BS31609.complete Sequence
2696 bp assembled on 2013-01-22
GenBank Submission: KX804055
> BS31609.complete
GAAGTTATCAGTCGACATGAGCGAGTCTGCGGTAGCGGTGGAGCCGGAAG
AAAGGATGGTTGCTAACAACAAAATCCATTTCTCCAAGGAGGTGAAGCAG
GTCATCGACAAGGTTCTCAAAACGGACGATCCGATGGATGCGCCGGACTT
CAACACTGTGGACTACATCAACCAGCTCTTCCCCAACGAGCAATCGCTGG
CCGGTATTGATGAGACCATCCAAAAGATGCAGTGCGAGGTGTCCCTGATT
GATGACAACATCCGATCCGTGGTTCGTGGCCAAACGAACACCGGCCAGGA
TGGACAACTGGCACTGTGCGAGGCTCAAAAGGTTATCAGCTCCCTGTTCA
GCCACATCATCGACGTGAAGACCCGGGCGGAGCGCACCGAGGAAATGGTC
AAGGAGATAACCCGGGATATCAAGCAGCTGGACTGCGCCAAACGCAATCT
AACCGCTGCCATCACAACGCTGAATCACCTGCACATGCTGGTCGGTGGAA
TTGAAAGTCTGAACAAATTGATCGAGCGGCGATCCTATGGTGAAATCCTT
AATCCCCTCCAGGCGATTACCGAAGTTAACCAGCACTTCCAGCAGTTCTC
CGACATCGAGGAAATCAAGAATCTCTCACAAAGCGTAGATAAGATACAGG
TTACACTGGCCCAGCAAATCACAGAGGATTTCAAGGAGGCGTTTTCAGCA
AAGCCATCGTCACAGAACCAACACCGTTTGGGTCTTAACCAGTTGGCCGA
TGCTTGTAAAGTGATGTCCGTGCTGGATCCCAAAGTGAAGAAGGAGCTGC
TCAAGTGGTTTATTGCACAACAACTGGAGGAGTACACGCACTTGTTTCAC
GAGAATCAGGATATTGCCTGGCTGGACAAGATTGATAAGCGTTATGCCTG
GCTTAAGAGGCATCTGCTAGACTTCGAGGACAAGTATGGACCGGTGTTTC
CACTGGACTGGGAGGTCTCCGAGCGAATTACTGTGGAGTTTTGTCGACAG
ACACGCGAACAGCTGGCACAAATCATGGCCAAACGCACCAACGAAATCGA
TGTGAGACTACTTTTGTTCGCCATCAACAAGACGCAGGCTTTTGAACAGC
TGCTTTCCAAGCGATTCACGGGCGTTACACTGGGTGCACAGCCGACGGAT
AAAGCGAGAGTACTTGCTGAACCAACGACGACGGACGGTGCTGTGGGCTT
AACCGTTTTCCACGACCAAATCGGACAATGCTTTAAGCCGCACTTGGACA
TCTACATACGCAGCATCGACCGCAATCTTTCGGAGCTGATGGACAAGTTC
GTAGAGATGTCTCGGGAACCATACAAGTTCGCCGAGGCCAAGACCACCGT
GTACCCCAGCTCTGGTGATCTATTCGTCTTTTACAAGAAGTGCATGGTGC
AGTGCAACCAGCTAAGCAACGAACAACCAATGTACGATCTGGCTTTGGTG
TTTAAAAAATATCTACGGGAGTACGCCTCCAAAGTGCTCGAGGGCAGCAC
ACCCAAGCTTGTGCCAGCCACCACTAGCAGCTCGATCGGTAAAAGTGTTT
CGTTACTCACGCGCGATATGCAGAATCTATCAACGGCCGCTGGTCAGGTG
TTTCACAATTTCCTCAAAGAGGGCGATACGCAGCGATTTGCAAGAGATGA
TCTGGTGCGCATTTGTTGCGTTCTGACCACGGGTGAGTACTGTTTGGAGA
CGGTCCAACAGCTGGAGGATAAACTGAAGGAAAAGGTGACTTCTGCATAT
GTCAGCAAGATTGACATGAGCGAGGAAAAGGATGTCTTTCATAGAATCAT
TTCCAACTGCATCCAACTTTTGGTCCAAGATCTAGAGGCTGGCTGCGAAG
CTTCGCTGCAGGCGATGGCCAAGGTGCAGTGGCAACACATTAACAACGTG
GGCGACCAGAGCGCCTTCATCAGCAGCCTGTGCGGTAACTTTAAGCAGAC
AGTGCCTACCATCAGGGACACGCTAGCCAGTTCGCGGAAGTATTTCACCC
AGTTCTGCCATCGCTTCGTCGCCGCCTTCATACCGAAGTTCATCAATGTG
CTCTATCGCTGCAAACTAACCCTCTCGGATGGTTCCAACAATGTTCTGGG
CTGCGAGCAACTCTTGTTGGACACCCATTCGCTAAAGACGGCTTTATTAG
AGCTACCTTCCGTGGGATCGAGTGTGAACCGCAAGGCGCCCACCAGTTAC
ACCAAAGTTGTGGTCAAGGACATGACTCGGGCCGAGATGATCATCAAGGT
GGTGATGACGCCGGTACAGCCGCCGGCGCACTTCACTCAGCAAGTGCTTA
AGCTGCTGCCAGACATTACCATTGCGGAGTACCAAAAGATTCTGGATATG
AAGGCGGTCAAACGTGTGGATCAACTGCAACTGATTGATCTTTTCAAGCA
CACGGCATCTGCAGCGGCTGTGAGTGGCTTAATAGAGCCAACTACTGGAG
AGGAGGAGACCCAAGGTGCAGAAACAGTAGTCGCAACTTCGGGGACCACA
GACGATGCTGAAACCTCAGCAGTACCAACTGAAACAACAACGGCAACTTC
CTCAACCCCCAAACGAGCCTTTATCTTCAGCGTGGGCAGCTTTACGGGAA
GCGCAGATAAAAATGCCGATGGAAGTTCCCAGACGGGCATCAGAAAGCTG
GAAAACCTACTGAAAAAGCGCTTCCCCTAGAAGCTTTCTAGACCAT
BS31609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3338-RA | 2664 | CG3338-PA | 1..2664 | 17..2680 | 13320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3338-RA | 2960 | CG3338-RA | 81..2748 | 13..2680 | 13325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4384085..4385261 | 1794..618 | 5885 | 100 | Minus |
| 2L | 23513712 | 2L | 4383137..4384025 | 2680..1792 | 4445 | 100 | Minus |
| 2L | 23513712 | 2L | 4385316..4385825 | 619..110 | 2550 | 100 | Minus |
| 2L | 23513712 | 2L | 4385881..4385982 | 114..13 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:09:35 has no hits.
BS31609.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:45 Download gff for
BS31609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3338-RA | 85..2748 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:30 Download gff for
BS31609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3338-RA | 85..2748 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:24 Download gff for
BS31609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3338-RA | 85..2748 | 17..2680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:24 Download gff for
BS31609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4383137..4384022 | 1795..2680 | 100 | <- | Minus |
| 2L | 4384085..4385259 | 620..1794 | 100 | <- | Minus |
| 2L | 4385316..4385822 | 113..619 | 100 | <- | Minus |
| 2L | 4385883..4385978 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:30 Download gff for
BS31609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4385883..4385978 | 17..112 | 100 | | Minus |
| arm_2L | 4383137..4384022 | 1795..2680 | 100 | <- | Minus |
| arm_2L | 4384085..4385259 | 620..1794 | 100 | <- | Minus |
| arm_2L | 4385316..4385822 | 113..619 | 100 | <- | Minus |
BS31609.pep Sequence
Translation from 16 to 2679
> BS31609.pep
MSESAVAVEPEERMVANNKIHFSKEVKQVIDKVLKTDDPMDAPDFNTVDY
INQLFPNEQSLAGIDETIQKMQCEVSLIDDNIRSVVRGQTNTGQDGQLAL
CEAQKVISSLFSHIIDVKTRAERTEEMVKEITRDIKQLDCAKRNLTAAIT
TLNHLHMLVGGIESLNKLIERRSYGEILNPLQAITEVNQHFQQFSDIEEI
KNLSQSVDKIQVTLAQQITEDFKEAFSAKPSSQNQHRLGLNQLADACKVM
SVLDPKVKKELLKWFIAQQLEEYTHLFHENQDIAWLDKIDKRYAWLKRHL
LDFEDKYGPVFPLDWEVSERITVEFCRQTREQLAQIMAKRTNEIDVRLLL
FAINKTQAFEQLLSKRFTGVTLGAQPTDKARVLAEPTTTDGAVGLTVFHD
QIGQCFKPHLDIYIRSIDRNLSELMDKFVEMSREPYKFAEAKTTVYPSSG
DLFVFYKKCMVQCNQLSNEQPMYDLALVFKKYLREYASKVLEGSTPKLVP
ATTSSSIGKSVSLLTRDMQNLSTAAGQVFHNFLKEGDTQRFARDDLVRIC
CVLTTGEYCLETVQQLEDKLKEKVTSAYVSKIDMSEEKDVFHRIISNCIQ
LLVQDLEAGCEASLQAMAKVQWQHINNVGDQSAFISSLCGNFKQTVPTIR
DTLASSRKYFTQFCHRFVAAFIPKFINVLYRCKLTLSDGSNNVLGCEQLL
LDTHSLKTALLELPSVGSSVNRKAPTSYTKVVVKDMTRAEMIIKVVMTPV
QPPAHFTQQVLKLLPDITIAEYQKILDMKAVKRVDQLQLIDLFKHTASAA
AVSGLIEPTTGEEETQGAETVVATSGTTDDAETSAVPTETTTATSSTPKR
AFIFSVGSFTGSADKNADGSSQTGIRKLENLLKKRFP*
BS31609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3338-PA | 887 | CG3338-PA | 1..887 | 1..887 | 4512 | 100 | Plus |
