BS31619.complete Sequence
4751 bp assembled on 2012-10-15
GenBank Submission: KX803680
> BS31619.complete
GAAGTTATCAGTCGACATGAAAACGCGCCTCGTCTCGCTGACTTTCCGCG
GCAGTGCATCCGTGGATCCGCGCTATTCCGCCTCCATGCTGCCGTGGACC
ATTAACGATATCAGGTCCACGGAGAGCTACACGAAGTTGTCTGTGGGCAT
CGAGAACGGCATCCTGGAGTCGTACAACTCGGACTTTGAGCTGCAGTTCA
GTCATCCCCTGAAGCATATCGTCGGCATGTGCCGCATCATCCACAAGCCG
CAGGCGAAGAGCATCGGCAACGGCTTTCTGCAGCTGAAGTCTAGTGCTGG
CCAGACGTCGTCCTCCTCGGCAGTCGCATCCTCGATGGGCGGCGCAGCCA
GCAGCTCGCTGACCGGAAACGGACTGCGCCACACACTGACCGCATCCACG
TCGTACGGCTCCCTCTCCTCCAGCGCGGCGTGTGCTTATCAGCTGCAGTT
GCAGCAGTCGGCGGAGGCATCCGCGGAGCAGCCGCAAAACTTCATGGAGT
TCCAGGGACCCATCACCGGGCTGGTCTACTTGCTGAAGGATCCCAAGGAT
CCGCTGCTGCACATCTATCTGTTCGAGTGCGAGGCCGTCGAGGAGATGGC
CGAATTGATGCACCAGATGCGAGATCCCGCCCACACGCTGGGAGGTTCCG
TGGGCAGCATTCCGCAGACGCTGATCGGTGGCGGAGGAGGCAGCCACGGA
AACTCCAATGGAGCGCTGAACGGAATCCACGCCACGCCCGCCACGAATCT
GAAGATGAGCGAGGCAATGCGCAACGCTCAGCACGACACCAGCCCCAATC
CAGTCAGCTCTAAGATGAAGGCCTCCAAATCGTACACCCATGGCCTGAGT
AGCTCCTCGGGCACGGTGAACATTCCCACGTCCACGTCGGCCCAGAGCAA
TCTCTCCCTGCTAGCGGACATCTCGCCGAACCACACGCACTTCTTCGAGG
TGATGTACGTGGGCAAGATCCGGGTGTCCCAGAAGCGGGTGCCCAACACC
TTCATAGACGACGCCCTGCCCAAGTTCAAGGCGTACGATGCCCAGCGCCT
GAGACTTCTCCAGAATCGCAAGATGTCTCTCAGCAGTGAGGGTGGTGTGG
GCATTGAAGCGAAACCCAGCAGCTCCCTCAAGAGTCACGATTTGAAGGAG
GAGGACGAGGAGGAGCAGGAGCAGCACAAGGGGCATGACGATTCACAGGA
TTCACAGGCCAAGCCCTTGGTGCAACTACAGCTGACGGGCGCCGAGGAAG
GAGCTGCCCCGCGACCCCTGGAGGACAACAAGGAGAACAAGTCCCCGGAG
AAACGGCCCCTGCTGCGAGGTCAGAGTCAAATCGAACTGGGCCATAAGGA
GCACTCCGACGGCTCCCAGCCATTAGCAGCCAATAGCCAACTGGAGGCGC
CCAACGTCATTGTAAACAAGCAGCCCACGCCGCCCAGGGATCAGGGTGTG
GGCACTGGGACCGCTTCCGCTTCTGCGGGTCCCAGTCAACTGCATCCCAA
TTATGCGATGGATAACATACCCAAGCAGAGGGATCGCTCCGCCTCGCAAG
GCTGCATTCCGCCGTATGTGGAGCAGAACCGGACGATGGTGTTCCTAGTG
GGACGATGCGATCTCCGACTCATCTCGCCCGATCGCAAGCAGGTTCTGCT
CTACAAGGACTTCAAGGACGTGGCCAGCTGTGTGCACGGCCAGAAGTCGC
TGGATCACTTTGGTATTATCTGCAGGGAGCTGAACAACGATGGCTACATT
GGCTACGTGTTCAAGTGCCAGTCGGAACATGTGTGTGATGACATAGTGGC
CGCCATTGCTCAGGCCTTCGACACCTGCGCGGAGCAGAAGAAGAAGCAGG
ATACCCAAATCTTTAGCTGCGAGCACTGCCCGATGCTTTGGTACCACAAA
CTGTGCACTGACGTCGAGGGCCTTTCCGAGAAGAAGACCCAGGCCCTGAT
CCTGCGCCGAATCGAGACTCTAAGCGACGACGAGCAGGAGATTGTCTGGG
CCAAGTTCTGTGGCTCTGAGAAGACCAACTCTCCGGTGGCCGAGCAAAAT
CAGTTTCTGATGATGCTGCTCAGGGCGCACTGCGAGTCCAGACAGCAGAG
ACATGTCCACGACACCGCAGAGAACCGGTCGGAGTTCCTTAACCAATATC
TCGGTGGCAGCACCATATTCATGAAGGCCAAGCGCTCGCTTACCAACTCC
TTTGATAATCTCCTCAAGCGTAAGCCCTCCAAGGATGACATTGCTGTGCC
GTCGCACAACTTGAGGGACATCAGGGAGGGATCTGCCGAGCCGCTGGGCA
CCCAGTCACCTCCCGAGGGCTTCCGATCGCGATCGAACACGGTGGGAGCT
AGTCCCAGCAGCAAGCCCACAGCTGAGCAACTGAAGAGTCCCATGATGGA
TATATTCATCAAGGTGGGCAATAGTCCCAAAGAGGCGGAAACACATCAGG
GCTCCTGGCGTCAGGCCATACTTAATAGTGTAGTGACACCATCCAAGGGT
CTGGATAGTGAGGTTCCCACCGAGTTTCTGTCGCCCATGCGAAAGCCTGC
CAAGCGTGGTAAGCGGGATGCGGCGGAGCTGAGGGAACTGTGGCGCACTG
CCATTAGGCAGACTATAATGCTGAACCGCATGGAGACGGAGAACGCCATG
TTGCAGGCACGGCAGAATGAGAACGAGCTAAAGCGCATTAAACTGGACTA
CGAGGAGATTGTACCCTGCGACAAGCAGCTAATCGAGCGATGGGAGCAGA
TCATTGAGCGCAACTCCACACAGATAGGCAACAAGAAGGATCCCAAAGTC
CTGGGCCACGCCATTCGCACCGGAGTACCGCGATCGAAGCGCGGCGATGT
CTGGACCTTCCTGGCTGAGCAGCATTCCATGAACACGGCACCGGTGGACA
CAAAGCGATTCCCCAACTTCAATACACCGTATCACATGCTGCTGAAACAC
CTTACTGAGCATCAGCATGCGATTTTCATTGATCTGGGCAGGACTTTTCC
TAATCACCAGTTCTACAAGGATCCGCTTGGTCTCGGCCAGTTGTCGCTGT
TTAACCTGCTGAAGGCGTACTCCATTCTAGATCCGGAATTAGGGTACTGC
CAGGGTCTGGGCTTCATCTGCGGCGTCTTACTCCTGCATTGCGATGAAGC
CAATTCATTTCAACTGCTGAAGCACCTAATGTTTCGCCGTAATATGCGCA
CGAAATACCTGCCGGACATGAAAAAGTTTCAACTGCAGCTGTATCAGCTC
TCCCGATTGGTCAAGGATCATCTGCCAGATCTCTACGTGTGGCTCGATCA
GAACGATGTCTCGCCCACTTTGTATGCGGCTCCATGGATCCTCACCGTCT
TTAGCTCACAGTTTCCGCTGGGATTCGTGGCCCGCGTCTTTGATCTGCTC
TTCCTGGAATCCTCCGATGTAATCTTTAAGTTTGCCATTGCCTTGCTCTC
CGTGCACAAGCAGCAACTACTGGCCAAGGATAACTTCGAAGAGATTATGG
ACTATCTGAAGACCGTGGTGCCAAAGATGGAGCACACGTGCATGGAGCAA
ATTATGAAGCTGGTCTTTAGCATGGACATTGGAAAGCAGCTTGCCGAATA
CAAAGTGGAGTACAATGTGCTTCAGGAGGAGATTACCACCACTAACCATC
ACCTAGAAATGCTTAACCGGGAGAAGACGCAGAACCAGCATCTAGAGCAG
CAGTTGCAGTTTGCTCAATCTTCGATTGCTCAGCTGGAGACGACTCGTTC
CTCACAGCAAGCTCAGATAACCACGCTGCAATCGCAGGTCCAGTCTCTGG
AGCTAACCATCCAAACGCTGGGTCGCTACGTTGGCCAACTGGTGGAACAC
AATCCCGACCTGGAACTACCAAACGAGGTGCGGCGCATGCTCCAGCAGCT
GGACGACTTGGACCGTCAGCGTCGGAAGCCCATATTCACCGAACGCAAGA
TCGGCAAATCCGTTTCCGTCAACAGTCACTTGGGGTTTCCTCTCAAGGTG
CTCGAAGAGCTGACCGAAAGAGACGAACTTGGTTCGCCACAAAAGCAGAA
GAAGGAGAAGACACCTTTTTTTGAGCAGTTGCGTCAGCAGCAGCAACAGC
ATCGCCTCAACGGCGGCGGCCAGTCATCTAATGTCGGTGAGTCAGGGTCC
CCGACTCCACCTTCGCGACCCAATCGCCTGCTGGACAATGCCAGCGCTCG
GACCGTCATGCAAGTGAAACTGGATGAGCTGAAGCTGCCGGAGCACGTGG
ATAAGTTCGTAGCAAATATCAAAAGTCCCTTGGAGGTAGATTCTGGCGTA
GGCACGCCCCTCAGCCCGCCCAGCACAGCGAGTAACAGCAGCGGAGGAAG
CATATTCAGCCGCATGGGCTATCGGACAACGCCCCCAGCCCTTTCCCCGC
TGGCCCAGCGACAAAGTTATGGCGTGGCAATTACCACAGCACCATGCCCG
CAGCACATGGAGGAGGTGGCGCCCGCAACGACAATGGCTGTAATGCCTCA
GGAGGATGTCGAGGAGCCGCAGCCCATGCATCCGCTCAGCATGGTCGGGG
GCGATGTTAACGTACGCTTCAAGGGCACCACGCAGCTCAAATCCATACGT
CCGGTGCACCACATGCGTGCGATCCCGCTGGGTGGAGTACAGCATCCATC
CAGCACGGAGCCCGCGGTGCGAGTGGCTCCCGTGCCCGTGGAGCTGGCCC
CACCGGCGGCCACTGCGACCACCGGTCGCAGCTAAAAGCTTTCTAGACCA
T
BS31619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| plx-RC | 4719 | CG42612-PC | 1..4719 | 17..4735 | 23595 | 100 | Plus |
| plx-RD | 4221 | CG42612-PD | 82..4221 | 596..4735 | 20700 | 100 | Plus |
| plx-RA | 4140 | CG42612-PA | 1..4140 | 596..4735 | 20700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| plx-RC | 6225 | CG42612-RC | 626..5344 | 17..4735 | 23595 | 100 | Plus |
| plx-RA | 5465 | CG42612-RA | 443..4584 | 594..4735 | 20710 | 100 | Plus |
| plx-RD | 5372 | CG42612-RD | 352..4491 | 596..4735 | 20700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5710929..5711956 | 3708..4735 | 5140 | 100 | Plus |
| 3R | 32079331 | 3R | 5708499..5709386 | 1516..2403 | 4440 | 100 | Plus |
| 3R | 32079331 | 3R | 5707182..5707941 | 594..1353 | 3800 | 100 | Plus |
| 3R | 32079331 | 3R | 5709644..5710236 | 2547..3139 | 2965 | 100 | Plus |
| 3R | 32079331 | 3R | 5710294..5710863 | 3140..3709 | 2850 | 100 | Plus |
| 3R | 32079331 | 3R | 5697025..5697485 | 135..595 | 2305 | 100 | Plus |
| 3R | 32079331 | 3R | 5708021..5708182 | 1354..1515 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 5709438..5709584 | 2400..2546 | 720 | 99.3 | Plus |
| 3R | 32079331 | 3R | 5687250..5687369 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1075..1157 | 4036..4117 | 142 | 65.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3229..3310 | 4021..4101 | 119 | 62.2 | Plus |
BS31619.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:11:12 Download gff for
BS31619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plx-RC | 349..5065 | 17..4733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:33 Download gff for
BS31619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plx-RC | 626..5342 | 17..4733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:50 Download gff for
BS31619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plx-RC | 626..5342 | 17..4733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:50 Download gff for
BS31619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5687250..5687369 | 17..136 | 100 | -> | Plus |
| 3R | 5697027..5697485 | 137..595 | 100 | -> | Plus |
| 3R | 5707184..5707941 | 596..1353 | 100 | -> | Plus |
| 3R | 5708021..5708182 | 1354..1515 | 100 | -> | Plus |
| 3R | 5708499..5709386 | 1516..2403 | 100 | -> | Plus |
| 3R | 5709442..5709584 | 2404..2546 | 100 | -> | Plus |
| 3R | 5709644..5710236 | 2547..3139 | 100 | -> | Plus |
| 3R | 5710294..5710863 | 3140..3709 | 100 | -> | Plus |
| 3R | 5710931..5711954 | 3710..4733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:33 Download gff for
BS31619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1512972..1513091 | 17..136 | 100 | -> | Plus |
| arm_3R | 1522749..1523207 | 137..595 | 100 | -> | Plus |
| arm_3R | 1532906..1533663 | 596..1353 | 100 | -> | Plus |
| arm_3R | 1533743..1533904 | 1354..1515 | 100 | -> | Plus |
| arm_3R | 1534221..1535108 | 1516..2403 | 100 | -> | Plus |
| arm_3R | 1535164..1535306 | 2404..2546 | 100 | -> | Plus |
| arm_3R | 1535366..1535958 | 2547..3139 | 100 | -> | Plus |
| arm_3R | 1536016..1536585 | 3140..3709 | 100 | -> | Plus |
| arm_3R | 1536653..1537676 | 3710..4733 | 100 | | Plus |
BS31619.pep Sequence
Translation from 16 to 4734
> BS31619.pep
MKTRLVSLTFRGSASVDPRYSASMLPWTINDIRSTESYTKLSVGIENGIL
ESYNSDFELQFSHPLKHIVGMCRIIHKPQAKSIGNGFLQLKSSAGQTSSS
SAVASSMGGAASSSLTGNGLRHTLTASTSYGSLSSSAACAYQLQLQQSAE
ASAEQPQNFMEFQGPITGLVYLLKDPKDPLLHIYLFECEAVEEMAELMHQ
MRDPAHTLGGSVGSIPQTLIGGGGGSHGNSNGALNGIHATPATNLKMSEA
MRNAQHDTSPNPVSSKMKASKSYTHGLSSSSGTVNIPTSTSAQSNLSLLA
DISPNHTHFFEVMYVGKIRVSQKRVPNTFIDDALPKFKAYDAQRLRLLQN
RKMSLSSEGGVGIEAKPSSSLKSHDLKEEDEEEQEQHKGHDDSQDSQAKP
LVQLQLTGAEEGAAPRPLEDNKENKSPEKRPLLRGQSQIELGHKEHSDGS
QPLAANSQLEAPNVIVNKQPTPPRDQGVGTGTASASAGPSQLHPNYAMDN
IPKQRDRSASQGCIPPYVEQNRTMVFLVGRCDLRLISPDRKQVLLYKDFK
DVASCVHGQKSLDHFGIICRELNNDGYIGYVFKCQSEHVCDDIVAAIAQA
FDTCAEQKKKQDTQIFSCEHCPMLWYHKLCTDVEGLSEKKTQALILRRIE
TLSDDEQEIVWAKFCGSEKTNSPVAEQNQFLMMLLRAHCESRQQRHVHDT
AENRSEFLNQYLGGSTIFMKAKRSLTNSFDNLLKRKPSKDDIAVPSHNLR
DIREGSAEPLGTQSPPEGFRSRSNTVGASPSSKPTAEQLKSPMMDIFIKV
GNSPKEAETHQGSWRQAILNSVVTPSKGLDSEVPTEFLSPMRKPAKRGKR
DAAELRELWRTAIRQTIMLNRMETENAMLQARQNENELKRIKLDYEEIVP
CDKQLIERWEQIIERNSTQIGNKKDPKVLGHAIRTGVPRSKRGDVWTFLA
EQHSMNTAPVDTKRFPNFNTPYHMLLKHLTEHQHAIFIDLGRTFPNHQFY
KDPLGLGQLSLFNLLKAYSILDPELGYCQGLGFICGVLLLHCDEANSFQL
LKHLMFRRNMRTKYLPDMKKFQLQLYQLSRLVKDHLPDLYVWLDQNDVSP
TLYAAPWILTVFSSQFPLGFVARVFDLLFLESSDVIFKFAIALLSVHKQQ
LLAKDNFEEIMDYLKTVVPKMEHTCMEQIMKLVFSMDIGKQLAEYKVEYN
VLQEEITTTNHHLEMLNREKTQNQHLEQQLQFAQSSIAQLETTRSSQQAQ
ITTLQSQVQSLELTIQTLGRYVGQLVEHNPDLELPNEVRRMLQQLDDLDR
QRRKPIFTERKIGKSVSVNSHLGFPLKVLEELTERDELGSPQKQKKEKTP
FFEQLRQQQQQHRLNGGGQSSNVGESGSPTPPSRPNRLLDNASARTVMQV
KLDELKLPEHVDKFVANIKSPLEVDSGVGTPLSPPSTASNSSGGSIFSRM
GYRTTPPALSPLAQRQSYGVAITTAPCPQHMEEVAPATTMAVMPQEDVEE
PQPMHPLSMVGGDVNVRFKGTTQLKSIRPVHHMRAIPLGGVQHPSSTEPA
VRVAPVPVELAPPAATATTGRS*
BS31619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| plx-PC | 1572 | CG42612-PC | 1..1572 | 1..1572 | 8143 | 100 | Plus |
| plx-PE | 1518 | CG42612-PE | 1..1518 | 1..1572 | 7651 | 95.2 | Plus |
| plx-PD | 1406 | CG42612-PD | 28..1406 | 194..1572 | 7168 | 100 | Plus |
| plx-PA | 1379 | CG42612-PA | 1..1379 | 194..1572 | 7168 | 100 | Plus |
| plx-PF | 1352 | CG42612-PF | 28..1352 | 194..1572 | 6676 | 94.6 | Plus |
