | 100 | -> | Plus |
| arm_2R | 12006419..12006578 | 1537..1696 | 100 | | Plus |
BS31582.pep Sequence
Translation from 16 to 1695
> BS31582.pep
MLFAGFGVLLFVAVAVGDSLDVCLEDMGCMRGTLMPGYQSGEFEAFMGIP
FAQPPVGPLRLKNPVPNEPWEGVLDAGAAKDSCIQRSYFAKEWGLMGVED
CLYLNVYRPKNRAEDKLPVMVYIHGGGFFSGSAHPMASGPEYLMDTNKVV
MVTMNYRLGPFGFLSTGDEHMPGNFGFKDQRLALQWIQKHIATFGGDPKK
VTVLGHSAGGISAHLHMISPNSKGLFQNSMSLTGTMFLSAMKILKDPLSQ
ARRLGKELAIDQAESLSSQDLAEALRNVCPKKLLVSVDSLKVWDNMPHLT
TLPVLEAPSPDAFLVEDPLDAHRAGRINQMPWILSLSSRAGEGSLFIMRA
FINPKLRAEFNENFLEHMALLLNLPEGTPVQMVSEILDAYDFKGDSLNND
TMLKLAEISGDFNFYYPIYETISSYVTYANLEENPLFIYIFEFAGLNSIT
KFFAGTTDDYGLGAVHMDDGLHTIRIPVSFDDFPKDSEDAKVIQRMSSLM
TDFAKTGVFHEESICKVSDFKEQGMCNYLHFGGNKEKYLEDIRNSITLTA
FPIWKKLFA*
BS31582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jhedup-PA | 559 | CG8424-PA | 1..559 | 1..559 | 2944 | 100 | Plus |
| Jhe-PB | 579 | CG8425-PB | 15..553 | 2..538 | 974 | 41.6 | Plus |
| Jhe-PC | 579 | CG8425-PC | 15..553 | 2..538 | 974 | 41.6 | Plus |
| Jhe-PA | 579 | CG8425-PA | 15..553 | 2..538 | 974 | 41.6 | Plus |
| CG6414-PA | 583 | CG6414-PA | 13..515 | 8..507 | 617 | 32.8 | Plus |
